RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 HSP90AA2PQ14568 343 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-212ENST00000491769 ZNF644Q9H582 1327 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-212ENST00000491769 BTBD11A6QL63 1104 aa15.58■□□□□ 0.08
COL6A3-212ENST00000491769 ERLIN2O94905 339 aa15.57■□□□□ 0.08
COL6A3-212ENST00000491769 CALRP27797 417 aaKnown RBP15.57■□□□□ 0.08
COL6A3-212ENST00000491769 ANKIB1Q9P2G1 1089 aa15.57■□□□□ 0.08
COL6A3-212ENST00000491769 CFAP70Q5T0N1 1121 aa15.57■□□□□ 0.08
COL6A3-212ENST00000491769 NOL7Q9UMY1 257 aaKnown RBP15.57■□□□□ 0.08
COL6A3-212ENST00000491769 BMP2KQ9NSY1 1161 aaPredicted RBP15.57■□□□□ 0.08
COL6A3-212ENST00000491769 ABCF2Q9UG63 623 aa15.57■□□□□ 0.08
COL6A3-212ENST00000491769 TRIM5Q9C035 493 aa15.57■□□□□ 0.08
COL6A3-212ENST00000491769 CCDC191Q8NCU4 936 aa15.56■□□□□ 0.08
COL6A3-212ENST00000491769 STARD3NLO95772 234 aa15.56■□□□□ 0.08
COL6A3-212ENST00000491769 TNIP1Q15025 636 aa15.56■□□□□ 0.08
COL6A3-212ENST00000491769 ZNF652Q9Y2D9 606 aa15.56■□□□□ 0.08
COL6A3-212ENST00000491769 NOM1Q5C9Z4 860 aaKnown RBP15.56■□□□□ 0.08
COL6A3-212ENST00000491769 POLR3DP05423 398 aaPredicted RBP15.55■□□□□ 0.08
COL6A3-212ENST00000491769 PPP4R3AQ6IN85 833 aa15.55■□□□□ 0.08
COL6A3-212ENST00000491769 ERCC4Q92889 916 aaPredicted RBP15.55■□□□□ 0.08
COL6A3-212ENST00000491769 MYOM3Q5VTT5 1437 aa15.55■□□□□ 0.08
COL6A3-212ENST00000491769 NEK4P51957 841 aa15.55■□□□□ 0.08
COL6A3-212ENST00000491769 ENOX2Q16206 610 aaKnown RBP15.55■□□□□ 0.08
COL6A3-212ENST00000491769 JMYQ8N9B5 988 aa15.55■□□□□ 0.08
COL6A3-212ENST00000491769 NGLY1Q96IV0 654 aa15.55■□□□□ 0.08
COL6A3-212ENST00000491769 RNF214Q8ND24 703 aa15.55■□□□□ 0.08
COL6A3-212ENST00000491769 IDH1O75874 414 aaKnown RBP15.55■□□□□ 0.08
COL6A3-212ENST00000491769 CCDC181Q5TID7 509 aa15.55■□□□□ 0.08
COL6A3-212ENST00000491769 SRCIN1Q9C0H9 1055 aa15.55■□□□□ 0.08
COL6A3-212ENST00000491769 CA8P35219 290 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 CABP1Q9NZU7 370 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 SERPINC1P01008 464 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 CEP126Q9P2H0 1117 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 EXOSC9Q06265 439 aaKnown RBP15.54■□□□□ 0.08
COL6A3-212ENST00000491769 AACSQ86V21 672 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 CNTLNQ9NXG0 1405 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 DNAI2Q9GZS0 605 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 ZBED9Q6R2W3 1325 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 GAPVD1Q14C86 1478 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 GSE1Q14687 1217 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 LUC7LQ9NQ29 371 aaKnown RBP15.54■□□□□ 0.08
COL6A3-212ENST00000491769 TMOD3Q9NYL9 352 aa15.54■□□□□ 0.08
COL6A3-212ENST00000491769 TCP11L2Q8N4U5 519 aa15.53■□□□□ 0.08
COL6A3-212ENST00000491769 FAM13BQ9NYF5 915 aa15.53■□□□□ 0.08
COL6A3-212ENST00000491769 ZNF692Q9BU19 519 aaPredicted RBP15.53■□□□□ 0.08
COL6A3-212ENST00000491769 PTCD1O75127 700 aaKnown RBP15.53■□□□□ 0.08
COL6A3-212ENST00000491769 PDCP20941 246 aa15.53■□□□□ 0.08
COL6A3-212ENST00000491769 RPGRQ92834 1020 aaKnown RBP15.53■□□□□ 0.08
COL6A3-212ENST00000491769 FYCO1Q9BQS8 1478 aa15.52■□□□□ 0.08
COL6A3-212ENST00000491769 H0YHG0 523 aa15.52■□□□□ 0.08
COL6A3-212ENST00000491769 FIBPO43427 364 aa15.52■□□□□ 0.08
COL6A3-212ENST00000491769 CYP46A1Q9Y6A2 500 aa15.52■□□□□ 0.08
COL6A3-212ENST00000491769 POGZQ7Z3K3 1410 aa15.52■□□□□ 0.08
COL6A3-212ENST00000491769 RRBP1Q9P2E9 1410 aaKnown RBP15.52■□□□□ 0.08
COL6A3-212ENST00000491769 PPFIBP1Q86W92 1011 aa15.52■□□□□ 0.07
COL6A3-212ENST00000491769 STAC3Q96MF2 364 aa15.51■□□□□ 0.07
COL6A3-212ENST00000491769 ME1P48163 572 aa15.51■□□□□ 0.07
COL6A3-212ENST00000491769 CAVIN4Q5BKX8 364 aa15.51■□□□□ 0.07
COL6A3-212ENST00000491769 METTL24Q5JXM2 366 aa15.51■□□□□ 0.07
COL6A3-212ENST00000491769 AXDND1Q5T1B0 1012 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-212ENST00000491769 AIDAQ96BJ3 306 aa15.51■□□□□ 0.07
COL6A3-212ENST00000491769 SEC63Q9UGP8 760 aaKnown RBP15.51■□□□□ 0.07
COL6A3-212ENST00000491769 NOB1Q9ULX3 412 aaKnown RBP15.51■□□□□ 0.07
COL6A3-212ENST00000491769 LRRCC1Q9C099 1032 aa15.51■□□□□ 0.07
COL6A3-212ENST00000491769 PLCD3Q8N3E9 789 aa15.5■□□□□ 0.07
COL6A3-212ENST00000491769 DRC1Q96MC2 740 aa15.5■□□□□ 0.07
COL6A3-212ENST00000491769 DACH1Q9UI36 760 aa15.5■□□□□ 0.07
COL6A3-212ENST00000491769 KIF7Q2M1P5 1343 aa15.5■□□□□ 0.07
COL6A3-212ENST00000491769 CCT4P50991 539 aaKnown RBP15.5■□□□□ 0.07
COL6A3-212ENST00000491769 RTEL1-TNFRSF6BF6WH68 1400 aa15.5■□□□□ 0.07
COL6A3-212ENST00000491769 TAX1BP1Q86VP1 789 aa15.5■□□□□ 0.07
COL6A3-212ENST00000491769 MKNK2Q9HBH9 465 aa15.5■□□□□ 0.07
COL6A3-212ENST00000491769 TOP2AP11388 1531 aaKnown RBP15.5■□□□□ 0.07
COL6A3-212ENST00000491769 RRS1Q15050 365 aaKnown RBP15.5■□□□□ 0.07
COL6A3-212ENST00000491769 PLCD4Q9BRC7 762 aa15.5■□□□□ 0.07
COL6A3-212ENST00000491769 WIZO95785 1651 aa15.5■□□□□ 0.07
COL6A3-212ENST00000491769 POTEJP0CG39 1038 aa15.49■□□□□ 0.07
COL6A3-212ENST00000491769 LIG1P18858 919 aa15.49■□□□□ 0.07
COL6A3-212ENST00000491769 CCDC96Q2M329 555 aa15.49■□□□□ 0.07
COL6A3-212ENST00000491769 DZIP1Q86YF9 867 aaKnown RBP15.49■□□□□ 0.07
COL6A3-212ENST00000491769 TSR2Q969E8 191 aaKnown RBP15.49■□□□□ 0.07
COL6A3-212ENST00000491769 LETM1O95202 739 aaPredicted RBP15.49■□□□□ 0.07
COL6A3-212ENST00000491769 ZNF287Q9HBT7 754 aa15.48■□□□□ 0.07
COL6A3-212ENST00000491769 GOLGA6L10A6NI86 522 aa15.48■□□□□ 0.07
COL6A3-212ENST00000491769 CDKL5O76039 1030 aa15.48■□□□□ 0.07
COL6A3-212ENST00000491769 TSHZ2Q9NRE2 1034 aa15.48■□□□□ 0.07
COL6A3-212ENST00000491769 MPRIPQ6WCQ1 1025 aa15.48■□□□□ 0.07
COL6A3-212ENST00000491769 ADAMTS8Q9UP79 889 aa15.48■□□□□ 0.07
COL6A3-212ENST00000491769 MINDY4BA8MYZ0 360 aa15.48■□□□□ 0.07
COL6A3-212ENST00000491769 EZRP15311 586 aaKnown RBP15.48■□□□□ 0.07
COL6A3-212ENST00000491769 GBP2P32456 591 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-212ENST00000491769 ANKRD1Q15327 319 aa15.48■□□□□ 0.07
COL6A3-212ENST00000491769 TSPYL1Q9H0U9 437 aa15.48■□□□□ 0.07
COL6A3-212ENST00000491769 CENPHQ9H3R5 247 aa15.47■□□□□ 0.07
COL6A3-212ENST00000491769 AQRO60306 1485 aaKnown RBP eCLIP15.47■□□□□ 0.07
COL6A3-212ENST00000491769 SRGAP3O43295 1099 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 CCP110O43303 1012 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 TXLNBQ8N3L3 684 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 ANAPC15P60006 121 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 CTNNA3Q9UI47 895 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 CT47B1P0C2W7 299 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms