RNA–Protein interactions for RNA: ENST00000513957.1

NEDD4-210, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-210ENST00000513957 PRDM11Q9NQV5 511 aa11.36□□□□□ -0.59
NEDD4-210ENST00000513957 KIAA0232Q92628 1395 aa11.36□□□□□ -0.59
NEDD4-210ENST00000513957 FAM208AQ9UK61 1670 aaKnown RBP11.36□□□□□ -0.59
NEDD4-210ENST00000513957 VASPP50552 380 aaPredicted RBP11.35□□□□□ -0.59
NEDD4-210ENST00000513957 ILDR2Q71H61 639 aa11.35□□□□□ -0.59
NEDD4-210ENST00000513957 QTRT2Q9H974 415 aaKnown RBP11.35□□□□□ -0.59
NEDD4-210ENST00000513957 GLI3P10071 1580 aa11.35□□□□□ -0.59
NEDD4-210ENST00000513957 AATKQ6ZMQ8 1374 aa11.34□□□□□ -0.59
NEDD4-210ENST00000513957 FAM83GA6ND36 823 aa11.34□□□□□ -0.59
NEDD4-210ENST00000513957 VPS72Q15906 364 aa11.34□□□□□ -0.59
NEDD4-210ENST00000513957 RGPD5Q99666 1765 aa11.33□□□□□ -0.59
NEDD4-210ENST00000513957 WNK3Q9BYP7 1800 aa11.33□□□□□ -0.6
NEDD4-210ENST00000513957 NUTM2GQ5VZR2 741 aa11.33□□□□□ -0.6
NEDD4-210ENST00000513957 BBXQ8WY36 941 aaPredicted RBP11.33□□□□□ -0.6
NEDD4-210ENST00000513957 RGS12O14924 1447 aa11.33□□□□□ -0.6
NEDD4-210ENST00000513957 CAMTA1Q9Y6Y1 1673 aa11.33□□□□□ -0.6
NEDD4-210ENST00000513957 COL5A2P05997 1499 aaPredicted RBP11.32□□□□□ -0.6
NEDD4-210ENST00000513957 SOCS7O14512 581 aa11.32□□□□□ -0.6
NEDD4-210ENST00000513957 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.32□□□□□ -0.6
NEDD4-210ENST00000513957 GJD4Q96KN9 370 aaPredicted RBP11.32□□□□□ -0.6
NEDD4-210ENST00000513957 BTG4Q9NY30 223 aa11.32□□□□□ -0.6
NEDD4-210ENST00000513957 THSD7AQ9UPZ6 1657 aa11.32□□□□□ -0.6
NEDD4-210ENST00000513957 NSD2O96028 1365 aa11.31□□□□□ -0.6
NEDD4-210ENST00000513957 BRWD3Q6RI45 1802 aa11.31□□□□□ -0.6
NEDD4-210ENST00000513957 ZC3H6P61129 1189 aaKnown RBP11.31□□□□□ -0.6
NEDD4-210ENST00000513957 BLMP54132 1417 aaPredicted RBP11.31□□□□□ -0.6
NEDD4-210ENST00000513957 NSD3Q9BZ95 1437 aa11.31□□□□□ -0.6
NEDD4-210ENST00000513957 KIF24Q5T7B8 1368 aa11.3□□□□□ -0.6
NEDD4-210ENST00000513957 PARP4Q9UKK3 1724 aaKnown RBP11.3□□□□□ -0.6
NEDD4-210ENST00000513957 ARHGEF25Q86VW2 580 aa11.3□□□□□ -0.6
NEDD4-210ENST00000513957 NME9Q86XW9 330 aa11.3□□□□□ -0.6
NEDD4-210ENST00000513957 COG3Q96JB2 828 aa11.3□□□□□ -0.6
NEDD4-210ENST00000513957 CGNL1Q0VF96 1302 aa11.3□□□□□ -0.6
NEDD4-210ENST00000513957 RTL1A6NKG5 1358 aa11.29□□□□□ -0.6
NEDD4-210ENST00000513957 CRB1P82279 1406 aa11.29□□□□□ -0.6
NEDD4-210ENST00000513957 PLEKHG5O94827 1062 aa11.29□□□□□ -0.6
NEDD4-210ENST00000513957 ATF5Q9Y2D1 282 aaPredicted RBP11.29□□□□□ -0.6
NEDD4-210ENST00000513957 SPATA31A5Q5VU36 1347 aa11.29□□□□□ -0.6
NEDD4-210ENST00000513957 SPATA31A7Q8IWB4 1347 aa11.29□□□□□ -0.6
NEDD4-210ENST00000513957 MAP2P11137 1827 aaKnown RBP11.28□□□□□ -0.6
NEDD4-210ENST00000513957 ONECUT3O60422 494 aaPredicted RBP11.28□□□□□ -0.6
NEDD4-210ENST00000513957 ZEB1P37275 1124 aaPredicted RBP11.28□□□□□ -0.6
NEDD4-210ENST00000513957 CHRNA2Q15822 529 aa11.28□□□□□ -0.6
NEDD4-210ENST00000513957 THRAP3Q9Y2W1 955 aaKnown RBP11.28□□□□□ -0.6
NEDD4-210ENST00000513957 KIF7Q2M1P5 1343 aa11.28□□□□□ -0.6
NEDD4-210ENST00000513957 TULP1O00294 542 aaPredicted RBP11.27□□□□□ -0.61
NEDD4-210ENST00000513957 FYB1O15117 783 aa11.27□□□□□ -0.61
NEDD4-210ENST00000513957 SAMD1Q6SPF0 538 aaPredicted RBP11.27□□□□□ -0.61
NEDD4-210ENST00000513957 SPATA31A1Q5TZJ5 1347 aa11.27□□□□□ -0.61
NEDD4-210ENST00000513957 EVA1CP58658 441 aa11.26□□□□□ -0.61
NEDD4-210ENST00000513957 BARGINQ6ZT62 677 aa11.26□□□□□ -0.61
NEDD4-210ENST00000513957 CARD14Q9BXL6 1004 aa11.26□□□□□ -0.61
NEDD4-210ENST00000513957 CCDC9Q9Y3X0 531 aaKnown RBP11.26□□□□□ -0.61
NEDD4-210ENST00000513957 WDR17Q8IZU2 1322 aa11.26□□□□□ -0.61
NEDD4-210ENST00000513957 CCDC7Q96M83 1385 aa11.26□□□□□ -0.61
NEDD4-210ENST00000513957 C11orf95C9JLR9 678 aaPredicted RBP11.25□□□□□ -0.61
NEDD4-210ENST00000513957 POLR3GLQ9BT43 218 aa11.25□□□□□ -0.61
NEDD4-210ENST00000513957 LRRC37A3O60309 1634 aa11.24□□□□□ -0.61
NEDD4-210ENST00000513957 STRN4Q9NRL3 753 aa11.24□□□□□ -0.61
NEDD4-210ENST00000513957 ZRANB1Q9UGI0 708 aa11.24□□□□□ -0.61
NEDD4-210ENST00000513957 ERBB3P21860 1342 aa11.24□□□□□ -0.61
NEDD4-210ENST00000513957 SPDYE4A6NLX3 237 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 SOX12O15370 315 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 PAXIP1Q6ZW49 1069 aaPredicted RBP11.23□□□□□ -0.61
NEDD4-210ENST00000513957 IFNLR1Q8IU57 520 aaPredicted RBP11.23□□□□□ -0.61
NEDD4-210ENST00000513957 TCP11L2Q8N4U5 519 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 IP6K1Q92551 441 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 CDCA7Q9BWT1 371 aaPredicted RBP11.23□□□□□ -0.61
NEDD4-210ENST00000513957 GGNBP2Q9H3C7 697 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 PANK3Q9H999 370 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 KNSTRNQ9Y448 316 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 WASHC2AQ641Q2 1341 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 FLT4P35916 1363 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 NPC1L1Q9UHC9 1359 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 SMG6Q86US8 1419 aaKnown RBP11.23□□□□□ -0.61
NEDD4-210ENST00000513957 RGPD1P0DJD0 1748 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 PEAK1Q9H792 1746 aa11.23□□□□□ -0.61
NEDD4-210ENST00000513957 MAP3K19Q56UN5 1328 aa11.22□□□□□ -0.61
NEDD4-210ENST00000513957 LARP1Q6PKG0 1096 aaKnown RBP11.22□□□□□ -0.61
NEDD4-210ENST00000513957 SEPT12Q8IYM1 358 aa11.22□□□□□ -0.61
NEDD4-210ENST00000513957 CARD10Q9BWT7 1032 aa11.22□□□□□ -0.61
NEDD4-210ENST00000513957 GTF3C3Q9Y5Q9 886 aa11.22□□□□□ -0.61
NEDD4-210ENST00000513957 EP400Q96L91 3159 aa11.22□□□□□ -0.61
NEDD4-210ENST00000513957 RGPD2P0DJD1 1756 aa11.21□□□□□ -0.61
NEDD4-210ENST00000513957 ZBTB7CA1YPR0 619 aa11.21□□□□□ -0.61
NEDD4-210ENST00000513957 FAM98CQ17RN3 349 aaKnown RBP11.21□□□□□ -0.61
NEDD4-210ENST00000513957 TOM1L2Q6ZVM7 507 aa11.21□□□□□ -0.61
NEDD4-210ENST00000513957 AXIN2Q9Y2T1 843 aa11.21□□□□□ -0.61
NEDD4-210ENST00000513957 DISP2A7MBM2 1401 aa11.2□□□□□ -0.62
NEDD4-210ENST00000513957 INSRP06213 1382 aa11.2□□□□□ -0.62
NEDD4-210ENST00000513957 CSB-PGBD3P0DP91 1061 aa11.2□□□□□ -0.62
NEDD4-210ENST00000513957 HOXC9P31274 260 aa11.2□□□□□ -0.62
NEDD4-210ENST00000513957 AMPHP49418 695 aa11.2□□□□□ -0.62
NEDD4-210ENST00000513957 CFAP44Q96MT7 982 aa11.2□□□□□ -0.62
NEDD4-210ENST00000513957 PLEKHG2Q9H7P9 1386 aa11.19□□□□□ -0.62
NEDD4-210ENST00000513957 KRT27Q7Z3Y8 459 aa11.19□□□□□ -0.62
NEDD4-210ENST00000513957 CCDC125Q86Z20 511 aa11.19□□□□□ -0.62
NEDD4-210ENST00000513957 PROM2Q8N271 834 aa11.19□□□□□ -0.62
NEDD4-210ENST00000513957 SBF2Q86WG5 1849 aa11.19□□□□□ -0.62
NEDD4-210ENST00000513957 TNS2Q63HR2 1409 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms