RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	CCDC125	Q86Z20	511 aa		9.26	□□□□□ -0.93
MATR3-223	ENST00000514402	CCDC116	Q8IYX3	515 aa		9.26	□□□□□ -0.93
MATR3-223	ENST00000514402	TRIM52	Q96A61	297 aa		9.26	□□□□□ -0.93
MATR3-223	ENST00000514402	KCTD15	Q96SI1	283 aa	Predicted RBP	9.26	□□□□□ -0.93
MATR3-223	ENST00000514402	ATP13A2	Q9NQ11	1180 aa		9.26	□□□□□ -0.93
MATR3-223	ENST00000514402	EMILIN1	Q9Y6C2	1016 aa		9.26	□□□□□ -0.93
MATR3-223	ENST00000514402	NR3C2	P08235	984 aa		9.25	□□□□□ -0.93
MATR3-223	ENST00000514402	FBXO45	P0C2W1	286 aa		9.25	□□□□□ -0.93
MATR3-223	ENST00000514402	WDR4	P57081	412 aa	Known RBP	9.25	□□□□□ -0.93
MATR3-223	ENST00000514402	FLII	Q13045	1269 aa		9.25	□□□□□ -0.93
MATR3-223	ENST00000514402	ZNF787	Q6DD87	383 aa		9.25	□□□□□ -0.93
MATR3-223	ENST00000514402	SENP2	Q9HC62	589 aa		9.25	□□□□□ -0.93
MATR3-223	ENST00000514402	SEPT12	Q8IYM1	358 aa		9.24	□□□□□ -0.93
MATR3-223	ENST00000514402	KIFC2	Q96AC6	838 aa		9.24	□□□□□ -0.93
MATR3-223	ENST00000514402	PGPEP1	Q9NXJ5	209 aa		9.23	□□□□□ -0.93
MATR3-223	ENST00000514402	ESPN	B1AK53	854 aa		9.22	□□□□□ -0.93
MATR3-223	ENST00000514402	ZIC2	O95409	532 aa	Predicted RBP	9.22	□□□□□ -0.93
MATR3-223	ENST00000514402	DACH1	Q9UI36	760 aa		9.22	□□□□□ -0.93
MATR3-223	ENST00000514402	TBC1D2B	Q9UPU7	963 aa		9.22	□□□□□ -0.93
MATR3-223	ENST00000514402	INTS6L	Q5JSJ4	861 aa	Known RBP	9.21	□□□□□ -0.94
MATR3-223	ENST00000514402	ITPKC	Q96DU7	683 aa		9.21	□□□□□ -0.94
MATR3-223	ENST00000514402	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	9.2	□□□□□ -0.94
MATR3-223	ENST00000514402	GMPR2	Q9P2T1	348 aa	Known RBP	9.2	□□□□□ -0.94
MATR3-223	ENST00000514402	WASHC4	Q2M389	1173 aa		9.19	□□□□□ -0.94
MATR3-223	ENST00000514402	TRIM47	Q96LD4	638 aa		9.19	□□□□□ -0.94
MATR3-223	ENST00000514402	PCDHB9	Q9Y5E1	797 aa		9.19	□□□□□ -0.94
MATR3-223	ENST00000514402	SCARF1	Q14162	830 aa		9.18	□□□□□ -0.94
MATR3-223	ENST00000514402	RNF20	Q5VTR2	975 aa		9.18	□□□□□ -0.94
MATR3-223	ENST00000514402	MRPL14	Q6P1L8	145 aa	Known RBP	9.18	□□□□□ -0.94
MATR3-223	ENST00000514402	TRIM46	Q7Z4K8	759 aa		9.18	□□□□□ -0.94
MATR3-223	ENST00000514402	MEIOB	Q8N635	442 aa		9.18	□□□□□ -0.94
MATR3-223	ENST00000514402	ZFAND3	Q9H8U3	227 aa		9.18	□□□□□ -0.94
MATR3-223	ENST00000514402	C11orf95	C9JLR9	678 aa	Predicted RBP	9.17	□□□□□ -0.94
MATR3-223	ENST00000514402	EIF4G2	P78344	907 aa	Known RBP eCLIP	9.17	□□□□□ -0.94
MATR3-223	ENST00000514402	IRF5	Q13568	498 aa		9.17	□□□□□ -0.94
MATR3-223	ENST00000514402	GDPD2	Q9HCC8	539 aa		9.17	□□□□□ -0.94
MATR3-223	ENST00000514402	UPP2	O95045	317 aa		9.16	□□□□□ -0.94
MATR3-223	ENST00000514402	BMP1	P13497	986 aa		9.16	□□□□□ -0.94
MATR3-223	ENST00000514402		Q6ZVU0	165 aa		9.16	□□□□□ -0.94
MATR3-223	ENST00000514402	WWC1	Q8IX03	1113 aa		9.16	□□□□□ -0.94
MATR3-223	ENST00000514402	POTEC	B2RU33	542 aa		9.15	□□□□□ -0.94
MATR3-223	ENST00000514402	SOX11	P35716	441 aa		9.15	□□□□□ -0.94
MATR3-223	ENST00000514402	TSEN34	Q9BSV6	310 aa	Known RBP	9.15	□□□□□ -0.94
MATR3-223	ENST00000514402	COG6	Q9Y2V7	657 aa		9.15	□□□□□ -0.94
MATR3-223	ENST00000514402	RAD21	O60216	631 aa		9.14	□□□□□ -0.95
MATR3-223	ENST00000514402	ABL2	P42684	1182 aa		9.14	□□□□□ -0.95
MATR3-223	ENST00000514402	LINC00528	Q8N1L1	170 aa		9.14	□□□□□ -0.95
MATR3-223	ENST00000514402	ERVH48-1	M5A8F1	160 aa		9.13	□□□□□ -0.95
MATR3-223	ENST00000514402	GIGYF1	O75420	1035 aa	Predicted RBP	9.13	□□□□□ -0.95
MATR3-223	ENST00000514402	ZFP42	Q96MM3	310 aa		9.13	□□□□□ -0.95
MATR3-223	ENST00000514402	UBTF	P17480	764 aa	Known RBP	9.12	□□□□□ -0.95
MATR3-223	ENST00000514402	ZNF784	Q8NCA9	323 aa	Predicted RBP	9.11	□□□□□ -0.95
MATR3-223	ENST00000514402	PURB	Q96QR8	312 aa	Known RBP	9.11	□□□□□ -0.95
MATR3-223	ENST00000514402	CEP126	Q9P2H0	1117 aa		9.11	□□□□□ -0.95
MATR3-223	ENST00000514402	TMPRSS4	Q9NRS4	437 aa		9.1	□□□□□ -0.95
MATR3-223	ENST00000514402	LILRA1	O75019	489 aa		9.09	□□□□□ -0.95
MATR3-223	ENST00000514402	BMP2	P12643	396 aa		9.09	□□□□□ -0.95
MATR3-223	ENST00000514402	SNRPB	P14678	240 aa	Known RBP	9.09	□□□□□ -0.95
MATR3-223	ENST00000514402	RAB15	P59190	212 aa		9.09	□□□□□ -0.95
MATR3-223	ENST00000514402	VAC14	Q08AM6	782 aa		9.09	□□□□□ -0.95
MATR3-223	ENST00000514402	ADH1A	P07327	375 aa		9.08	□□□□□ -0.96
MATR3-223	ENST00000514402	ERVK-9	P63128	1117 aa		9.08	□□□□□ -0.96
MATR3-223	ENST00000514402	CBLB	Q13191	982 aa		9.08	□□□□□ -0.96
MATR3-223	ENST00000514402	SPINT1	O43278	529 aa		9.07	□□□□□ -0.96
MATR3-223	ENST00000514402	CC2D2B	Q6DHV5	1058 aa		9.07	□□□□□ -0.96
MATR3-223	ENST00000514402	SEMA3F	Q13275	785 aa		9.06	□□□□□ -0.96
MATR3-223	ENST00000514402	C6orf118	Q5T5N4	469 aa		9.06	□□□□□ -0.96
MATR3-223	ENST00000514402	POM121	Q96HA1	1249 aa		9.06	□□□□□ -0.96
MATR3-223	ENST00000514402	SOS2	Q07890	1332 aa	Predicted RBP	9.05	□□□□□ -0.96
MATR3-223	ENST00000514402	SLFNL1	Q499Z3	407 aa		9.05	□□□□□ -0.96
MATR3-223	ENST00000514402	NPAS3	Q8IXF0	933 aa		9.05	□□□□□ -0.96
MATR3-223	ENST00000514402	PHTF2	Q8N3S3	785 aa		9.05	□□□□□ -0.96
MATR3-223	ENST00000514402	ZNF775	Q96BV0	537 aa	Predicted RBP	9.05	□□□□□ -0.96
MATR3-223	ENST00000514402	CYLD	Q9NQC7	956 aa		9.05	□□□□□ -0.96
MATR3-223	ENST00000514402	PCDHB11	Q9Y5F2	797 aa		9.05	□□□□□ -0.96
MATR3-223	ENST00000514402	CHIC2	Q9UKJ5	165 aa		9.04	□□□□□ -0.96
MATR3-223	ENST00000514402	ADD1	P35611	737 aa	Known RBP	9.03	□□□□□ -0.96
MATR3-223	ENST00000514402	PTGIR	P43119	386 aa		9.03	□□□□□ -0.96
MATR3-223	ENST00000514402	CYP2U1	Q7Z449	544 aa		9.03	□□□□□ -0.96
MATR3-223	ENST00000514402	TTLL8	A6PVC2	850 aa		9.02	□□□□□ -0.97
MATR3-223	ENST00000514402	ATP5J2-PTCD1	G3V325	749 aa		9.02	□□□□□ -0.97
MATR3-223	ENST00000514402	MAN1A2	O60476	641 aa		9.02	□□□□□ -0.97
MATR3-223	ENST00000514402	MAP7D1	Q3KQU3	841 aa		9.02	□□□□□ -0.97
MATR3-223	ENST00000514402	RNF135	Q8IUD6	432 aa		9.02	□□□□□ -0.97
MATR3-223	ENST00000514402	SIRT1	Q96EB6	747 aa		9.02	□□□□□ -0.97
MATR3-223	ENST00000514402	ESF1	Q9H501	851 aa	Known RBP	9.02	□□□□□ -0.97
MATR3-223	ENST00000514402		A6NJR5	290 aa		9.01	□□□□□ -0.97
MATR3-223	ENST00000514402	TRAK2	O60296	914 aa		9.01	□□□□□ -0.97
MATR3-223	ENST00000514402	MYC	P01106	439 aa	Predicted RBP	9.01	□□□□□ -0.97
MATR3-223	ENST00000514402	RELB	Q01201	579 aa		9.01	□□□□□ -0.97
MATR3-223	ENST00000514402	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	9.01	□□□□□ -0.97
MATR3-223	ENST00000514402	KDF1	Q8NAX2	398 aa	Predicted RBP	9.01	□□□□□ -0.97
MATR3-223	ENST00000514402	AGBL1	Q96MI9	1066 aa		9.01	□□□□□ -0.97
MATR3-223	ENST00000514402	CCDC85A	Q96PX6	553 aa	Predicted RBP	9.01	□□□□□ -0.97
MATR3-223	ENST00000514402	ALG2	Q9H553	416 aa		9.01	□□□□□ -0.97
MATR3-223	ENST00000514402	USP4	Q13107	963 aa		9	□□□□□ -0.97
MATR3-223	ENST00000514402	NXF1	Q9UBU9	619 aa	Known RBP	9	□□□□□ -0.97
MATR3-223	ENST00000514402	DOLK	Q9UPQ8	538 aa		9	□□□□□ -0.97
MATR3-223	ENST00000514402	TERT	O14746	1132 aa	Known RBP	8.99	□□□□□ -0.97
MATR3-223	ENST00000514402	GPC1	P35052	558 aa		8.99	□□□□□ -0.97

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