RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 NF2P35240 595 aa5.09□□□□□ -1.59
VCAN-209ENST00000513016 TMEM87AQ8NBN3 555 aa5.09□□□□□ -1.59
VCAN-209ENST00000513016 KRT18P05783 430 aaKnown RBP5.09□□□□□ -1.6
VCAN-209ENST00000513016 MYL6BP14649 208 aa5.09□□□□□ -1.6
VCAN-209ENST00000513016 CCDC73Q6ZRK6 1079 aa5.09□□□□□ -1.6
VCAN-209ENST00000513016 PPP1R42Q7Z4L9 355 aa5.09□□□□□ -1.6
VCAN-209ENST00000513016 TRIM22Q8IYM9 498 aa5.09□□□□□ -1.6
VCAN-209ENST00000513016 HDAC9Q9UKV0 1011 aa5.09□□□□□ -1.6
VCAN-209ENST00000513016 DDX11L8A8MPP1 907 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 PIP4K2AP48426 406 aaPredicted RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 SKOR2Q2VWA4 1001 aaPredicted RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 IFNL2Q8IZJ0 200 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 EHMT1Q9H9B1 1298 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 DESP17661 470 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 TCP11L2Q8N4U5 519 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 LRP2BPQ9P2M1 347 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 LMTK3Q96Q04 1460 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 IQGAP2Q13576 1575 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 OFD1O75665 1012 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 SLC12A5Q9H2X9 1139 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 RRP12Q5JTH9 1297 aaKnown RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 FMNL2Q96PY5 1086 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 CDC5LQ99459 802 aaKnown RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 BRD4O60885 1362 aaPredicted RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 CDCA7Q9BWT1 371 aaPredicted RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 DDX46Q7L014 1031 aaKnown RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 BICD2Q8TD16 824 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 WASLO00401 505 aaPredicted RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 SLC4A2P04920 1241 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 STK32BQ9NY57 414 aa5.08□□□□□ -1.6
VCAN-209ENST00000513016 NOL7Q9UMY1 257 aaKnown RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.08□□□□□ -1.6
VCAN-209ENST00000513016 SYCP1Q15431 976 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 CCDC69A6NI79 296 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 ZNF76P36508 570 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 RRP1P56182 461 aaKnown RBP5.07□□□□□ -1.6
VCAN-209ENST00000513016 MPRIPQ6WCQ1 1025 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 SLKQ9H2G2 1235 aaPredicted RBP5.07□□□□□ -1.6
VCAN-209ENST00000513016 ANKIB1Q9P2G1 1089 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 CLEC11AQ9Y240 323 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 CDC45O75419 566 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 FAM161AQ3B820 660 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 METTL24Q5JXM2 366 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 PPP4R3BQ5MIZ7 849 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 PPP4R3AQ6IN85 833 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 OLFM4Q6UX06 510 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 WDR63Q8IWG1 891 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 ZNF622Q969S3 477 aaKnown RBP eCLIP5.07□□□□□ -1.6
VCAN-209ENST00000513016 NAP1L5Q96NT1 182 aaPredicted RBP5.07□□□□□ -1.6
VCAN-209ENST00000513016 TRAF1Q13077 416 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 GCC1Q96CN9 775 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 BMP2KQ9NSY1 1161 aaPredicted RBP5.07□□□□□ -1.6
VCAN-209ENST00000513016 DHX29Q7Z478 1369 aaKnown RBP5.07□□□□□ -1.6
VCAN-209ENST00000513016 FANCAO15360 1455 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 POLR3DP05423 398 aaPredicted RBP5.07□□□□□ -1.6
VCAN-209ENST00000513016 SLC5A1P13866 664 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 PPP2R1AP30153 589 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 USP5P45974 858 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 MCM2P49736 904 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 CCDC173Q0VFZ6 552 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 ANKRD1Q15327 319 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 SPTY2D1Q68D10 685 aaPredicted RBP5.07□□□□□ -1.6
VCAN-209ENST00000513016 C6orf229H3BNL8 230 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 PTCD1O75127 700 aaKnown RBP5.07□□□□□ -1.6
VCAN-209ENST00000513016 PDCP20941 246 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 TDO2P48775 406 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 C8orf37Q96NL8 207 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 ZBED9Q6R2W3 1325 aa5.07□□□□□ -1.6
VCAN-209ENST00000513016 CDKL5O76039 1030 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 TAF7Q15545 349 aaPredicted RBP5.06□□□□□ -1.6
VCAN-209ENST00000513016 DZIP1Q86YF9 867 aaKnown RBP5.06□□□□□ -1.6
VCAN-209ENST00000513016 JMYQ8N9B5 988 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 UBAC1Q9BSL1 405 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 CABP5Q9NP86 173 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 KIF14Q15058 1648 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 TTC21BQ7Z4L5 1316 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 NUCB2P80303 420 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 NFE2L2Q16236 605 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 ZFYVE27Q5T4F4 411 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 TOP2BQ02880 1626 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 UHRF1BP1LA0JNW5 1464 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 ANKRD18BA2A2Z9 1011 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 WASF1Q92558 559 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 C19orf44Q9H6X5 657 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 TRMT112Q9UI30 125 aaKnown RBP5.06□□□□□ -1.6
VCAN-209ENST00000513016 PARP3Q9Y6F1 533 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 IDI1Q13907 227 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 DDB1Q16531 1140 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 CRBNQ96SW2 442 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 CHMP5Q9NZZ3 219 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 MAGEC2Q9UBF1 373 aaPredicted RBP5.06□□□□□ -1.6
VCAN-209ENST00000513016 TTC21AQ8NDW8 1320 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 AMER1Q5JTC6 1135 aaPredicted RBP5.06□□□□□ -1.6
VCAN-209ENST00000513016 SASS6Q6UVJ0 657 aa5.06□□□□□ -1.6
VCAN-209ENST00000513016 ZNF396Q96N95 335 aaPredicted RBP5.06□□□□□ -1.6
VCAN-209ENST00000513016 VPS37CA5D8V6 355 aaPredicted RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 BAG6P46379 1132 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 EXOSC9Q06265 439 aaKnown RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 CUL5Q93034 780 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 FOXD4L1Q9NU39 408 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms