RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 OVOS2A0A0J9YW53 1432 aa34.52■■■■□ 3.12
UPF3A-209ENST00000492270 OVOS2Q6IE36 1432 aa34.52■■■■□ 3.12
UPF3A-209ENST00000492270 WNK3Q9BYP7 1800 aa34.51■■■■□ 3.11
UPF3A-209ENST00000492270 AXIN2Q9Y2T1 843 aa34.5■■■■□ 3.11
UPF3A-209ENST00000492270 KIF20BQ96Q89 1820 aa34.48■■■■□ 3.11
UPF3A-209ENST00000492270 CDCA8Q53HL2 280 aa34.48■■■■□ 3.11
UPF3A-209ENST00000492270 CRB1P82279 1406 aa34.47■■■■□ 3.11
UPF3A-209ENST00000492270 ABCC6O95255 1503 aa34.46■■■■□ 3.11
UPF3A-209ENST00000492270 PARP4Q9UKK3 1724 aaKnown RBP34.45■■■■□ 3.11
UPF3A-209ENST00000492270 HSPA5P11021 654 aaKnown RBP34.44■■■■□ 3.1
UPF3A-209ENST00000492270 EIF4G2P78344 907 aaKnown RBP eCLIP34.43■■■■□ 3.1
UPF3A-209ENST00000492270 FAM182BQ5T319 152 aa34.43■■■■□ 3.1
UPF3A-209ENST00000492270 BARGINQ6ZT62 677 aa34.43■■■■□ 3.1
UPF3A-209ENST00000492270 TCP11L2Q8N4U5 519 aa34.43■■■■□ 3.1
UPF3A-209ENST00000492270 BLMP54132 1417 aaPredicted RBP34.4■■■■□ 3.1
UPF3A-209ENST00000492270 WDR17Q8IZU2 1322 aa34.4■■■■□ 3.1
UPF3A-209ENST00000492270 LRRC37A3O60309 1634 aa34.38■■■■□ 3.09
UPF3A-209ENST00000492270 TOM1L2Q6ZVM7 507 aa34.38■■■■□ 3.09
UPF3A-209ENST00000492270 CCDC125Q86Z20 511 aa34.37■■■■□ 3.09
UPF3A-209ENST00000492270 THRAP3Q9Y2W1 955 aaKnown RBP34.37■■■■□ 3.09
UPF3A-209ENST00000492270 RGPD1P0DJD0 1748 aa34.37■■■■□ 3.09
UPF3A-209ENST00000492270 COG3Q96JB2 828 aa34.35■■■■□ 3.09
UPF3A-209ENST00000492270 TNS1Q9HBL0 1735 aaKnown RBP34.34■■■■□ 3.09
UPF3A-209ENST00000492270 POLR3GLQ9BT43 218 aa34.33■■■■□ 3.09
UPF3A-209ENST00000492270 CSB-PGBD3P0DP91 1061 aa34.32■■■■□ 3.08
UPF3A-209ENST00000492270 GGNBP2Q9H3C7 697 aa34.32■■■■□ 3.08
UPF3A-209ENST00000492270 NSD3Q9BZ95 1437 aa34.31■■■■□ 3.08
UPF3A-209ENST00000492270 FYB1O15117 783 aa34.31■■■■□ 3.08
UPF3A-209ENST00000492270 CARD14Q9BXL6 1004 aa34.31■■■■□ 3.08
UPF3A-209ENST00000492270 FBLN1P23142 703 aa34.3■■■■□ 3.08
UPF3A-209ENST00000492270 ERBB3P21860 1342 aa34.28■■■■□ 3.08
UPF3A-209ENST00000492270 DEFB132Q7Z7B7 95 aa34.27■■■■□ 3.08
UPF3A-209ENST00000492270 PDE3BQ13370 1112 aa34.26■■■■□ 3.08
UPF3A-209ENST00000492270 CARD10Q9BWT7 1032 aa34.26■■■■□ 3.08
UPF3A-209ENST00000492270 RGPD2P0DJD1 1756 aa34.26■■■■□ 3.07
UPF3A-209ENST00000492270 FAM208AQ9UK61 1670 aaKnown RBP34.25■■■■□ 3.07
UPF3A-209ENST00000492270 PEAK1Q9H792 1746 aa34.25■■■■□ 3.07
UPF3A-209ENST00000492270 SF3B2Q13435 895 aaKnown RBP34.25■■■■□ 3.07
UPF3A-209ENST00000492270 MAP3K19Q56UN5 1328 aa34.25■■■■□ 3.07
UPF3A-209ENST00000492270 DISP2A7MBM2 1401 aa34.23■■■■□ 3.07
UPF3A-209ENST00000492270 ANKRD24Q8TF21 1146 aa34.23■■■■□ 3.07
UPF3A-209ENST00000492270 C11orf95C9JLR9 678 aaPredicted RBP34.22■■■■□ 3.07
UPF3A-209ENST00000492270 SBF2Q86WG5 1849 aa34.22■■■■□ 3.07
UPF3A-209ENST00000492270 ANKRD26Q9UPS8 1709 aa34.21■■■■□ 3.07
UPF3A-209ENST00000492270 IP6K1Q92551 441 aa34.21■■■■□ 3.07
UPF3A-209ENST00000492270 CCDC7Q96M83 1385 aa34.21■■■■□ 3.07
UPF3A-209ENST00000492270 FAM196AQ6ZSG2 479 aa34.2■■■■□ 3.07
UPF3A-209ENST00000492270 RRS1Q15050 365 aaKnown RBP34.18■■■■□ 3.06
UPF3A-209ENST00000492270 DDB1Q16531 1140 aa34.18■■■■□ 3.06
UPF3A-209ENST00000492270 NLRP2Q9NX02 1062 aa34.18■■■■□ 3.06
UPF3A-209ENST00000492270 HOXC9P31274 260 aa34.16■■■■□ 3.06
UPF3A-209ENST00000492270 LTV1Q96GA3 475 aaPredicted RBP34.16■■■■□ 3.06
UPF3A-209ENST00000492270 TRIM37O94972 964 aa34.15■■■■□ 3.06
UPF3A-209ENST00000492270 AMPHP49418 695 aa34.15■■■■□ 3.06
UPF3A-209ENST00000492270 MAP2P11137 1827 aaKnown RBP34.14■■■■□ 3.06
UPF3A-209ENST00000492270 CDCA7Q9BWT1 371 aaPredicted RBP34.14■■■■□ 3.06
UPF3A-209ENST00000492270 OVOS2A0A0G2JMS6 1433 aa34.13■■■■□ 3.05
UPF3A-209ENST00000492270 RTL1A6NKG5 1358 aa34.13■■■■□ 3.05
UPF3A-209ENST00000492270 BAG6P46379 1132 aa34.13■■■■□ 3.05
UPF3A-209ENST00000492270 CGNL1Q0VF96 1302 aa34.1■■■■□ 3.05
UPF3A-209ENST00000492270 TNS2Q63HR2 1409 aa34.1■■■■□ 3.05
UPF3A-209ENST00000492270 EN1Q05925 392 aaPredicted RBP34.09■■■■□ 3.05
UPF3A-209ENST00000492270 PANK3Q9H999 370 aa34.09■■■■□ 3.05
UPF3A-209ENST00000492270 MARCH10Q8NA82 808 aaPredicted RBP34.08■■■■□ 3.05
UPF3A-209ENST00000492270 KIF7Q2M1P5 1343 aa34.05■■■■□ 3.04
UPF3A-209ENST00000492270 IL2RBP14784 551 aa34.05■■■■□ 3.04
UPF3A-209ENST00000492270 RREB1Q92766 1687 aa34.04■■■■□ 3.04
UPF3A-209ENST00000492270 EXOC5O00471 708 aa34.04■■■■□ 3.04
UPF3A-209ENST00000492270 EMILIN1Q9Y6C2 1016 aa34.03■■■■□ 3.04
UPF3A-209ENST00000492270 FLT4P35916 1363 aa34.02■■■■□ 3.04
UPF3A-209ENST00000492270 APBA3O96018 575 aa34.02■■■■□ 3.04
UPF3A-209ENST00000492270 HSP90AB2PQ58FF8 381 aa34.01■■■■□ 3.03
UPF3A-209ENST00000492270 SHANK3Q9BYB0 1731 aa34.01■■■■□ 3.03
UPF3A-209ENST00000492270 EZH2Q15910 746 aaKnown RBP34■■■■□ 3.03
UPF3A-209ENST00000492270 INSRP06213 1382 aa33.99■■■■□ 3.03
UPF3A-209ENST00000492270 NUP188Q5SRE5 1749 aa33.99■■■■□ 3.03
UPF3A-209ENST00000492270 KIF24Q5T7B8 1368 aa33.98■■■■□ 3.03
UPF3A-209ENST00000492270 BCL9O00512 1426 aa33.97■■■■□ 3.03
UPF3A-209ENST00000492270 SMG6Q86US8 1419 aaKnown RBP33.97■■■■□ 3.03
UPF3A-209ENST00000492270 PTF1AQ7RTS3 328 aa33.97■■■■□ 3.03
UPF3A-209ENST00000492270 CAMKK2Q96RR4 588 aa33.97■■■■□ 3.03
UPF3A-209ENST00000492270 RGPD3A6NKT7 1758 aaPredicted RBP33.96■■■■□ 3.03
UPF3A-209ENST00000492270 RGPD4Q7Z3J3 1758 aa33.96■■■■□ 3.03
UPF3A-209ENST00000492270 NHSQ6T4R5 1651 aa33.96■■■■□ 3.03
UPF3A-209ENST00000492270 MEGF6O75095 1541 aa33.95■■■■□ 3.03
UPF3A-209ENST00000492270 NBPF6Q5VWK0 638 aa33.95■■■■□ 3.03
UPF3A-209ENST00000492270 NBPF4Q96M43 638 aa33.95■■■■□ 3.03
UPF3A-209ENST00000492270 USHBP1Q8N6Y0 703 aa33.94■■■■□ 3.02
UPF3A-209ENST00000492270 KAT6BQ8WYB5 2073 aa33.94■■■■□ 3.02
UPF3A-209ENST00000492270 PPM1GO15355 546 aaPredicted RBP33.93■■■■□ 3.02
UPF3A-209ENST00000492270 TNNT2P45379 298 aaPredicted RBP33.93■■■■□ 3.02
UPF3A-209ENST00000492270 NSD2O96028 1365 aa33.91■■■■□ 3.02
UPF3A-209ENST00000492270 POLKQ9UBT6 870 aa33.9■■■■□ 3.02
UPF3A-209ENST00000492270 PARD3Q8TEW0 1356 aa33.89■■■■□ 3.02
UPF3A-209ENST00000492270 BCL11BQ9C0K0 894 aaPredicted RBP33.88■■■■□ 3.01
UPF3A-209ENST00000492270 BTAF1O14981 1849 aa33.87■■■■□ 3.01
UPF3A-209ENST00000492270 KNSTRNQ9Y448 316 aa33.86■■■■□ 3.01
UPF3A-209ENST00000492270 DOT1LQ8TEK3 1739 aa33.86■■■■□ 3.01
UPF3A-209ENST00000492270 WASHC2AQ641Q2 1341 aa33.85■■■■□ 3.01
UPF3A-209ENST00000492270 PSDA5PKW4 1024 aaPredicted RBP33.85■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms