RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 IRF5Q13568 498 aa12.27□□□□□ -0.45
SF3B1-212ENST00000496458 NBPF20Q3BBV1 942 aa12.27□□□□□ -0.45
SF3B1-212ENST00000496458 COG6Q9Y2V7 657 aa12.27□□□□□ -0.45
SF3B1-212ENST00000496458 WDR4P57081 412 aaKnown RBP12.26□□□□□ -0.45
SF3B1-212ENST00000496458 CAPN5O15484 640 aaPredicted RBP12.25□□□□□ -0.45
SF3B1-212ENST00000496458 UBTFP17480 764 aaKnown RBP12.25□□□□□ -0.45
SF3B1-212ENST00000496458 POM121Q96HA1 1249 aa12.25□□□□□ -0.45
SF3B1-212ENST00000496458 DACH1Q9UI36 760 aa12.25□□□□□ -0.45
SF3B1-212ENST00000496458 TIMP2P16035 220 aa12.24□□□□□ -0.45
SF3B1-212ENST00000496458 INTS6LQ5JSJ4 861 aaKnown RBP12.24□□□□□ -0.45
SF3B1-212ENST00000496458 CCDC116Q8IYX3 515 aa12.24□□□□□ -0.45
SF3B1-212ENST00000496458 ZNF330Q9Y3S2 320 aaPredicted RBP12.24□□□□□ -0.45
SF3B1-212ENST00000496458 RAB15P59190 212 aa12.23□□□□□ -0.45
SF3B1-212ENST00000496458 RAD21O60216 631 aa12.22□□□□□ -0.45
SF3B1-212ENST00000496458 ZIC2O95409 532 aaPredicted RBP12.22□□□□□ -0.45
SF3B1-212ENST00000496458 VAC14Q08AM6 782 aa12.22□□□□□ -0.45
SF3B1-212ENST00000496458 ITPKCQ96DU7 683 aa12.22□□□□□ -0.45
SF3B1-212ENST00000496458 KLF16Q9BXK1 252 aaPredicted RBP12.22□□□□□ -0.45
SF3B1-212ENST00000496458 ZFAND3Q9H8U3 227 aa12.22□□□□□ -0.45
SF3B1-212ENST00000496458 PPP1R26Q5T8A7 1209 aaPredicted RBP12.2□□□□□ -0.46
SF3B1-212ENST00000496458 EMILIN1Q9Y6C2 1016 aa12.2□□□□□ -0.46
SF3B1-212ENST00000496458 BMP1P13497 986 aa12.19□□□□□ -0.46
SF3B1-212ENST00000496458 ATP13A2Q9NQ11 1180 aa12.19□□□□□ -0.46
SF3B1-212ENST00000496458 ESPNB1AK53 854 aa12.18□□□□□ -0.46
SF3B1-212ENST00000496458 GIGYF1O75420 1035 aaPredicted RBP12.18□□□□□ -0.46
SF3B1-212ENST00000496458 DHX9Q08211 1270 aaKnown RBP12.18□□□□□ -0.46
SF3B1-212ENST00000496458 ZNF592Q92610 1267 aa12.18□□□□□ -0.46
SF3B1-212ENST00000496458 EIF4G2P78344 907 aaKnown RBP eCLIP12.17□□□□□ -0.46
SF3B1-212ENST00000496458 WASHC4Q2M389 1173 aa12.17□□□□□ -0.46
SF3B1-212ENST00000496458 MCCD1P59942 119 aaPredicted RBP12.16□□□□□ -0.46
SF3B1-212ENST00000496458 PGPEP1Q9NXJ5 209 aa12.16□□□□□ -0.46
SF3B1-212ENST00000496458 ERVH48-1M5A8F1 160 aa12.15□□□□□ -0.46
SF3B1-212ENST00000496458 WWC1Q8IX03 1113 aa12.15□□□□□ -0.46
SF3B1-212ENST00000496458 SEPT12Q8IYM1 358 aa12.15□□□□□ -0.46
SF3B1-212ENST00000496458 CLUAP1Q96AJ1 413 aa12.15□□□□□ -0.46
SF3B1-212ENST00000496458 TMPRSS4Q9NRS4 437 aa12.15□□□□□ -0.46
SF3B1-212ENST00000496458 GMPR2Q9P2T1 348 aaKnown RBP12.15□□□□□ -0.46
SF3B1-212ENST00000496458 POTECB2RU33 542 aa12.14□□□□□ -0.47
SF3B1-212ENST00000496458 TRIM46Q7Z4K8 759 aa12.14□□□□□ -0.47
SF3B1-212ENST00000496458 ZNF787Q6DD87 383 aa12.13□□□□□ -0.47
SF3B1-212ENST00000496458 ZNF784Q8NCA9 323 aaPredicted RBP12.12□□□□□ -0.47
SF3B1-212ENST00000496458 CBLBQ13191 982 aa12.11□□□□□ -0.47
SF3B1-212ENST00000496458 MRPL14Q6P1L8 145 aaKnown RBP12.11□□□□□ -0.47
SF3B1-212ENST00000496458 MEIOBQ8N635 442 aa12.11□□□□□ -0.47
SF3B1-212ENST00000496458 CEP126Q9P2H0 1117 aa12.11□□□□□ -0.47
SF3B1-212ENST00000496458 RNF20Q5VTR2 975 aa12.1□□□□□ -0.47
SF3B1-212ENST00000496458 SEMA3FQ13275 785 aa12.08□□□□□ -0.48
SF3B1-212ENST00000496458 SCARF1Q14162 830 aa12.08□□□□□ -0.48
SF3B1-212ENST00000496458 PURBQ96QR8 312 aaKnown RBP12.08□□□□□ -0.48
SF3B1-212ENST00000496458 SENP2Q9HC62 589 aa12.08□□□□□ -0.48
SF3B1-212ENST00000496458 CYLDQ9NQC7 956 aa12.08□□□□□ -0.48
SF3B1-212ENST00000496458 C11orf95C9JLR9 678 aaPredicted RBP12.07□□□□□ -0.48
SF3B1-212ENST00000496458 SOX11P35716 441 aa12.07□□□□□ -0.48
SF3B1-212ENST00000496458 C6orf118Q5T5N4 469 aa12.07□□□□□ -0.48
SF3B1-212ENST00000496458 PROSER2Q86WR7 435 aaPredicted RBP12.07□□□□□ -0.48
SF3B1-212ENST00000496458 LINC00528Q8N1L1 170 aa12.07□□□□□ -0.48
SF3B1-212ENST00000496458 ZFP42Q96MM3 310 aa12.07□□□□□ -0.48
SF3B1-212ENST00000496458 PCDHB11Q9Y5F2 797 aa12.07□□□□□ -0.48
SF3B1-212ENST00000496458 POM121CA8CG34 1229 aa12.06□□□□□ -0.48
SF3B1-212ENST00000496458 LILRA1O75019 489 aa12.06□□□□□ -0.48
SF3B1-212ENST00000496458 UPP2O95045 317 aa12.06□□□□□ -0.48
SF3B1-212ENST00000496458 Q6ZVU0 165 aa12.06□□□□□ -0.48
SF3B1-212ENST00000496458 TRIM47Q96LD4 638 aa12.06□□□□□ -0.48
SF3B1-212ENST00000496458 SLFNL1Q499Z3 407 aa12.05□□□□□ -0.48
SF3B1-212ENST00000496458 CCDC125Q86Z20 511 aa12.05□□□□□ -0.48
SF3B1-212ENST00000496458 GTF3C3Q9Y5Q9 886 aa12.05□□□□□ -0.48
SF3B1-212ENST00000496458 BMP2P12643 396 aa12.04□□□□□ -0.48
SF3B1-212ENST00000496458 RNF135Q8IUD6 432 aa12.04□□□□□ -0.48
SF3B1-212ENST00000496458 KIFC2Q96AC6 838 aa12.04□□□□□ -0.48
SF3B1-212ENST00000496458 AGBL1Q96MI9 1066 aa12.04□□□□□ -0.48
SF3B1-212ENST00000496458 CCDC85AQ96PX6 553 aaPredicted RBP12.04□□□□□ -0.48
SF3B1-212ENST00000496458 TSEN34Q9BSV6 310 aaKnown RBP12.04□□□□□ -0.48
SF3B1-212ENST00000496458 SNRPBP14678 240 aaKnown RBP12.03□□□□□ -0.48
SF3B1-212ENST00000496458 ADD1P35611 737 aaKnown RBP12.03□□□□□ -0.48
SF3B1-212ENST00000496458 RELBQ01201 579 aa12.02□□□□□ -0.49
SF3B1-212ENST00000496458 FNBP4Q8N3X1 1017 aaPredicted RBP12.02□□□□□ -0.49
SF3B1-212ENST00000496458 TRIM52Q96A61 297 aa12.02□□□□□ -0.49
SF3B1-212ENST00000496458 A6NJR5 290 aa12.01□□□□□ -0.49
SF3B1-212ENST00000496458 ADH1AP07327 375 aa12.01□□□□□ -0.49
SF3B1-212ENST00000496458 SCTRP47872 440 aa12.01□□□□□ -0.49
SF3B1-212ENST00000496458 ERVK-9P63128 1117 aa12.01□□□□□ -0.49
SF3B1-212ENST00000496458 CC2D2BQ6DHV5 1058 aa12.01□□□□□ -0.49
SF3B1-212ENST00000496458 PHTF2Q8N3S3 785 aa12.01□□□□□ -0.49
SF3B1-212ENST00000496458 ALG2Q9H553 416 aa12.01□□□□□ -0.49
SF3B1-212ENST00000496458 CDCA7Q9BWT1 371 aaPredicted RBP12□□□□□ -0.49
SF3B1-212ENST00000496458 TSGA10IPQ3SY00 556 aa11.99□□□□□ -0.49
SF3B1-212ENST00000496458 ADAMTS19Q8TE59 1207 aa11.99□□□□□ -0.49
SF3B1-212ENST00000496458 DOLKQ9UPQ8 538 aa11.99□□□□□ -0.49
SF3B1-212ENST00000496458 PIK3CDO00329 1044 aa11.98□□□□□ -0.49
SF3B1-212ENST00000496458 ESF1Q9H501 851 aaKnown RBP11.97□□□□□ -0.49
SF3B1-212ENST00000496458 ZNF395Q9H8N7 513 aaPredicted RBP11.97□□□□□ -0.49
SF3B1-212ENST00000496458 SPINT1O43278 529 aa11.96□□□□□ -0.49
SF3B1-212ENST00000496458 OXLD1Q5BKU9 147 aa11.96□□□□□ -0.49
SF3B1-212ENST00000496458 HDGFL1Q5TGJ6 251 aa11.96□□□□□ -0.49
SF3B1-212ENST00000496458 KDF1Q8NAX2 398 aaPredicted RBP11.96□□□□□ -0.49
SF3B1-212ENST00000496458 SOBPA7XYQ1 873 aa11.95□□□□□ -0.5
SF3B1-212ENST00000496458 ATP5J2-PTCD1G3V325 749 aa11.95□□□□□ -0.5
SF3B1-212ENST00000496458 PTGIRP43119 386 aa11.95□□□□□ -0.5
SF3B1-212ENST00000496458 PLPP7Q8NBV4 271 aa11.95□□□□□ -0.5
SF3B1-212ENST00000496458 MYCP01106 439 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms