RNA–Protein interactions for RNA: ENST00000496462.1

U2AF1-212, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 3,973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-212ENST00000496462 CCER2I3L3R5 266 aa11.34□□□□□ -0.59
U2AF1-212ENST00000496462 ARHGEF28Q8N1W1 1705 aaKnown RBP11.34□□□□□ -0.59
U2AF1-212ENST00000496462 EXOC5O00471 708 aa11.34□□□□□ -0.59
U2AF1-212ENST00000496462 PRKRIP1Q9H875 184 aaPredicted RBP11.34□□□□□ -0.59
U2AF1-212ENST00000496462 PXDNQ92626 1479 aa11.34□□□□□ -0.59
U2AF1-212ENST00000496462 ITSN1Q15811 1721 aa11.33□□□□□ -0.6
U2AF1-212ENST00000496462 UNC5CLQ8IV45 518 aa11.33□□□□□ -0.6
U2AF1-212ENST00000496462 GAS2L2Q8NHY3 880 aa11.33□□□□□ -0.6
U2AF1-212ENST00000496462 USP31Q70CQ4 1352 aa11.33□□□□□ -0.6
U2AF1-212ENST00000496462 NHSL1Q5SYE7 1610 aa11.33□□□□□ -0.6
U2AF1-212ENST00000496462 PPP2R1AP30153 589 aa11.33□□□□□ -0.6
U2AF1-212ENST00000496462 FAM83GA6ND36 823 aa11.32□□□□□ -0.6
U2AF1-212ENST00000496462 AMOTQ4VCS5 1084 aa11.32□□□□□ -0.6
U2AF1-212ENST00000496462 RTL1A6NKG5 1358 aa11.32□□□□□ -0.6
U2AF1-212ENST00000496462 FNBP4Q8N3X1 1017 aaPredicted RBP11.32□□□□□ -0.6
U2AF1-212ENST00000496462 NGEFQ8N5V2 710 aa11.32□□□□□ -0.6
U2AF1-212ENST00000496462 GJD4Q96KN9 370 aaPredicted RBP11.32□□□□□ -0.6
U2AF1-212ENST00000496462 FMN2Q9NZ56 1722 aa11.32□□□□□ -0.6
U2AF1-212ENST00000496462 CPSF1Q10570 1443 aaKnown RBP11.31□□□□□ -0.6
U2AF1-212ENST00000496462 CARD14Q9BXL6 1004 aa11.31□□□□□ -0.6
U2AF1-212ENST00000496462 AMER1Q5JTC6 1135 aaPredicted RBP11.31□□□□□ -0.6
U2AF1-212ENST00000496462 ARHGEF25Q86VW2 580 aa11.31□□□□□ -0.6
U2AF1-212ENST00000496462 KIAA0232Q92628 1395 aa11.31□□□□□ -0.6
U2AF1-212ENST00000496462 TCP11L2Q8N4U5 519 aa11.3□□□□□ -0.6
U2AF1-212ENST00000496462 SHPRHQ149N8 1683 aa11.3□□□□□ -0.6
U2AF1-212ENST00000496462 FAM98CQ17RN3 349 aaKnown RBP11.3□□□□□ -0.6
U2AF1-212ENST00000496462 THRAP3Q9Y2W1 955 aaKnown RBP11.3□□□□□ -0.6
U2AF1-212ENST00000496462 MAP3K19Q56UN5 1328 aa11.3□□□□□ -0.6
U2AF1-212ENST00000496462 EMILIN1Q9Y6C2 1016 aa11.3□□□□□ -0.6
U2AF1-212ENST00000496462 RGPD8O14715 1765 aaPredicted RBP11.3□□□□□ -0.6
U2AF1-212ENST00000496462 AATKQ6ZMQ8 1374 aa11.3□□□□□ -0.6
U2AF1-212ENST00000496462 HOXC9P31274 260 aa11.29□□□□□ -0.6
U2AF1-212ENST00000496462 IL2RBP14784 551 aa11.29□□□□□ -0.6
U2AF1-212ENST00000496462 TEFQ10587 303 aa11.29□□□□□ -0.6
U2AF1-212ENST00000496462 DDB1Q16531 1140 aa11.29□□□□□ -0.6
U2AF1-212ENST00000496462 ZRANB1Q9UGI0 708 aa11.28□□□□□ -0.6
U2AF1-212ENST00000496462 SULT6B1Q6IMI4 303 aa11.28□□□□□ -0.6
U2AF1-212ENST00000496462 USP19O94966 1318 aa11.28□□□□□ -0.6
U2AF1-212ENST00000496462 FCHSD2O94868 740 aa11.27□□□□□ -0.6
U2AF1-212ENST00000496462 SEPT12Q8IYM1 358 aa11.27□□□□□ -0.6
U2AF1-212ENST00000496462 POLKQ9UBT6 870 aa11.27□□□□□ -0.61
U2AF1-212ENST00000496462 CARD10Q9BWT7 1032 aa11.26□□□□□ -0.61
U2AF1-212ENST00000496462 ZNF530Q6P9A1 599 aaPredicted RBP11.26□□□□□ -0.61
U2AF1-212ENST00000496462 BLMP54132 1417 aaPredicted RBP11.26□□□□□ -0.61
U2AF1-212ENST00000496462 WDR17Q8IZU2 1322 aa11.26□□□□□ -0.61
U2AF1-212ENST00000496462 DDX54Q8TDD1 881 aaKnown RBP11.26□□□□□ -0.61
U2AF1-212ENST00000496462 INSRP06213 1382 aa11.26□□□□□ -0.61
U2AF1-212ENST00000496462 CENPBP07199 599 aaPredicted RBP11.26□□□□□ -0.61
U2AF1-212ENST00000496462 FAM182BQ5T319 152 aa11.26□□□□□ -0.61
U2AF1-212ENST00000496462 UPF1Q92900 1129 aaKnown RBP eCLIP11.26□□□□□ -0.61
U2AF1-212ENST00000496462 SYTL4Q96C24 671 aaPredicted RBP11.26□□□□□ -0.61
U2AF1-212ENST00000496462 PER1O15534 1290 aaPredicted RBP11.25□□□□□ -0.61
U2AF1-212ENST00000496462 NEUROD2Q15784 382 aa11.25□□□□□ -0.61
U2AF1-212ENST00000496462 VPS72Q15906 364 aa11.25□□□□□ -0.61
U2AF1-212ENST00000496462 TTC5Q8N0Z6 440 aa11.25□□□□□ -0.61
U2AF1-212ENST00000496462 ZCRB1Q8TBF4 217 aaKnown RBP11.25□□□□□ -0.61
U2AF1-212ENST00000496462 RUNDC1Q96C34 613 aa11.25□□□□□ -0.61
U2AF1-212ENST00000496462 CPDO75976 1380 aa11.25□□□□□ -0.61
U2AF1-212ENST00000496462 HSP90AB2PQ58FF8 381 aa11.25□□□□□ -0.61
U2AF1-212ENST00000496462 BCL9LQ86UU0 1499 aa11.24□□□□□ -0.61
U2AF1-212ENST00000496462 HMOX1P09601 288 aa11.24□□□□□ -0.61
U2AF1-212ENST00000496462 IFNL2Q8IZJ0 200 aa11.24□□□□□ -0.61
U2AF1-212ENST00000496462 USP32Q8NFA0 1604 aa11.24□□□□□ -0.61
U2AF1-212ENST00000496462 RGS12O14924 1447 aa11.24□□□□□ -0.61
U2AF1-212ENST00000496462 PNISRQ8TF01 805 aaKnown RBP11.23□□□□□ -0.61
U2AF1-212ENST00000496462 PRKAR2BP31323 418 aa11.23□□□□□ -0.61
U2AF1-212ENST00000496462 HNRNPUQ00839 825 aaKnown RBP eCLIP11.22□□□□□ -0.61
U2AF1-212ENST00000496462 LARP1Q6PKG0 1096 aaKnown RBP11.22□□□□□ -0.61
U2AF1-212ENST00000496462 KRT27Q7Z3Y8 459 aa11.22□□□□□ -0.61
U2AF1-212ENST00000496462 EIF4A2Q14240 407 aaKnown RBP11.22□□□□□ -0.61
U2AF1-212ENST00000496462 CABP4P57796 275 aa11.21□□□□□ -0.61
U2AF1-212ENST00000496462 YTHDC1Q96MU7 727 aaKnown RBP11.21□□□□□ -0.61
U2AF1-212ENST00000496462 LAS1LQ9Y4W2 734 aaKnown RBP11.21□□□□□ -0.61
U2AF1-212ENST00000496462 PCDH11XQ9BZA7 1347 aa11.21□□□□□ -0.61
U2AF1-212ENST00000496462 PCDH11YQ9BZA8 1340 aa11.21□□□□□ -0.61
U2AF1-212ENST00000496462 ATRNO75882 1429 aa11.21□□□□□ -0.61
U2AF1-212ENST00000496462 ERBB3P21860 1342 aa11.21□□□□□ -0.62
U2AF1-212ENST00000496462 SMARCC1Q92922 1105 aaPredicted RBP11.2□□□□□ -0.62
U2AF1-212ENST00000496462 MYH16Q9H6N6 1097 aa11.2□□□□□ -0.62
U2AF1-212ENST00000496462 PARD3Q8TEW0 1356 aa11.2□□□□□ -0.62
U2AF1-212ENST00000496462 MIER1Q8N108 512 aa11.2□□□□□ -0.62
U2AF1-212ENST00000496462 SALL2Q9Y467 1007 aaPredicted RBP11.2□□□□□ -0.62
U2AF1-212ENST00000496462 FAM196AQ6ZSG2 479 aa11.2□□□□□ -0.62
U2AF1-212ENST00000496462 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.2□□□□□ -0.62
U2AF1-212ENST00000496462 SLIT2O94813 1529 aa11.19□□□□□ -0.62
U2AF1-212ENST00000496462 OVOS2A0A0J9YW53 1432 aa11.19□□□□□ -0.62
U2AF1-212ENST00000496462 CRB1P82279 1406 aa11.19□□□□□ -0.62
U2AF1-212ENST00000496462 OVOS2Q6IE36 1432 aa11.19□□□□□ -0.62
U2AF1-212ENST00000496462 TMOD3Q9NYL9 352 aa11.19□□□□□ -0.62
U2AF1-212ENST00000496462 CANXP27824 592 aaKnown RBP11.19□□□□□ -0.62
U2AF1-212ENST00000496462 RIPK4P57078 832 aa11.19□□□□□ -0.62
U2AF1-212ENST00000496462 USHBP1Q8N6Y0 703 aa11.19□□□□□ -0.62
U2AF1-212ENST00000496462 EYA1Q99502 592 aa11.19□□□□□ -0.62
U2AF1-212ENST00000496462 GNAT3A8MTJ3 354 aa11.18□□□□□ -0.62
U2AF1-212ENST00000496462 BAG6P46379 1132 aa11.18□□□□□ -0.62
U2AF1-212ENST00000496462 BARGINQ6ZT62 677 aa11.18□□□□□ -0.62
U2AF1-212ENST00000496462 SPATA31A5Q5VU36 1347 aa11.18□□□□□ -0.62
U2AF1-212ENST00000496462 SPATA31A7Q8IWB4 1347 aa11.18□□□□□ -0.62
U2AF1-212ENST00000496462 FBLN1P23142 703 aa11.18□□□□□ -0.62
U2AF1-212ENST00000496462 ARXQ96QS3 562 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms