RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 CAMSAP1Q5T5Y3 1602 aa12.4□□□□□ -0.42
RIF1-211ENST00000494333 THEMISQ8N1K5 641 aaPredicted RBP12.39□□□□□ -0.43
RIF1-211ENST00000494333 LRCH3Q96II8 777 aa12.39□□□□□ -0.43
RIF1-211ENST00000494333 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.39□□□□□ -0.43
RIF1-211ENST00000494333 SHANK2Q9UPX8 1470 aa12.39□□□□□ -0.43
RIF1-211ENST00000494333 FAM135AQ9P2D6 1515 aa12.38□□□□□ -0.43
RIF1-211ENST00000494333 FAM217BQ9NTX9 383 aaPredicted RBP12.38□□□□□ -0.43
RIF1-211ENST00000494333 A2ML1A8K2U0 1454 aa12.38□□□□□ -0.43
RIF1-211ENST00000494333 CEP170BQ9Y4F5 1589 aaPredicted RBP12.38□□□□□ -0.43
RIF1-211ENST00000494333 DDX11L8A8MPP1 907 aa12.37□□□□□ -0.43
RIF1-211ENST00000494333 SSTR3P32745 418 aaPredicted RBP12.37□□□□□ -0.43
RIF1-211ENST00000494333 BCAMP50895 628 aa12.37□□□□□ -0.43
RIF1-211ENST00000494333 KCTD12Q96CX2 325 aaKnown RBP12.37□□□□□ -0.43
RIF1-211ENST00000494333 ERBINQ96RT1 1412 aa12.37□□□□□ -0.43
RIF1-211ENST00000494333 PLA2R1Q13018 1463 aa12.36□□□□□ -0.43
RIF1-211ENST00000494333 SOWAHBA6NEL2 793 aa12.36□□□□□ -0.43
RIF1-211ENST00000494333 RNF40O75150 1001 aa12.36□□□□□ -0.43
RIF1-211ENST00000494333 ANKLE2Q86XL3 938 aa12.36□□□□□ -0.43
RIF1-211ENST00000494333 SLF2Q8IX21 1173 aa12.36□□□□□ -0.43
RIF1-211ENST00000494333 DNMT1P26358 1616 aaKnown RBP12.36□□□□□ -0.43
RIF1-211ENST00000494333 MYO3AQ8NEV4 1616 aa12.36□□□□□ -0.43
RIF1-211ENST00000494333 ABCC3O15438 1527 aa12.36□□□□□ -0.43
RIF1-211ENST00000494333 KANK1Q14678 1352 aa12.35□□□□□ -0.43
RIF1-211ENST00000494333 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.35□□□□□ -0.43
RIF1-211ENST00000494333 MS4A1P11836 297 aa12.35□□□□□ -0.43
RIF1-211ENST00000494333 SULF1Q8IWU6 871 aa12.35□□□□□ -0.43
RIF1-211ENST00000494333 RNF17Q9BXT8 1623 aaKnown RBP12.35□□□□□ -0.43
RIF1-211ENST00000494333 EIF2AK4Q9P2K8 1649 aaKnown RBP12.35□□□□□ -0.43
RIF1-211ENST00000494333 SLC10A3P09131 477 aa12.34□□□□□ -0.43
RIF1-211ENST00000494333 ITGAEP38570 1179 aa12.34□□□□□ -0.43
RIF1-211ENST00000494333 SLC4A3P48751 1232 aa12.34□□□□□ -0.43
RIF1-211ENST00000494333 ZNF335Q9H4Z2 1342 aaPredicted RBP12.34□□□□□ -0.43
RIF1-211ENST00000494333 NLRP1Q9C000 1473 aa12.34□□□□□ -0.43
RIF1-211ENST00000494333 THSD4Q6ZMP0 1018 aa12.33□□□□□ -0.44
RIF1-211ENST00000494333 MROH1Q8NDA8 1641 aa12.33□□□□□ -0.44
RIF1-211ENST00000494333 RDH13Q8NBN7 331 aa12.32□□□□□ -0.44
RIF1-211ENST00000494333 HPS5Q9UPZ3 1129 aa12.32□□□□□ -0.44
RIF1-211ENST00000494333 CROCC2H7BZ55 1655 aa12.32□□□□□ -0.44
RIF1-211ENST00000494333 ZNF142P52746 1687 aaPredicted RBP12.32□□□□□ -0.44
RIF1-211ENST00000494333 CD46P15529 392 aa12.31□□□□□ -0.44
RIF1-211ENST00000494333 ERVK-7P63135 1459 aa12.31□□□□□ -0.44
RIF1-211ENST00000494333 UGGT1Q9NYU2 1555 aa12.3□□□□□ -0.44
RIF1-211ENST00000494333 ARHGAP31Q2M1Z3 1444 aa12.3□□□□□ -0.44
RIF1-211ENST00000494333 ANKRD50Q9ULJ7 1429 aa12.3□□□□□ -0.44
RIF1-211ENST00000494333 ADGRL2O95490 1459 aa12.3□□□□□ -0.44
RIF1-211ENST00000494333 FAM117AQ9C073 453 aa12.3□□□□□ -0.44
RIF1-211ENST00000494333 TSR3Q9UJK0 312 aaKnown RBP12.3□□□□□ -0.44
RIF1-211ENST00000494333 SPATA31D1Q6ZQQ2 1576 aa12.3□□□□□ -0.44
RIF1-211ENST00000494333 ZC3H13Q5T200 1668 aaKnown RBP12.29□□□□□ -0.44
RIF1-211ENST00000494333 PRDM15P57071 1507 aaPredicted RBP12.29□□□□□ -0.44
RIF1-211ENST00000494333 LTBP4Q8N2S1 1624 aa12.29□□□□□ -0.44
RIF1-211ENST00000494333 PPP4CP60510 307 aa12.28□□□□□ -0.44
RIF1-211ENST00000494333 IDI1Q13907 227 aa12.28□□□□□ -0.44
RIF1-211ENST00000494333 RNF166Q96A37 237 aaPredicted RBP12.28□□□□□ -0.44
RIF1-211ENST00000494333 BEGAINQ9BUH8 593 aa12.28□□□□□ -0.44
RIF1-211ENST00000494333 TXNDC2Q86VQ3 553 aa12.27□□□□□ -0.45
RIF1-211ENST00000494333 WBP1LQ9NX94 342 aa12.27□□□□□ -0.45
RIF1-211ENST00000494333 CEP152O94986 1710 aa12.27□□□□□ -0.45
RIF1-211ENST00000494333 CFHP08603 1231 aa12.26□□□□□ -0.45
RIF1-211ENST00000494333 LTKP29376 864 aa12.25□□□□□ -0.45
RIF1-211ENST00000494333 GCGRP47871 477 aa12.25□□□□□ -0.45
RIF1-211ENST00000494333 PTPN5P54829 565 aa12.25□□□□□ -0.45
RIF1-211ENST00000494333 MMRN1Q13201 1228 aa12.25□□□□□ -0.45
RIF1-211ENST00000494333 NECTIN2Q92692 538 aa12.25□□□□□ -0.45
RIF1-211ENST00000494333 EID1Q9Y6B2 187 aa12.25□□□□□ -0.45
RIF1-211ENST00000494333 ROCK1Q13464 1354 aa12.25□□□□□ -0.45
RIF1-211ENST00000494333 NPHP4O75161 1426 aaPredicted RBP12.25□□□□□ -0.45
RIF1-211ENST00000494333 LMTK2Q8IWU2 1503 aa12.25□□□□□ -0.45
RIF1-211ENST00000494333 UBAP1LF5GYI3 381 aa12.24□□□□□ -0.45
RIF1-211ENST00000494333 DEPDC5O75140 1603 aa12.24□□□□□ -0.45
RIF1-211ENST00000494333 CFAP65Q6ZU64 1925 aaKnown RBP12.24□□□□□ -0.45
RIF1-211ENST00000494333 IL27Q8NEV9 243 aa12.24□□□□□ -0.45
RIF1-211ENST00000494333 DDRGK1Q96HY6 314 aa12.24□□□□□ -0.45
RIF1-211ENST00000494333 SLC52A1Q9NWF4 448 aa12.24□□□□□ -0.45
RIF1-211ENST00000494333 VWDEQ8N2E2 1590 aa12.23□□□□□ -0.45
RIF1-211ENST00000494333 MED14O60244 1454 aa12.23□□□□□ -0.45
RIF1-211ENST00000494333 PLEKHG3A1L390 1219 aa12.23□□□□□ -0.45
RIF1-211ENST00000494333 NEURL4Q96JN8 1562 aa12.22□□□□□ -0.45
RIF1-211ENST00000494333 IQSEC2Q5JU85 1478 aa12.21□□□□□ -0.45
RIF1-211ENST00000494333 NOS1P29475 1434 aa12.21□□□□□ -0.45
RIF1-211ENST00000494333 NUP155O75694 1391 aa12.21□□□□□ -0.45
RIF1-211ENST00000494333 APLP1P51693 650 aa12.21□□□□□ -0.45
RIF1-211ENST00000494333 TMEM2Q9UHN6 1383 aa12.2□□□□□ -0.46
RIF1-211ENST00000494333 KMT5BQ4FZB7 885 aa12.2□□□□□ -0.46
RIF1-211ENST00000494333 NUTM1Q86Y26 1132 aa12.2□□□□□ -0.46
RIF1-211ENST00000494333 SCAF11Q99590 1463 aaKnown RBP12.2□□□□□ -0.46
RIF1-211ENST00000494333 KDM4AO75164 1064 aa12.19□□□□□ -0.46
RIF1-211ENST00000494333 SPIRE2Q8WWL2 714 aa12.19□□□□□ -0.46
RIF1-211ENST00000494333 EFCAB6Q5THR3 1501 aa12.19□□□□□ -0.46
RIF1-211ENST00000494333 ARHGAP23Q9P227 1491 aa12.19□□□□□ -0.46
RIF1-211ENST00000494333 RRBP1Q9P2E9 1410 aaKnown RBP12.19□□□□□ -0.46
RIF1-211ENST00000494333 POLR1AO95602 1720 aaPredicted RBP12.18□□□□□ -0.46
RIF1-211ENST00000494333 UBR1Q8IWV7 1749 aa12.18□□□□□ -0.46
RIF1-211ENST00000494333 TOM1O60784 492 aa12.18□□□□□ -0.46
RIF1-211ENST00000494333 PRR14Q9BWN1 585 aa12.18□□□□□ -0.46
RIF1-211ENST00000494333 RPRD2Q5VT52 1461 aaKnown RBP12.18□□□□□ -0.46
RIF1-211ENST00000494333 SLIT1O75093 1534 aa12.17□□□□□ -0.46
RIF1-211ENST00000494333 ACTN4O43707 911 aaKnown RBP12.17□□□□□ -0.46
RIF1-211ENST00000494333 PIP4K2BP78356 416 aa12.17□□□□□ -0.46
RIF1-211ENST00000494333 TBC1D2Q9BYX2 928 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms