RNA–Protein interactions for RNA: ENST00000498801.5

GARNL3-222, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-222	ENST00000498801	KDM5D	Q9BY66	1539 aa		11.21	□□□□□ -0.61
GARNL3-222	ENST00000498801	CNTLN	Q9NXG0	1405 aa		11.21	□□□□□ -0.61
GARNL3-222	ENST00000498801	KIF15	Q9NS87	1388 aa		11.21	□□□□□ -0.61
GARNL3-222	ENST00000498801	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.21	□□□□□ -0.61
GARNL3-222	ENST00000498801	NDUFV2	P19404	249 aa		11.21	□□□□□ -0.61
GARNL3-222	ENST00000498801	GJA5	P36382	358 aa		11.21	□□□□□ -0.61
GARNL3-222	ENST00000498801	RFC5	P40937	340 aa		11.21	□□□□□ -0.61
GARNL3-222	ENST00000498801	HDGF	P51858	240 aa	Known RBP	11.21	□□□□□ -0.61
GARNL3-222	ENST00000498801	SAMD7	Q7Z3H4	446 aa		11.21	□□□□□ -0.61
GARNL3-222	ENST00000498801	PRDM15	P57071	1507 aa	Predicted RBP	11.2	□□□□□ -0.62
GARNL3-222	ENST00000498801	PTPRM	P28827	1452 aa		11.2	□□□□□ -0.62
GARNL3-222	ENST00000498801	PTPRK	Q15262	1439 aa		11.2	□□□□□ -0.62
GARNL3-222	ENST00000498801	ANKRD30A	Q9BXX3	1397 aa		11.2	□□□□□ -0.62
GARNL3-222	ENST00000498801	HOXA2	O43364	376 aa		11.2	□□□□□ -0.62
GARNL3-222	ENST00000498801	USP46	P62068	366 aa		11.2	□□□□□ -0.62
GARNL3-222	ENST00000498801	PPP2R2D	Q66LE6	453 aa		11.2	□□□□□ -0.62
GARNL3-222	ENST00000498801	SLF2	Q8IX21	1173 aa		11.2	□□□□□ -0.62
GARNL3-222	ENST00000498801	SLC4A3	P48751	1232 aa		11.19	□□□□□ -0.62
GARNL3-222	ENST00000498801	LSM11	P83369	360 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
GARNL3-222	ENST00000498801	FAM50A	Q14320	339 aa	Known RBP	11.19	□□□□□ -0.62
GARNL3-222	ENST00000498801	CSPP1	Q1MSJ5	1256 aa		11.19	□□□□□ -0.62
GARNL3-222	ENST00000498801	MROH1	Q8NDA8	1641 aa		11.19	□□□□□ -0.62
GARNL3-222	ENST00000498801	DEPDC5	O75140	1603 aa		11.18	□□□□□ -0.62
GARNL3-222	ENST00000498801	ADGRD1	Q6QNK2	874 aa		11.18	□□□□□ -0.62
GARNL3-222	ENST00000498801	MROH2A	A6NES4	1674 aa		11.17	□□□□□ -0.62
GARNL3-222	ENST00000498801	QPCT	Q16769	361 aa		11.17	□□□□□ -0.62
GARNL3-222	ENST00000498801	ZFR	Q96KR1	1074 aa	Known RBP	11.17	□□□□□ -0.62
GARNL3-222	ENST00000498801	PCDHB15	Q9Y5E8	787 aa		11.17	□□□□□ -0.62
GARNL3-222	ENST00000498801	VWDE	Q8N2E2	1590 aa		11.16	□□□□□ -0.62
GARNL3-222	ENST00000498801	LILRB3	O75022	631 aa		11.16	□□□□□ -0.62
GARNL3-222	ENST00000498801	RNF40	O75150	1001 aa		11.16	□□□□□ -0.62
GARNL3-222	ENST00000498801	MRPL50	Q8N5N7	158 aa	Known RBP	11.16	□□□□□ -0.62
GARNL3-222	ENST00000498801	LMTK2	Q8IWU2	1503 aa		11.15	□□□□□ -0.62
GARNL3-222	ENST00000498801	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.15	□□□□□ -0.62
GARNL3-222	ENST00000498801	ZC3H13	Q5T200	1668 aa	Known RBP	11.15	□□□□□ -0.62
GARNL3-222	ENST00000498801	SPDYE5	A6NIY4	337 aa		11.15	□□□□□ -0.62
GARNL3-222	ENST00000498801	CFH	P08603	1231 aa		11.15	□□□□□ -0.62
GARNL3-222	ENST00000498801	BANK1	Q8NDB2	785 aa		11.15	□□□□□ -0.62
GARNL3-222	ENST00000498801	NPAT	Q14207	1427 aa		11.15	□□□□□ -0.62
GARNL3-222	ENST00000498801	FER1L4	A9Z1Z3	1794 aa		11.15	□□□□□ -0.62
GARNL3-222	ENST00000498801	FDX1	P10109	184 aa		11.14	□□□□□ -0.63
GARNL3-222	ENST00000498801	TMEM259	Q4ZIN3	620 aa		11.14	□□□□□ -0.63
GARNL3-222	ENST00000498801	HLA-C	Q95604	372 aa		11.14	□□□□□ -0.63
GARNL3-222	ENST00000498801	CLUAP1	Q96AJ1	413 aa		11.14	□□□□□ -0.63
GARNL3-222	ENST00000498801	HFM1	A2PYH4	1435 aa		11.14	□□□□□ -0.63
GARNL3-222	ENST00000498801	ABCC3	O15438	1527 aa		11.14	□□□□□ -0.63
GARNL3-222	ENST00000498801	ANKRD50	Q9ULJ7	1429 aa		11.13	□□□□□ -0.63
GARNL3-222	ENST00000498801		A6NJR5	290 aa		11.13	□□□□□ -0.63
GARNL3-222	ENST00000498801	HR	O43593	1189 aa		11.13	□□□□□ -0.63
GARNL3-222	ENST00000498801	GUCA2A	Q02747	115 aa		11.13	□□□□□ -0.63
GARNL3-222	ENST00000498801	PRPF38B	Q5VTL8	546 aa	Known RBP	11.13	□□□□□ -0.63
GARNL3-222	ENST00000498801	CABLES1	Q8TDN4	633 aa		11.13	□□□□□ -0.63
GARNL3-222	ENST00000498801	MYT1L	Q9UL68	1186 aa		11.13	□□□□□ -0.63
GARNL3-222	ENST00000498801	UNC13B	O14795	1591 aa		11.12	□□□□□ -0.63
GARNL3-222	ENST00000498801	ARHGAP31	Q2M1Z3	1444 aa		11.12	□□□□□ -0.63
GARNL3-222	ENST00000498801	RIMS1	Q86UR5	1692 aa	Known RBP	11.12	□□□□□ -0.63
GARNL3-222	ENST00000498801	SNRK	Q9NRH2	765 aa		11.12	□□□□□ -0.63
GARNL3-222	ENST00000498801	PZP	P20742	1482 aa		11.12	□□□□□ -0.63
GARNL3-222	ENST00000498801	FUT2	Q10981	343 aa		11.11	□□□□□ -0.63
GARNL3-222	ENST00000498801	RTL5	Q5HYW3	569 aa	Predicted RBP	11.11	□□□□□ -0.63
GARNL3-222	ENST00000498801	LRCH3	Q96II8	777 aa		11.11	□□□□□ -0.63
GARNL3-222	ENST00000498801	ZBTB3	Q9H5J0	574 aa		11.11	□□□□□ -0.63
GARNL3-222	ENST00000498801	PCDHGC3	Q9UN70	934 aa		11.11	□□□□□ -0.63
GARNL3-222	ENST00000498801	NAIP	Q13075	1403 aa		11.1	□□□□□ -0.63
GARNL3-222	ENST00000498801	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.1	□□□□□ -0.63
GARNL3-222	ENST00000498801	NUTM2E	B1AL46	878 aa	Predicted RBP	11.1	□□□□□ -0.63
GARNL3-222	ENST00000498801	HRC	P23327	699 aa		11.1	□□□□□ -0.63
GARNL3-222	ENST00000498801	ITGAE	P38570	1179 aa		11.1	□□□□□ -0.63
GARNL3-222	ENST00000498801	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.1	□□□□□ -0.63
GARNL3-222	ENST00000498801	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.1	□□□□□ -0.63
GARNL3-222	ENST00000498801	GCC2	Q8IWJ2	1684 aa		11.09	□□□□□ -0.63
GARNL3-222	ENST00000498801	KIF3B	O15066	747 aa		11.09	□□□□□ -0.63
GARNL3-222	ENST00000498801	POM121	Q96HA1	1249 aa		11.09	□□□□□ -0.63
GARNL3-222	ENST00000498801	RRP7BP	Q9NSQ0	103 aa		11.09	□□□□□ -0.63
GARNL3-222	ENST00000498801	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.09	□□□□□ -0.63
GARNL3-222	ENST00000498801	C3	P01024	1663 aa		11.08	□□□□□ -0.64
GARNL3-222	ENST00000498801	LMTK3	Q96Q04	1460 aa		11.08	□□□□□ -0.64
GARNL3-222	ENST00000498801	ZMYM3	Q14202	1370 aa		11.08	□□□□□ -0.64
GARNL3-222	ENST00000498801	KMT5B	Q4FZB7	885 aa		11.08	□□□□□ -0.64
GARNL3-222	ENST00000498801	GRIPAP1	Q4V328	841 aa		11.08	□□□□□ -0.64
GARNL3-222	ENST00000498801	MTMR14	Q8NCE2	650 aa		11.08	□□□□□ -0.64
GARNL3-222	ENST00000498801	NECTIN2	Q92692	538 aa		11.08	□□□□□ -0.64
GARNL3-222	ENST00000498801	EFCAB6	Q5THR3	1501 aa		11.08	□□□□□ -0.64
GARNL3-222	ENST00000498801	SPATA31D1	Q6ZQQ2	1576 aa		11.07	□□□□□ -0.64
GARNL3-222	ENST00000498801	RPRD2	Q5VT52	1461 aa	Known RBP	11.07	□□□□□ -0.64
GARNL3-222	ENST00000498801	TRIM26	Q12899	539 aa	Predicted RBP	11.07	□□□□□ -0.64
GARNL3-222	ENST00000498801	MLEC	Q14165	292 aa		11.07	□□□□□ -0.64
GARNL3-222	ENST00000498801	ANKRD13D	Q6ZTN6	518 aa		11.07	□□□□□ -0.64
GARNL3-222	ENST00000498801	CHIC2	Q9UKJ5	165 aa		11.07	□□□□□ -0.64
GARNL3-222	ENST00000498801	CLTC	Q00610	1675 aa	Known RBP	11.06	□□□□□ -0.64
GARNL3-222	ENST00000498801	AP1G2	O75843	785 aa		11.06	□□□□□ -0.64
GARNL3-222	ENST00000498801	ATP6V1A	P38606	617 aa		11.06	□□□□□ -0.64
GARNL3-222	ENST00000498801	ANKK1	Q8NFD2	765 aa		11.06	□□□□□ -0.64
GARNL3-222	ENST00000498801	CAMSAP1	Q5T5Y3	1602 aa		11.06	□□□□□ -0.64
GARNL3-222	ENST00000498801	IQGAP3	Q86VI3	1631 aa		11.06	□□□□□ -0.64
GARNL3-222	ENST00000498801	RAD21	O60216	631 aa		11.05	□□□□□ -0.64
GARNL3-222	ENST00000498801	TRAK2	O60296	914 aa		11.05	□□□□□ -0.64
GARNL3-222	ENST00000498801	MTMR2	Q13614	643 aa		11.05	□□□□□ -0.64
GARNL3-222	ENST00000498801	GGT6	Q6P531	493 aa		11.05	□□□□□ -0.64
GARNL3-222	ENST00000498801	PROSER2	Q86WR7	435 aa	Predicted RBP	11.05	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms