RNA–Protein interactions for RNA: ENST00000496910.1

EXOSC3-208, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 217 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-208ENST00000496910 CARD14Q9BXL6 1004 aa6.32□□□□□ -1.4
EXOSC3-208ENST00000496910 MAGEB6P1A0A0J9YX57 407 aa6.31□□□□□ -1.4
EXOSC3-208ENST00000496910 ESPNB1AK53 854 aa6.31□□□□□ -1.4
EXOSC3-208ENST00000496910 GDF9O60383 454 aa6.31□□□□□ -1.4
EXOSC3-208ENST00000496910 CD2BP2O95400 341 aaKnown RBP6.31□□□□□ -1.4
EXOSC3-208ENST00000496910 VARSP26640 1264 aaKnown RBP6.31□□□□□ -1.4
EXOSC3-208ENST00000496910 WWC1Q8IX03 1113 aa6.31□□□□□ -1.4
EXOSC3-208ENST00000496910 MPNDQ8N594 471 aa6.31□□□□□ -1.4
EXOSC3-208ENST00000496910 CHIC2Q9UKJ5 165 aa6.31□□□□□ -1.4
EXOSC3-208ENST00000496910 PIK3CDO00329 1044 aa6.3□□□□□ -1.4
EXOSC3-208ENST00000496910 EIF4G2P78344 907 aaKnown RBP eCLIP6.3□□□□□ -1.4
EXOSC3-208ENST00000496910 ZNF697Q5TEC3 545 aa6.3□□□□□ -1.4
EXOSC3-208ENST00000496910 CCDC82Q8N4S0 544 aa6.3□□□□□ -1.4
EXOSC3-208ENST00000496910 FAM174AQ8TBP5 190 aa6.3□□□□□ -1.4
EXOSC3-208ENST00000496910 MRGPRX2Q96LB1 330 aa6.3□□□□□ -1.4
EXOSC3-208ENST00000496910 CDK15Q96Q40 435 aa6.3□□□□□ -1.4
EXOSC3-208ENST00000496910 MAP4K5Q9Y4K4 846 aa6.3□□□□□ -1.4
EXOSC3-208ENST00000496910 NACADO15069 1562 aa6.3□□□□□ -1.4
EXOSC3-208ENST00000496910 GRM5P41594 1212 aa6.29□□□□□ -1.4
EXOSC3-208ENST00000496910 CEP126Q9P2H0 1117 aa6.29□□□□□ -1.4
EXOSC3-208ENST00000496910 TLL2Q9Y6L7 1015 aa6.29□□□□□ -1.4
EXOSC3-208ENST00000496910 RGS20O76081 388 aa6.28□□□□□ -1.4
EXOSC3-208ENST00000496910 CFAP70Q5T0N1 1121 aa6.28□□□□□ -1.4
EXOSC3-208ENST00000496910 ZBTB33Q86T24 672 aa6.28□□□□□ -1.4
EXOSC3-208ENST00000496910 EHBP1Q8NDI1 1231 aa6.28□□□□□ -1.4
EXOSC3-208ENST00000496910 PCDHB9Q9Y5E1 797 aa6.28□□□□□ -1.4
EXOSC3-208ENST00000496910 NESP48681 1621 aa6.28□□□□□ -1.4
EXOSC3-208ENST00000496910 CCDC180Q9P1Z9 1646 aa6.28□□□□□ -1.4
EXOSC3-208ENST00000496910 SHROOM4Q9ULL8 1493 aa6.28□□□□□ -1.4
EXOSC3-208ENST00000496910 GIGYF1O75420 1035 aaPredicted RBP6.27□□□□□ -1.41
EXOSC3-208ENST00000496910 MCCD1P59942 119 aaPredicted RBP6.27□□□□□ -1.41
EXOSC3-208ENST00000496910 SRPK2P78362 688 aaKnown RBP6.27□□□□□ -1.41
EXOSC3-208ENST00000496910 SEMA3FQ13275 785 aa6.27□□□□□ -1.41
EXOSC3-208ENST00000496910 AGERQ15109 404 aa6.27□□□□□ -1.41
EXOSC3-208ENST00000496910 CALR3Q96L12 384 aaKnown RBP6.27□□□□□ -1.41
EXOSC3-208ENST00000496910 PRR20EP86478 221 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 PRR20CP86479 221 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 PRR20DP86480 221 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 PRR20BP86481 221 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 PRR20AP86496 221 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 TSGA10IPQ3SY00 556 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 TRAF7Q6Q0C0 670 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 TBC1D9Q6ZT07 1266 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 NFATC2IPQ8NCF5 419 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 SLC10A4Q96EP9 437 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 CCDC85AQ96PX6 553 aaPredicted RBP6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 PPP1R12CQ9BZL4 782 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 TOR4AQ9NXH8 423 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 SMARCA2P51531 1590 aa6.26□□□□□ -1.41
EXOSC3-208ENST00000496910 PALM3A6NDB9 673 aaPredicted RBP6.25□□□□□ -1.41
EXOSC3-208ENST00000496910 INTS6LQ5JSJ4 861 aaKnown RBP6.25□□□□□ -1.41
EXOSC3-208ENST00000496910 DZIP3Q86Y13 1208 aaKnown RBP6.25□□□□□ -1.41
EXOSC3-208ENST00000496910 KCTD15Q96SI1 283 aaPredicted RBP6.25□□□□□ -1.41
EXOSC3-208ENST00000496910 ADH1CP00326 375 aa6.24□□□□□ -1.41
EXOSC3-208ENST00000496910 NR3C2P08235 984 aa6.24□□□□□ -1.41
EXOSC3-208ENST00000496910 SERPINA10Q9UK55 444 aa6.24□□□□□ -1.41
EXOSC3-208ENST00000496910 CDV3Q9UKY7 258 aaKnown RBP6.24□□□□□ -1.41
EXOSC3-208ENST00000496910 MAFBQ9Y5Q3 323 aaPredicted RBP6.24□□□□□ -1.41
EXOSC3-208ENST00000496910 TNFRSF10AO00220 468 aa6.23□□□□□ -1.41
EXOSC3-208ENST00000496910 ATP9BO43861 1147 aa6.23□□□□□ -1.41
EXOSC3-208ENST00000496910 SMPD1P17405 629 aa6.23□□□□□ -1.41
EXOSC3-208ENST00000496910 FOXC1Q12948 553 aa6.23□□□□□ -1.41
EXOSC3-208ENST00000496910 NBPF20Q3BBV1 942 aa6.23□□□□□ -1.41
EXOSC3-208ENST00000496910 KLF16Q9BXK1 252 aaPredicted RBP6.23□□□□□ -1.41
EXOSC3-208ENST00000496910 TFIP11Q9UBB9 837 aaKnown RBP6.23□□□□□ -1.41
EXOSC3-208ENST00000496910 J3QL48 77 aa6.22□□□□□ -1.41
EXOSC3-208ENST00000496910 FSHRP23945 695 aa6.22□□□□□ -1.41
EXOSC3-208ENST00000496910 VASH1Q7L8A9 365 aaPredicted RBP6.22□□□□□ -1.41
EXOSC3-208ENST00000496910 PLEKHM2Q8IWE5 1019 aa6.22□□□□□ -1.41
EXOSC3-208ENST00000496910 SEPT12Q8IYM1 358 aa6.22□□□□□ -1.41
EXOSC3-208ENST00000496910 SNIP1Q8TAD8 396 aaKnown RBP6.22□□□□□ -1.41
EXOSC3-208ENST00000496910 ZNF592Q92610 1267 aa6.22□□□□□ -1.41
EXOSC3-208ENST00000496910 CDCA7Q9BWT1 371 aaPredicted RBP6.22□□□□□ -1.41
EXOSC3-208ENST00000496910 KIF13AQ9H1H9 1805 aa6.21□□□□□ -1.42
EXOSC3-208ENST00000496910 USP17L5A8MUK1 530 aa6.21□□□□□ -1.42
EXOSC3-208ENST00000496910 ERVH48-1M5A8F1 160 aa6.21□□□□□ -1.42
EXOSC3-208ENST00000496910 KANK4Q5T7N3 995 aaPredicted RBP6.21□□□□□ -1.42
EXOSC3-208ENST00000496910 RNF135Q8IUD6 432 aa6.21□□□□□ -1.42
EXOSC3-208ENST00000496910 PLPP7Q8NBV4 271 aa6.21□□□□□ -1.42
EXOSC3-208ENST00000496910 USP17L3A6NCW0 530 aa6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 USP17L4A6NCW7 530 aa6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 LILRA1O75019 489 aa6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 SCTRP47872 440 aa6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 NR5A1Q13285 461 aa6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 SLFNL1Q499Z3 407 aa6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 USP17L2Q6R6M4 530 aa6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 USP17L1Q7RTZ2 530 aa6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 CCDC97Q96F63 343 aaPredicted RBP6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 KDM6BO15054 1643 aa6.2□□□□□ -1.42
EXOSC3-208ENST00000496910 ALDH1A1P00352 501 aa6.19□□□□□ -1.42
EXOSC3-208ENST00000496910 SKIP12755 728 aa6.19□□□□□ -1.42
EXOSC3-208ENST00000496910 ERVK-9P63128 1117 aa6.19□□□□□ -1.42
EXOSC3-208ENST00000496910 NNTQ13423 1086 aa6.19□□□□□ -1.42
EXOSC3-208ENST00000496910 NCOA4Q13772 614 aa6.19□□□□□ -1.42
EXOSC3-208ENST00000496910 ARID5BQ14865 1188 aa6.19□□□□□ -1.42
EXOSC3-208ENST00000496910 MAP7D1Q3KQU3 841 aa6.19□□□□□ -1.42
EXOSC3-208ENST00000496910 ARID3AQ99856 593 aa6.19□□□□□ -1.42
EXOSC3-208ENST00000496910 TMPRSS4Q9NRS4 437 aa6.19□□□□□ -1.42
EXOSC3-208ENST00000496910 MED1Q15648 1581 aaPredicted RBP6.18□□□□□ -1.42
EXOSC3-208ENST00000496910 DKK1O94907 266 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms