RNA–Protein interactions for RNA: ENST00000514743.5

PDLIM5-219, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2 BASIC

Gene PDLIM5, Length 3,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-219ENST00000514743 CHMP4CQ96CF2 233 aa9.4□□□□□ -0.9
PDLIM5-219ENST00000514743 CGNL1Q0VF96 1302 aa9.4□□□□□ -0.91
PDLIM5-219ENST00000514743 DLC1Q96QB1 1528 aa9.4□□□□□ -0.91
PDLIM5-219ENST00000514743 NINLQ9Y2I6 1382 aa9.39□□□□□ -0.91
PDLIM5-219ENST00000514743 ATXN8OSP0DMR3 200 aa9.39□□□□□ -0.91
PDLIM5-219ENST00000514743 TAF3Q5VWG9 929 aa9.39□□□□□ -0.91
PDLIM5-219ENST00000514743 KNDC1Q76NI1 1749 aa9.39□□□□□ -0.91
PDLIM5-219ENST00000514743 MED14O60244 1454 aa9.39□□□□□ -0.91
PDLIM5-219ENST00000514743 TCERG1O14776 1098 aaKnown RBP9.39□□□□□ -0.91
PDLIM5-219ENST00000514743 MTHFSP49914 203 aa9.38□□□□□ -0.91
PDLIM5-219ENST00000514743 L1TD1Q5T7N2 865 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-219ENST00000514743 CWC22Q9HCG8 908 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-219ENST00000514743 SAFB2Q14151 953 aaKnown RBP eCLIP9.37□□□□□ -0.91
PDLIM5-219ENST00000514743 FAM13BQ9NYF5 915 aa9.37□□□□□ -0.91
PDLIM5-219ENST00000514743 BCAR3O75815 825 aa9.37□□□□□ -0.91
PDLIM5-219ENST00000514743 GPATCH11Q8N954 259 aa9.37□□□□□ -0.91
PDLIM5-219ENST00000514743 ANAPC15P60006 121 aa9.37□□□□□ -0.91
PDLIM5-219ENST00000514743 MPNDQ8N594 471 aa9.37□□□□□ -0.91
PDLIM5-219ENST00000514743 STK26Q9P289 416 aa9.37□□□□□ -0.91
PDLIM5-219ENST00000514743 MS4A1P11836 297 aa9.36□□□□□ -0.91
PDLIM5-219ENST00000514743 RUNDC1Q96C34 613 aa9.36□□□□□ -0.91
PDLIM5-219ENST00000514743 BACH2Q9BYV9 841 aa9.36□□□□□ -0.91
PDLIM5-219ENST00000514743 CDC42BPGQ6DT37 1551 aa9.36□□□□□ -0.91
PDLIM5-219ENST00000514743 MAP2P11137 1827 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-219ENST00000514743 PRAM1Q96QH2 718 aa9.36□□□□□ -0.91
PDLIM5-219ENST00000514743 ATAD2Q6PL18 1390 aa9.36□□□□□ -0.91
PDLIM5-219ENST00000514743 MON2Q7Z3U7 1717 aa9.35□□□□□ -0.91
PDLIM5-219ENST00000514743 UBR1Q8IWV7 1749 aa9.35□□□□□ -0.91
PDLIM5-219ENST00000514743 LETM1O95202 739 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-219ENST00000514743 PDE4AP27815 886 aa9.35□□□□□ -0.91
PDLIM5-219ENST00000514743 TCP11L2Q8N4U5 519 aa9.35□□□□□ -0.91
PDLIM5-219ENST00000514743 AKAP12Q02952 1782 aa9.35□□□□□ -0.91
PDLIM5-219ENST00000514743 CGNQ9P2M7 1197 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-219ENST00000514743 MINK1Q8N4C8 1332 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-219ENST00000514743 RIMS2Q9UQ26 1411 aa9.34□□□□□ -0.91
PDLIM5-219ENST00000514743 TRHP20396 242 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-219ENST00000514743 DNAJC2Q99543 621 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-219ENST00000514743 SETQ01105 290 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-219ENST00000514743 CCDC27Q2M243 656 aa9.34□□□□□ -0.91
PDLIM5-219ENST00000514743 EGFL6Q8IUX8 553 aa9.34□□□□□ -0.91
PDLIM5-219ENST00000514743 TRIM44Q96DX7 344 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-219ENST00000514743 CARD10Q9BWT7 1032 aa9.34□□□□□ -0.91
PDLIM5-219ENST00000514743 RRP7AQ9Y3A4 280 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-219ENST00000514743 ZSCAN20P17040 1043 aaPredicted RBP9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 ZBTB9Q96C00 473 aa9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 SRPK2P78362 688 aaKnown RBP9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 KIAA1211Q6ZU35 1233 aa9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 CENPQQ7L2Z9 268 aaPredicted RBP9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 GTPBP4Q9BZE4 634 aaKnown RBP9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 ATP7BP35670 1465 aa9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 FYB1O15117 783 aa9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 PRR29P0C7W0 189 aa9.33□□□□□ -0.92
PDLIM5-219ENST00000514743 CPS1P31327 1500 aa9.32□□□□□ -0.92
PDLIM5-219ENST00000514743 PLEKHF1Q96S99 279 aa9.32□□□□□ -0.92
PDLIM5-219ENST00000514743 GGNBP2Q9H3C7 697 aa9.32□□□□□ -0.92
PDLIM5-219ENST00000514743 ITSN1Q15811 1721 aa9.32□□□□□ -0.92
PDLIM5-219ENST00000514743 C3P01024 1663 aa9.32□□□□□ -0.92
PDLIM5-219ENST00000514743 LRRC7Q96NW7 1537 aa9.32□□□□□ -0.92
PDLIM5-219ENST00000514743 WDR63Q8IWG1 891 aa9.32□□□□□ -0.92
PDLIM5-219ENST00000514743 PNPLA6Q8IY17 1366 aa9.32□□□□□ -0.92
PDLIM5-219ENST00000514743 CFAP53Q96M91 514 aa9.32□□□□□ -0.92
PDLIM5-219ENST00000514743 NEUROD2Q15784 382 aa9.31□□□□□ -0.92
PDLIM5-219ENST00000514743 MTERF4Q7Z6M4 381 aaKnown RBP9.31□□□□□ -0.92
PDLIM5-219ENST00000514743 CDK19Q9BWU1 502 aa9.31□□□□□ -0.92
PDLIM5-219ENST00000514743 SH3BP1Q9Y3L3 701 aa9.31□□□□□ -0.92
PDLIM5-219ENST00000514743 TOPAZ1Q8N9V7 1692 aa9.31□□□□□ -0.92
PDLIM5-219ENST00000514743 DLG5Q8TDM6 1919 aa9.31□□□□□ -0.92
PDLIM5-219ENST00000514743 NRKQ7Z2Y5 1582 aa9.31□□□□□ -0.92
PDLIM5-219ENST00000514743 SEMA3FQ13275 785 aa9.3□□□□□ -0.92
PDLIM5-219ENST00000514743 RARSP54136 660 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-219ENST00000514743 PDE3AQ14432 1141 aa9.3□□□□□ -0.92
PDLIM5-219ENST00000514743 EP400NLQ6ZTU2 488 aa9.3□□□□□ -0.92
PDLIM5-219ENST00000514743 POGKQ9P215 609 aa9.3□□□□□ -0.92
PDLIM5-219ENST00000514743 IRX5P78411 483 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-219ENST00000514743 METP08581 1390 aa9.3□□□□□ -0.92
PDLIM5-219ENST00000514743 TECPR2O15040 1411 aa9.3□□□□□ -0.92
PDLIM5-219ENST00000514743 CPSF1Q10570 1443 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-219ENST00000514743 BANK1Q8NDB2 785 aa9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 TERF2IPQ9NYB0 399 aa9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 U2AF1L5P0DN76 240 aaPredicted RBP9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 SLC4A3P48751 1232 aa9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 U2AF1Q01081 240 aaKnown RBP eCLIP9.29□□□□□ -0.921e-7■■■■■ 28.2
PDLIM5-219ENST00000514743 WAPLQ7Z5K2 1190 aa9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 ZNF692Q9BU19 519 aaPredicted RBP9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 ZMYM3Q14202 1370 aa9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 IRF6O14896 467 aa9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 IGHDP01880 384 aa9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 CABP1Q9NZU7 370 aa9.29□□□□□ -0.92
PDLIM5-219ENST00000514743 SLC20A2Q08357 652 aa9.28□□□□□ -0.92
PDLIM5-219ENST00000514743 C8orf34Q49A92 452 aa9.28□□□□□ -0.92
PDLIM5-219ENST00000514743 PANK1Q8TE04 598 aa9.28□□□□□ -0.92
PDLIM5-219ENST00000514743 GEMIN8Q9NWZ8 242 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-219ENST00000514743 TNNQ9UQP3 1299 aa9.28□□□□□ -0.92
PDLIM5-219ENST00000514743 ESPNB1AK53 854 aa9.28□□□□□ -0.92
PDLIM5-219ENST00000514743 RIPK4P57078 832 aa9.28□□□□□ -0.92
PDLIM5-219ENST00000514743 STAG3Q9UJ98 1225 aa9.28□□□□□ -0.92
PDLIM5-219ENST00000514743 TRIM35Q9UPQ4 493 aa9.28□□□□□ -0.92
PDLIM5-219ENST00000514743 MLECQ14165 292 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms