RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 OS9Q13438 667 aaPredicted RBP8.49□□□□□ -1.05
VPS13B-205ENST00000493587 U2AF2P26368 475 aaKnown RBP eCLIP8.49□□□□□ -1.05
VPS13B-205ENST00000493587 CENPQQ7L2Z9 268 aaPredicted RBP8.49□□□□□ -1.05
VPS13B-205ENST00000493587 NPC1L1Q9UHC9 1359 aa8.49□□□□□ -1.05
VPS13B-205ENST00000493587 CDC42BPGQ6DT37 1551 aa8.48□□□□□ -1.05
VPS13B-205ENST00000493587 PTPRMP28827 1452 aa8.48□□□□□ -1.05
VPS13B-205ENST00000493587 GOLGA6L22H0YM25 854 aa8.48□□□□□ -1.05
VPS13B-205ENST00000493587 PSEN1P49768 467 aa8.48□□□□□ -1.05
VPS13B-205ENST00000493587 GBP4Q96PP9 640 aa8.48□□□□□ -1.05
VPS13B-205ENST00000493587 TOMM22Q9NS69 142 aa8.48□□□□□ -1.05
VPS13B-205ENST00000493587 NLRP1Q9C000 1473 aa8.47□□□□□ -1.05
VPS13B-205ENST00000493587 MMP14P50281 582 aa8.47□□□□□ -1.05
VPS13B-205ENST00000493587 HMGN5P82970 282 aaKnown RBP8.47□□□□□ -1.05
VPS13B-205ENST00000493587 DLC1Q96QB1 1528 aa8.47□□□□□ -1.05
VPS13B-205ENST00000493587 SPAG9O60271 1321 aaKnown RBP8.47□□□□□ -1.05
VPS13B-205ENST00000493587 C3P01024 1663 aa8.47□□□□□ -1.05
VPS13B-205ENST00000493587 GEMIN8Q9NWZ8 242 aaKnown RBP8.46□□□□□ -1.05
VPS13B-205ENST00000493587 IQSEC2Q5JU85 1478 aa8.46□□□□□ -1.05
VPS13B-205ENST00000493587 CD163L1Q9NR16 1453 aa8.46□□□□□ -1.05
VPS13B-205ENST00000493587 SLC20A2Q08357 652 aa8.46□□□□□ -1.05
VPS13B-205ENST00000493587 CHAF1AQ13111 956 aaPredicted RBP8.46□□□□□ -1.06
VPS13B-205ENST00000493587 TBC1D2Q9BYX2 928 aa8.46□□□□□ -1.06
VPS13B-205ENST00000493587 NOL7Q9UMY1 257 aaKnown RBP8.46□□□□□ -1.06
VPS13B-205ENST00000493587 ZNF500O60304 480 aaPredicted RBP8.45□□□□□ -1.06
VPS13B-205ENST00000493587 MYRIPQ8NFW9 859 aa8.45□□□□□ -1.06
VPS13B-205ENST00000493587 ZNF592Q92610 1267 aa8.45□□□□□ -1.06
VPS13B-205ENST00000493587 ZKSCAN5Q9Y2L8 839 aa8.45□□□□□ -1.06
VPS13B-205ENST00000493587 YEATS2Q9ULM3 1422 aa8.45□□□□□ -1.06
VPS13B-205ENST00000493587 KIAA2012Q0VF49 1180 aa8.45□□□□□ -1.06
VPS13B-205ENST00000493587 SKOR2Q2VWA4 1001 aaPredicted RBP8.45□□□□□ -1.06
VPS13B-205ENST00000493587 MPNDQ8N594 471 aa8.45□□□□□ -1.06
VPS13B-205ENST00000493587 PPP1R9BQ96SB3 815 aa8.45□□□□□ -1.06
VPS13B-205ENST00000493587 RSPH14Q9UHP6 348 aa8.45□□□□□ -1.06
VPS13B-205ENST00000493587 DDX49Q9Y6V7 483 aaKnown RBP8.45□□□□□ -1.06
VPS13B-205ENST00000493587 RGPD1P0DJD0 1748 aa8.44□□□□□ -1.06
VPS13B-205ENST00000493587 ZNF142P52746 1687 aaPredicted RBP8.44□□□□□ -1.06
VPS13B-205ENST00000493587 TICAM2Q86XR7 235 aa8.44□□□□□ -1.06
VPS13B-205ENST00000493587 MYCBPQ99417 103 aaPredicted RBP8.44□□□□□ -1.06
VPS13B-205ENST00000493587 CPS1P31327 1500 aa8.44□□□□□ -1.06
VPS13B-205ENST00000493587 GOLIM4O00461 696 aa8.44□□□□□ -1.06
VPS13B-205ENST00000493587 PHF14O94880 888 aa8.44□□□□□ -1.06
VPS13B-205ENST00000493587 RBM25P49756 843 aaKnown RBP8.44□□□□□ -1.06
VPS13B-205ENST00000493587 HSCBQ8IWL3 235 aa8.44□□□□□ -1.06
VPS13B-205ENST00000493587 ANTXR1Q9H6X2 564 aa8.44□□□□□ -1.06
VPS13B-205ENST00000493587 COL3A1P02461 1466 aaPredicted RBP8.44□□□□□ -1.06
VPS13B-205ENST00000493587 ALKQ9UM73 1620 aa8.43□□□□□ -1.06
VPS13B-205ENST00000493587 C20orf194Q5TEA3 1177 aa8.43□□□□□ -1.06
VPS13B-205ENST00000493587 YY1AP1Q9H869 796 aa8.43□□□□□ -1.06
VPS13B-205ENST00000493587 CCDC39Q9UFE4 941 aa8.43□□□□□ -1.06
VPS13B-205ENST00000493587 TRHP20396 242 aaPredicted RBP8.43□□□□□ -1.06
VPS13B-205ENST00000493587 BRD4O60885 1362 aaPredicted RBP8.42□□□□□ -1.06
VPS13B-205ENST00000493587 CAPN2P17655 700 aa8.42□□□□□ -1.06
VPS13B-205ENST00000493587 GABPB1Q06547 395 aaPredicted RBP8.42□□□□□ -1.06
VPS13B-205ENST00000493587 ZNF710Q8N1W2 664 aa8.42□□□□□ -1.06
VPS13B-205ENST00000493587 GOLGA6L6A8MZA4 724 aa8.42□□□□□ -1.06
VPS13B-205ENST00000493587 GRIPAP1Q4V328 841 aa8.42□□□□□ -1.06
VPS13B-205ENST00000493587 EFCC1Q9HA90 598 aa8.42□□□□□ -1.06
VPS13B-205ENST00000493587 HS1BP3Q53T59 392 aa8.41□□□□□ -1.06
VPS13B-205ENST00000493587 PRIMPOLQ96LW4 560 aa8.41□□□□□ -1.06
VPS13B-205ENST00000493587 BCL2L12Q9HB09 334 aa8.41□□□□□ -1.06
VPS13B-205ENST00000493587 FOXD4L1Q9NU39 408 aa8.41□□□□□ -1.06
VPS13B-205ENST00000493587 FBXO3Q9UK99 471 aa8.41□□□□□ -1.06
VPS13B-205ENST00000493587 XRN1Q8IZH2 1706 aaKnown RBP8.41□□□□□ -1.06
VPS13B-205ENST00000493587 SEC24BO95487 1268 aa8.41□□□□□ -1.06
VPS13B-205ENST00000493587 SRPK2P78362 688 aaKnown RBP8.41□□□□□ -1.06
VPS13B-205ENST00000493587 CYB5RLQ6IPT4 315 aa8.41□□□□□ -1.06
VPS13B-205ENST00000493587 HSP90AB1P08238 724 aaKnown RBP8.41□□□□□ -1.06
VPS13B-205ENST00000493587 SMC4Q9NTJ3 1288 aa8.41□□□□□ -1.06
VPS13B-205ENST00000493587 OGFRQ9NZT2 677 aa8.41□□□□□ -1.06
VPS13B-205ENST00000493587 N4BP2Q86UW6 1770 aaPredicted RBP8.4□□□□□ -1.06
VPS13B-205ENST00000493587 DLG5Q8TDM6 1919 aa8.4□□□□□ -1.06
VPS13B-205ENST00000493587 PNISRQ8TF01 805 aaKnown RBP8.4□□□□□ -1.06
VPS13B-205ENST00000493587 MED14O60244 1454 aa8.4□□□□□ -1.06
VPS13B-205ENST00000493587 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.4□□□□□ -1.06
VPS13B-205ENST00000493587 MCM5P33992 734 aa8.4□□□□□ -1.06
VPS13B-205ENST00000493587 CARD10Q9BWT7 1032 aa8.4□□□□□ -1.06
VPS13B-205ENST00000493587 MCCP23508 829 aa8.39□□□□□ -1.07
VPS13B-205ENST00000493587 TDO2P48775 406 aa8.39□□□□□ -1.07
VPS13B-205ENST00000493587 FEZ1Q99689 392 aa8.39□□□□□ -1.07
VPS13B-205ENST00000493587 ZBTB12Q9Y330 459 aaPredicted RBP8.39□□□□□ -1.07
VPS13B-205ENST00000493587 FMN2Q9NZ56 1722 aa8.39□□□□□ -1.07
VPS13B-205ENST00000493587 CEP83Q9Y592 693 aa8.39□□□□□ -1.07
VPS13B-205ENST00000493587 ITSN1Q15811 1721 aa8.39□□□□□ -1.07
VPS13B-205ENST00000493587 RAPGEF3O95398 923 aa8.39□□□□□ -1.07
VPS13B-205ENST00000493587 RASSF4Q9H2L5 321 aa8.39□□□□□ -1.07
VPS13B-205ENST00000493587 TAOK2Q9UL54 1235 aa8.39□□□□□ -1.07
VPS13B-205ENST00000493587 HSP90AB3PQ58FF7 597 aa8.38□□□□□ -1.07
VPS13B-205ENST00000493587 EGFL6Q8IUX8 553 aa8.38□□□□□ -1.07
VPS13B-205ENST00000493587 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.38□□□□□ -1.07
VPS13B-205ENST00000493587 FEZ2Q9UHY8 353 aaPredicted RBP8.38□□□□□ -1.07
VPS13B-205ENST00000493587 ZNF521Q96K83 1311 aa8.38□□□□□ -1.07
VPS13B-205ENST00000493587 TPRNQ4KMQ1 711 aa8.38□□□□□ -1.07
VPS13B-205ENST00000493587 CAVIN1Q6NZI2 390 aaKnown RBP8.38□□□□□ -1.07
VPS13B-205ENST00000493587 RNF214Q8ND24 703 aa8.38□□□□□ -1.07
VPS13B-205ENST00000493587 CDCA7LQ96GN5 454 aa8.38□□□□□ -1.07
VPS13B-205ENST00000493587 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS13B-205ENST00000493587 CLSTN1O94985 981 aa8.38□□□□□ -1.07
VPS13B-205ENST00000493587 NPM1P06748 294 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS13B-205ENST00000493587 CT47A1Q5JQC4 288 aaPredicted RBP8.38□□□□□ -1.07
VPS13B-205ENST00000493587 C10orf67Q8IYJ2 551 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms