RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CENPJQ9HC77 1338 aaPredicted RBP11.45□□□□□ -0.58
SCN1A-207ENST00000507401 HAP1P54257 671 aaPredicted RBP11.45□□□□□ -0.58
SCN1A-207ENST00000507401 LMOD2Q6P5Q4 547 aa11.45□□□□□ -0.58
SCN1A-207ENST00000507401 GJD4Q96KN9 370 aaPredicted RBP11.45□□□□□ -0.58
SCN1A-207ENST00000507401 CABLES1Q8TDN4 633 aa11.44□□□□□ -0.58
SCN1A-207ENST00000507401 SLIT2O94813 1529 aa11.44□□□□□ -0.58
SCN1A-207ENST00000507401 ATP7BP35670 1465 aa11.44□□□□□ -0.58
SCN1A-207ENST00000507401 ITSN1Q15811 1721 aa11.43□□□□□ -0.58
SCN1A-207ENST00000507401 NBPF8Q3BBV2 869 aa11.43□□□□□ -0.58
SCN1A-207ENST00000507401 TRPM3Q9HCF6 1732 aaPredicted RBP11.43□□□□□ -0.58
SCN1A-207ENST00000507401 RGS12O14924 1447 aa11.43□□□□□ -0.58
SCN1A-207ENST00000507401 POLR3AO14802 1390 aaPredicted RBP11.42□□□□□ -0.58
SCN1A-207ENST00000507401 FAM83GA6ND36 823 aa11.42□□□□□ -0.58
SCN1A-207ENST00000507401 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.42□□□□□ -0.58
SCN1A-207ENST00000507401 ACEP12821 1306 aa11.41□□□□□ -0.58
SCN1A-207ENST00000507401 ALS2Q96Q42 1657 aa11.41□□□□□ -0.58
SCN1A-207ENST00000507401 ONECUT3O60422 494 aaPredicted RBP11.41□□□□□ -0.58
SCN1A-207ENST00000507401 SRPK2P78362 688 aaKnown RBP11.41□□□□□ -0.58
SCN1A-207ENST00000507401 IRX5P78411 483 aaPredicted RBP11.41□□□□□ -0.58
SCN1A-207ENST00000507401 VPS72Q15906 364 aa11.41□□□□□ -0.58
SCN1A-207ENST00000507401 NWD2Q9ULI1 1742 aa11.4□□□□□ -0.58
SCN1A-207ENST00000507401 BRD4O60885 1362 aaPredicted RBP11.4□□□□□ -0.59
SCN1A-207ENST00000507401 EVC2Q86UK5 1308 aa11.39□□□□□ -0.59
SCN1A-207ENST00000507401 TRPM1Q7Z4N2 1603 aa11.39□□□□□ -0.59
SCN1A-207ENST00000507401 PSEN1P49768 467 aa11.39□□□□□ -0.59
SCN1A-207ENST00000507401 CCDC125Q86Z20 511 aa11.39□□□□□ -0.59
SCN1A-207ENST00000507401 CABP2Q9NPB3 220 aa11.39□□□□□ -0.59
SCN1A-207ENST00000507401 ROCK2O75116 1388 aaKnown RBP11.39□□□□□ -0.59
SCN1A-207ENST00000507401 ATAD2Q6PL18 1390 aa11.39□□□□□ -0.59
SCN1A-207ENST00000507401 PDAP1Q13442 181 aaKnown RBP11.38□□□□□ -0.59
SCN1A-207ENST00000507401 RNF25Q96BH1 459 aaPredicted RBP11.38□□□□□ -0.59
SCN1A-207ENST00000507401 TOPAZ1Q8N9V7 1692 aa11.38□□□□□ -0.59
SCN1A-207ENST00000507401 RALGAPBQ86X10 1494 aa11.38□□□□□ -0.59
SCN1A-207ENST00000507401 ABCA3Q99758 1704 aa11.38□□□□□ -0.59
SCN1A-207ENST00000507401 PPIP5K1Q6PFW1 1433 aa11.37□□□□□ -0.59
SCN1A-207ENST00000507401 ABTB2Q8N961 1025 aa11.37□□□□□ -0.59
SCN1A-207ENST00000507401 BTG4Q9NY30 223 aa11.37□□□□□ -0.59
SCN1A-207ENST00000507401 CABP1Q9NZU7 370 aa11.37□□□□□ -0.59
SCN1A-207ENST00000507401 NLRP13Q86W25 1043 aa11.36□□□□□ -0.59
SCN1A-207ENST00000507401 TONSLQ96HA7 1378 aa11.36□□□□□ -0.59
SCN1A-207ENST00000507401 QRICH2Q9H0J4 1663 aa11.36□□□□□ -0.59
SCN1A-207ENST00000507401 COL14A1Q05707 1796 aaKnown RBP11.36□□□□□ -0.59
SCN1A-207ENST00000507401 SEC24BO95487 1268 aa11.35□□□□□ -0.59
SCN1A-207ENST00000507401 CENPBP07199 599 aaPredicted RBP11.35□□□□□ -0.59
SCN1A-207ENST00000507401 PRDM11Q9NQV5 511 aa11.35□□□□□ -0.59
SCN1A-207ENST00000507401 GLI3P10071 1580 aa11.35□□□□□ -0.59
SCN1A-207ENST00000507401 PLCH1Q4KWH8 1693 aa11.35□□□□□ -0.59
SCN1A-207ENST00000507401 SBNO2Q9Y2G9 1366 aa11.34□□□□□ -0.59
SCN1A-207ENST00000507401 SEPT12Q8IYM1 358 aa11.34□□□□□ -0.59
SCN1A-207ENST00000507401 CARD11Q9BXL7 1154 aa11.34□□□□□ -0.59
SCN1A-207ENST00000507401 CCDC9Q9Y3X0 531 aaKnown RBP11.34□□□□□ -0.59
SCN1A-207ENST00000507401 CRYBG1Q9Y4K1 1723 aa11.34□□□□□ -0.59
SCN1A-207ENST00000507401 KIAA0232Q92628 1395 aa11.33□□□□□ -0.6
SCN1A-207ENST00000507401 SLC24A1O60721 1099 aa11.33□□□□□ -0.6
SCN1A-207ENST00000507401 PUS7Q96PZ0 661 aaKnown RBP11.33□□□□□ -0.6
SCN1A-207ENST00000507401 CPDO75976 1380 aa11.32□□□□□ -0.6
SCN1A-207ENST00000507401 GCP02774 474 aa11.32□□□□□ -0.6
SCN1A-207ENST00000507401 ZC3H6P61129 1189 aaKnown RBP11.32□□□□□ -0.6
SCN1A-207ENST00000507401 NUTM2GQ5VZR2 741 aa11.32□□□□□ -0.6
SCN1A-207ENST00000507401 USP19O94966 1318 aa11.32□□□□□ -0.6
SCN1A-207ENST00000507401 SPATA31A5Q5VU36 1347 aa11.32□□□□□ -0.6
SCN1A-207ENST00000507401 SPATA31A7Q8IWB4 1347 aa11.32□□□□□ -0.6
SCN1A-207ENST00000507401 NLRP6P59044 892 aa11.31□□□□□ -0.6
SCN1A-207ENST00000507401 KRT27Q7Z3Y8 459 aa11.31□□□□□ -0.6
SCN1A-207ENST00000507401 TIMELESSQ9UNS1 1208 aa11.31□□□□□ -0.6
SCN1A-207ENST00000507401 USP6P35125 1406 aa11.31□□□□□ -0.6
SCN1A-207ENST00000507401 SSH2Q76I76 1423 aa11.31□□□□□ -0.6
SCN1A-207ENST00000507401 NRAPQ86VF7 1730 aa11.31□□□□□ -0.6
SCN1A-207ENST00000507401 EVA1CP58658 441 aa11.3□□□□□ -0.6
SCN1A-207ENST00000507401 CHRNA2Q15822 529 aa11.3□□□□□ -0.6
SCN1A-207ENST00000507401 MAMSTRQ6ZN01 415 aa11.3□□□□□ -0.6
SCN1A-207ENST00000507401 PDCD7Q8N8D1 485 aaKnown RBP11.3□□□□□ -0.6
SCN1A-207ENST00000507401 PHRF1Q9P1Y6 1649 aaKnown RBP11.3□□□□□ -0.6
SCN1A-207ENST00000507401 PLCG2P16885 1265 aa11.29□□□□□ -0.6
SCN1A-207ENST00000507401 FAM98CQ17RN3 349 aaKnown RBP11.29□□□□□ -0.6
SCN1A-207ENST00000507401 OCEL1Q9H607 264 aa11.29□□□□□ -0.6
SCN1A-207ENST00000507401 BRWD3Q6RI45 1802 aa11.29□□□□□ -0.6
SCN1A-207ENST00000507401 EP400Q96L91 3159 aa11.29□□□□□ -0.6
SCN1A-207ENST00000507401 SPATA31A1Q5TZJ5 1347 aa11.29□□□□□ -0.6
SCN1A-207ENST00000507401 TTC21AQ8NDW8 1320 aa11.29□□□□□ -0.6
SCN1A-207ENST00000507401 BLMP54132 1417 aaPredicted RBP11.28□□□□□ -0.6
SCN1A-207ENST00000507401 CPSF1Q10570 1443 aaKnown RBP11.28□□□□□ -0.6
SCN1A-207ENST00000507401 RIOK3O14730 519 aaKnown RBP11.28□□□□□ -0.6
SCN1A-207ENST00000507401 KCNH5Q8NCM2 988 aa11.28□□□□□ -0.6
SCN1A-207ENST00000507401 TTC21BQ7Z4L5 1316 aa11.28□□□□□ -0.6
SCN1A-207ENST00000507401 CLSPNQ9HAW4 1339 aa11.28□□□□□ -0.6
SCN1A-207ENST00000507401 BARGINQ6ZT62 677 aa11.27□□□□□ -0.61
SCN1A-207ENST00000507401 STRN4Q9NRL3 753 aa11.27□□□□□ -0.61
SCN1A-207ENST00000507401 NRKQ7Z2Y5 1582 aa11.26□□□□□ -0.61
SCN1A-207ENST00000507401 SF3B2Q13435 895 aaKnown RBP11.26□□□□□ -0.61
SCN1A-207ENST00000507401 THRAP3Q9Y2W1 955 aaKnown RBP11.26□□□□□ -0.61
SCN1A-207ENST00000507401 CAMTA1Q9Y6Y1 1673 aa11.26□□□□□ -0.61
SCN1A-207ENST00000507401 AATKQ6ZMQ8 1374 aa11.26□□□□□ -0.61
SCN1A-207ENST00000507401 KTN1Q86UP2 1357 aaKnown RBP11.26□□□□□ -0.61
SCN1A-207ENST00000507401 AKAP12Q02952 1782 aa11.26□□□□□ -0.61
SCN1A-207ENST00000507401 ST20-MTHFSA0A0A6YYL1 179 aa11.25□□□□□ -0.61
SCN1A-207ENST00000507401 A0A0G2JS52 829 aa11.25□□□□□ -0.61
SCN1A-207ENST00000507401 LARP1Q6PKG0 1096 aaKnown RBP11.25□□□□□ -0.61
SCN1A-207ENST00000507401 TESK2Q96S53 571 aa11.25□□□□□ -0.61
SCN1A-207ENST00000507401 TERF2IPQ9NYB0 399 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms