RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 AK7Q96M32 723 aa22.82■■□□□ 1.24
COL27A1-207ENST00000494090 CYP46A1Q9Y6A2 500 aa22.82■■□□□ 1.24
COL27A1-207ENST00000494090 AEBP1Q8IUX7 1158 aa22.82■■□□□ 1.24
COL27A1-207ENST00000494090 ZNF396Q96N95 335 aaPredicted RBP22.82■■□□□ 1.24
COL27A1-207ENST00000494090 RTEL1-TNFRSF6BF6WH68 1400 aa22.81■■□□□ 1.24
COL27A1-207ENST00000494090 DCAF8L1A6NGE4 600 aa22.81■■□□□ 1.24
COL27A1-207ENST00000494090 SNAPC4Q5SXM2 1469 aa22.81■■□□□ 1.24
COL27A1-207ENST00000494090 WDR33Q9C0J8 1336 aaKnown RBP22.81■■□□□ 1.24
COL27A1-207ENST00000494090 SAMD1Q6SPF0 538 aaPredicted RBP22.81■■□□□ 1.24
COL27A1-207ENST00000494090 RDXP35241 583 aaKnown RBP22.81■■□□□ 1.24
COL27A1-207ENST00000494090 CDK13Q14004 1512 aaKnown RBP22.81■■□□□ 1.24
COL27A1-207ENST00000494090 FIBPO43427 364 aa22.8■■□□□ 1.24
COL27A1-207ENST00000494090 ANKRD1Q15327 319 aa22.8■■□□□ 1.24
COL27A1-207ENST00000494090 CNNM1Q9NRU3 951 aa22.8■■□□□ 1.24
COL27A1-207ENST00000494090 MAP3K1Q13233 1512 aa22.8■■□□□ 1.24
COL27A1-207ENST00000494090 PCF11O94913 1555 aaKnown RBP22.79■■□□□ 1.24
COL27A1-207ENST00000494090 TTC39AQ5SRH9 613 aa22.79■■□□□ 1.24
COL27A1-207ENST00000494090 CABP4P57796 275 aa22.78■■□□□ 1.24
COL27A1-207ENST00000494090 RPAP2Q8IXW5 612 aaPredicted RBP22.78■■□□□ 1.24
COL27A1-207ENST00000494090 NSD3Q9BZ95 1437 aa22.78■■□□□ 1.24
COL27A1-207ENST00000494090 JMYQ8N9B5 988 aa22.78■■□□□ 1.24
COL27A1-207ENST00000494090 NACAP1Q9BZK3 213 aa22.78■■□□□ 1.24
COL27A1-207ENST00000494090 KIAA0586Q9BVV6 1533 aa22.77■■□□□ 1.24
COL27A1-207ENST00000494090 POGZQ7Z3K3 1410 aa22.77■■□□□ 1.24
COL27A1-207ENST00000494090 PDILTQ8N807 584 aa22.77■■□□□ 1.24
COL27A1-207ENST00000494090 HMGN5P82970 282 aaKnown RBP22.77■■□□□ 1.24
COL27A1-207ENST00000494090 CDK5RAP3Q96JB5 506 aa22.77■■□□□ 1.24
COL27A1-207ENST00000494090 GRPEL1Q9HAV7 217 aa22.77■■□□□ 1.24
COL27A1-207ENST00000494090 TMPOP42166 694 aaKnown RBP22.77■■□□□ 1.23
COL27A1-207ENST00000494090 DHX8Q14562 1220 aaKnown RBP22.76■■□□□ 1.23
COL27A1-207ENST00000494090 FILIP1LQ4L180 1135 aa22.76■■□□□ 1.23
COL27A1-207ENST00000494090 ZSCAN25Q6NSZ9 544 aa22.76■■□□□ 1.23
COL27A1-207ENST00000494090 MCM4P33991 863 aa22.76■■□□□ 1.23
COL27A1-207ENST00000494090 NFE2L2Q16236 605 aa22.76■■□□□ 1.23
COL27A1-207ENST00000494090 ZNF530Q6P9A1 599 aaPredicted RBP22.76■■□□□ 1.23
COL27A1-207ENST00000494090 KRI1Q8N9T8 703 aaKnown RBP22.76■■□□□ 1.23
COL27A1-207ENST00000494090 CCDC141Q6ZP82 1450 aa22.75■■□□□ 1.23
COL27A1-207ENST00000494090 PTPN23Q9H3S7 1636 aa22.75■■□□□ 1.23
COL27A1-207ENST00000494090 STRN4Q9NRL3 753 aa22.75■■□□□ 1.23
COL27A1-207ENST00000494090 CCP110O43303 1012 aa22.75■■□□□ 1.23
COL27A1-207ENST00000494090 CCDC192P0DO97 292 aa22.75■■□□□ 1.23
COL27A1-207ENST00000494090 MYO6Q9UM54 1294 aa22.75■■□□□ 1.23
COL27A1-207ENST00000494090 ANKLE2Q86XL3 938 aa22.74■■□□□ 1.23
COL27A1-207ENST00000494090 ABCA10Q8WWZ4 1543 aa22.74■■□□□ 1.23
COL27A1-207ENST00000494090 STK38Q15208 465 aa22.74■■□□□ 1.23
COL27A1-207ENST00000494090 HSP90B2PQ58FF3 399 aa22.74■■□□□ 1.23
COL27A1-207ENST00000494090 SMARCE1Q969G3 411 aa22.74■■□□□ 1.23
COL27A1-207ENST00000494090 SMC2O95347 1197 aa22.73■■□□□ 1.23
COL27A1-207ENST00000494090 C11orf95C9JLR9 678 aaPredicted RBP22.73■■□□□ 1.23
COL27A1-207ENST00000494090 WWC2Q6AWC2 1192 aa22.73■■□□□ 1.23
COL27A1-207ENST00000494090 TOM1L2Q6ZVM7 507 aa22.73■■□□□ 1.23
COL27A1-207ENST00000494090 TMEM57Q8N5G2 664 aa22.73■■□□□ 1.23
COL27A1-207ENST00000494090 MAGEC2Q9UBF1 373 aaPredicted RBP22.72■■□□□ 1.23
COL27A1-207ENST00000494090 FAM177BA6PVY3 158 aa22.72■■□□□ 1.23
COL27A1-207ENST00000494090 CCAR1Q8IX12 1150 aaKnown RBP22.72■■□□□ 1.23
COL27A1-207ENST00000494090 TRIM22Q8IYM9 498 aa22.72■■□□□ 1.23
COL27A1-207ENST00000494090 PHF23Q9BUL5 403 aaPredicted RBP22.72■■□□□ 1.23
COL27A1-207ENST00000494090 KRT85P78386 507 aa22.72■■□□□ 1.23
COL27A1-207ENST00000494090 ERCC4Q92889 916 aaPredicted RBP22.72■■□□□ 1.23
COL27A1-207ENST00000494090 CAMSAP2Q08AD1 1489 aa22.71■■□□□ 1.23
COL27A1-207ENST00000494090 ZSCAN31Q96LW9 406 aaPredicted RBP22.71■■□□□ 1.23
COL27A1-207ENST00000494090 MTMR7Q9Y216 660 aa22.71■■□□□ 1.23
COL27A1-207ENST00000494090 ABCC5O15440 1437 aa22.7■■□□□ 1.23
COL27A1-207ENST00000494090 SF3B2Q13435 895 aaKnown RBP22.7■■□□□ 1.22
COL27A1-207ENST00000494090 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.7■■□□□ 1.223e-13■■■■■ 105.8
COL27A1-207ENST00000494090 IQGAP2Q13576 1575 aa22.7■■□□□ 1.22
COL27A1-207ENST00000494090 IL27Q8NEV9 243 aa22.7■■□□□ 1.22
COL27A1-207ENST00000494090 NKTRP30414 1462 aaKnown RBP22.69■■□□□ 1.22
COL27A1-207ENST00000494090 RRP12Q5JTH9 1297 aaKnown RBP22.69■■□□□ 1.22
COL27A1-207ENST00000494090 TNMDQ9H2S6 317 aa22.69■■□□□ 1.22
COL27A1-207ENST00000494090 RARSP54136 660 aaKnown RBP22.68■■□□□ 1.22
COL27A1-207ENST00000494090 HSP90AB2PQ58FF8 381 aa22.68■■□□□ 1.22
COL27A1-207ENST00000494090 LARP1BQ659C4 914 aaKnown RBP22.68■■□□□ 1.22
COL27A1-207ENST00000494090 ZFYVE27Q5T4F4 411 aa22.68■■□□□ 1.22
COL27A1-207ENST00000494090 CC2D2AQ9P2K1 1620 aa22.68■■□□□ 1.22
COL27A1-207ENST00000494090 ABCC11Q96J66 1382 aa22.68■■□□□ 1.22
COL27A1-207ENST00000494090 SRGAP3O43295 1099 aa22.68■■□□□ 1.22
COL27A1-207ENST00000494090 RRS1Q15050 365 aaKnown RBP22.68■■□□□ 1.22
COL27A1-207ENST00000494090 CCDC57Q2TAC2 916 aa22.68■■□□□ 1.22
COL27A1-207ENST00000494090 NCOA1Q15788 1441 aa22.68■■□□□ 1.22
COL27A1-207ENST00000494090 MAGI1Q96QZ7 1491 aaPredicted RBP22.68■■□□□ 1.22
COL27A1-207ENST00000494090 ALDH1L2Q3SY69 923 aa22.68■■□□□ 1.22
COL27A1-207ENST00000494090 FMNL2Q96PY5 1086 aa22.67■■□□□ 1.22
COL27A1-207ENST00000494090 KRT18P05783 430 aaKnown RBP22.67■■□□□ 1.22
COL27A1-207ENST00000494090 CEBPZQ03701 1054 aaKnown RBP22.67■■□□□ 1.22
COL27A1-207ENST00000494090 MPHOSPH8Q99549 860 aa22.67■■□□□ 1.22
COL27A1-207ENST00000494090 MAP4K4O95819 1239 aaPredicted RBP22.67■■□□□ 1.22
COL27A1-207ENST00000494090 CAGE1Q8TC20 777 aa22.67■■□□□ 1.22
COL27A1-207ENST00000494090 PDIA4P13667 645 aaKnown RBP22.67■■□□□ 1.22
COL27A1-207ENST00000494090 KDM4AO75164 1064 aa22.67■■□□□ 1.22
COL27A1-207ENST00000494090 SIL1Q9H173 461 aa22.67■■□□□ 1.22
COL27A1-207ENST00000494090 PDRG1Q9NUG6 133 aa22.67■■□□□ 1.22
COL27A1-207ENST00000494090 BLOC1S2Q6QNY1 142 aa22.66■■□□□ 1.22
COL27A1-207ENST00000494090 DACH1Q9UI36 760 aa22.66■■□□□ 1.22
COL27A1-207ENST00000494090 CUL7Q14999 1698 aa22.66■■□□□ 1.22
COL27A1-207ENST00000494090 STK3Q13188 491 aa22.66■■□□□ 1.22
COL27A1-207ENST00000494090 ARHGEF11O15085 1522 aa22.66■■□□□ 1.22
COL27A1-207ENST00000494090 ATP2B1P20020 1258 aa22.66■■□□□ 1.22
COL27A1-207ENST00000494090 AACSQ86V21 672 aa22.66■■□□□ 1.22
COL27A1-207ENST00000494090 SPC24Q8NBT2 197 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms