RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 LDHAL6AQ6ZMR3 332 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 MAP3K1Q13233 1512 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 A0A0U1RQG5 324 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-207ENST00000493303 CA8P35219 290 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 BICDL1Q6ZP65 573 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 GAS2L1Q99501 681 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-207ENST00000493303 SEPT3Q9UH03 358 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 PAK3O75914 559 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-207ENST00000493303 EIF6P56537 245 aaKnown RBP4.41□□□□□ -1.7
CSMD3-207ENST00000493303 KIAA2012Q0VF49 1180 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 TRAPPC3LQ5T215 181 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 FBXW10Q5XX13 1052 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 UNC13BO14795 1591 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 RUFY4Q6ZNE9 571 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 APBB1IPQ7Z5R6 666 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-207ENST00000493303 IGFLR1Q9H665 355 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 USP47Q96K76 1375 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 IQGAP3Q86VI3 1631 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 DPYDQ12882 1025 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 TNPO1Q92973 898 aaKnown RBP4.41□□□□□ -1.7
CSMD3-207ENST00000493303 IL1RAPL2Q9NP60 686 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 PKD2Q13563 968 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 ERICH6Q7L0X2 663 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 SHCBP1Q8NEM2 672 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 FAM122AQ96E09 287 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 IGF1RP08069 1367 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 AHDC1Q5TGY3 1603 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-207ENST00000493303 COL16A1Q07092 1604 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-207ENST00000493303 BPIFB4P59827 614 aa4.41□□□□□ -1.7
CSMD3-207ENST00000493303 LRRFIP1Q32MZ4 808 aaKnown RBP4.41□□□□□ -1.7
CSMD3-207ENST00000493303 U3KPZ7 1027 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-207ENST00000493303 XRN1Q8IZH2 1706 aaKnown RBP4.4□□□□□ -1.7
CSMD3-207ENST00000493303 ABCA3Q99758 1704 aa4.4□□□□□ -1.7
CSMD3-207ENST00000493303 ZW10O43264 779 aa4.4□□□□□ -1.7
CSMD3-207ENST00000493303 FLIIQ13045 1269 aa4.4□□□□□ -1.7
CSMD3-207ENST00000493303 CCDC82Q8N4S0 544 aa4.4□□□□□ -1.7
CSMD3-207ENST00000493303 JDP2Q8WYK2 163 aa4.4□□□□□ -1.7
CSMD3-207ENST00000493303 CEP89Q96ST8 783 aa4.4□□□□□ -1.7
CSMD3-207ENST00000493303 CAPN9O14815 690 aa4.4□□□□□ -1.7
CSMD3-207ENST00000493303 TMEM132AQ24JP5 1023 aa4.4□□□□□ -1.7
CSMD3-207ENST00000493303 REM2Q8IYK8 340 aaPredicted RBP4.4□□□□□ -1.7
CSMD3-207ENST00000493303 KIF28PB7ZC32 967 aa4.4□□□□□ -1.71
CSMD3-207ENST00000493303 DDX46Q7L014 1031 aaKnown RBP4.4□□□□□ -1.71
CSMD3-207ENST00000493303 CCDC34Q96HJ3 373 aa4.4□□□□□ -1.71
CSMD3-207ENST00000493303 DNAJC2Q99543 621 aaKnown RBP4.4□□□□□ -1.71
CSMD3-207ENST00000493303 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.4□□□□□ -1.71
CSMD3-207ENST00000493303 CCDC87Q9NVE4 849 aa4.4□□□□□ -1.71
CSMD3-207ENST00000493303 C16orf72Q14CZ0 275 aa4.4□□□□□ -1.71
CSMD3-207ENST00000493303 KIF1AQ12756 1690 aa4.4□□□□□ -1.71
CSMD3-207ENST00000493303 MSH6P52701 1360 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 CCNB3Q8WWL7 1395 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 SYCE3A1L190 88 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 PRRX2Q99811 253 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 SPON1Q9HCB6 807 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 HOMER2Q9NSB8 354 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.39□□□□□ -1.71
CSMD3-207ENST00000493303 PDZRN3Q9UPQ7 1066 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 USTQ9Y2C2 406 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 SPDYE3A6NKU9 549 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 HSP90AA2PQ14568 343 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-207ENST00000493303 KMT5BQ4FZB7 885 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 CHMP4CQ96CF2 233 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 ZNF287Q9HBT7 754 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 CPS1P31327 1500 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 LMTK2Q8IWU2 1503 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 PTPRKQ15262 1439 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 PRC1O43663 620 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 KRT38O76015 456 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 RBM26Q5T8P6 1007 aaKnown RBP4.39□□□□□ -1.71
CSMD3-207ENST00000493303 EFCAB2Q5VUJ9 269 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 JPH4Q96JJ6 628 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 UACAQ9BZF9 1416 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 PABPC4Q13310 644 aaKnown RBP eCLIP4.39□□□□□ -1.71
CSMD3-207ENST00000493303 RASEFQ8IZ41 740 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 VSIG10Q8N0Z9 540 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 PLCD3Q8N3E9 789 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 SSH3Q8TE77 659 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 LRRC46Q96FV0 321 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 UPF3BQ9BZI7 483 aaKnown RBP4.39□□□□□ -1.71
CSMD3-207ENST00000493303 PARP3Q9Y6F1 533 aa4.39□□□□□ -1.71
CSMD3-207ENST00000493303 TSPY2A6NKD2 308 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 TSPY3P0CV98 308 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 TSPY8P0CW00 308 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 VPS53Q5VIR6 699 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 TCP11L1Q9NUJ3 509 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 MARCH6O60337 910 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 EP400NLQ6ZTU2 488 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 HDGFL2Q7Z4V5 671 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-207ENST00000493303 ZNF652Q9Y2D9 606 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 LAMB1P07942 1786 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 SFSWAPQ12872 951 aaKnown RBP4.38□□□□□ -1.71
CSMD3-207ENST00000493303 CCDC77Q9BR77 488 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 NUP153P49790 1475 aaKnown RBP4.38□□□□□ -1.71
CSMD3-207ENST00000493303 CBX1P83916 185 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 PDE3AQ14432 1141 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 ZRSR1Q15695 479 aaKnown RBP4.38□□□□□ -1.71
CSMD3-207ENST00000493303 AK7Q96M32 723 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 NUDCQ9Y266 331 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 NRXN3Q9Y4C0 1643 aa4.38□□□□□ -1.71
CSMD3-207ENST00000493303 ST5P78524 1137 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms