RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 ANKRD26Q9UPS8 1709 aa13.6□□□□□ -0.23
HDAC3-210ENST00000490808 COL14A1Q05707 1796 aaKnown RBP13.6□□□□□ -0.23
HDAC3-210ENST00000490808 FNBP4Q8N3X1 1017 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-210ENST00000490808 OVOS2A0A0J9YW53 1432 aa13.57□□□□□ -0.24
HDAC3-210ENST00000490808 ATRNO75882 1429 aa13.57□□□□□ -0.24
HDAC3-210ENST00000490808 OVOS2Q6IE36 1432 aa13.57□□□□□ -0.24
HDAC3-210ENST00000490808 GCP02774 474 aa13.57□□□□□ -0.24
HDAC3-210ENST00000490808 COG3Q96JB2 828 aa13.57□□□□□ -0.24
HDAC3-210ENST00000490808 NUDCQ9Y266 331 aa13.57□□□□□ -0.24
HDAC3-210ENST00000490808 BLMP54132 1417 aaPredicted RBP13.56□□□□□ -0.24
HDAC3-210ENST00000490808 PNNQ9H307 717 aaKnown RBP13.56□□□□□ -0.24
HDAC3-210ENST00000490808 SMG6Q86US8 1419 aaKnown RBP13.56□□□□□ -0.24
HDAC3-210ENST00000490808 SLIT2O94813 1529 aa13.55□□□□□ -0.24
HDAC3-210ENST00000490808 FYB1O15117 783 aa13.55□□□□□ -0.24
HDAC3-210ENST00000490808 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.55□□□□□ -0.24
HDAC3-210ENST00000490808 PELP1Q8IZL8 1130 aaKnown RBP13.55□□□□□ -0.24
HDAC3-210ENST00000490808 ADAMTS8Q9UP79 889 aa13.55□□□□□ -0.24
HDAC3-210ENST00000490808 KIF24Q5T7B8 1368 aa13.55□□□□□ -0.24
HDAC3-210ENST00000490808 PLCH1Q4KWH8 1693 aa13.54□□□□□ -0.24
HDAC3-210ENST00000490808 EP400Q96L91 3159 aa13.54□□□□□ -0.24
HDAC3-210ENST00000490808 ERICH6BQ5W0A0 696 aa13.54□□□□□ -0.24
HDAC3-210ENST00000490808 PRDM11Q9NQV5 511 aa13.54□□□□□ -0.24
HDAC3-210ENST00000490808 AATKQ6ZMQ8 1374 aa13.54□□□□□ -0.24
HDAC3-210ENST00000490808 TNNT2P45379 298 aaPredicted RBP13.53□□□□□ -0.24
HDAC3-210ENST00000490808 MTHFSP49914 203 aa13.53□□□□□ -0.24
HDAC3-210ENST00000490808 CABLES1Q8TDN4 633 aa13.53□□□□□ -0.24
HDAC3-210ENST00000490808 NFAT5O94916 1531 aa13.53□□□□□ -0.24
HDAC3-210ENST00000490808 LRP5O75197 1615 aa13.53□□□□□ -0.24
HDAC3-210ENST00000490808 NME9Q86XW9 330 aa13.52□□□□□ -0.25
HDAC3-210ENST00000490808 UNC5CLQ8IV45 518 aa13.52□□□□□ -0.25
HDAC3-210ENST00000490808 GGNBP2Q9H3C7 697 aa13.52□□□□□ -0.25
HDAC3-210ENST00000490808 KIAA0232Q92628 1395 aa13.52□□□□□ -0.25
HDAC3-210ENST00000490808 LTN1O94822 1766 aa13.52□□□□□ -0.25
HDAC3-210ENST00000490808 BCL9LQ86UU0 1499 aa13.51□□□□□ -0.25
HDAC3-210ENST00000490808 RTL1A6NKG5 1358 aa13.51□□□□□ -0.25
HDAC3-210ENST00000490808 NUTM2GQ5VZR2 741 aa13.51□□□□□ -0.25
HDAC3-210ENST00000490808 ARHGEF25Q86VW2 580 aa13.51□□□□□ -0.25
HDAC3-210ENST00000490808 GJD4Q96KN9 370 aaPredicted RBP13.51□□□□□ -0.25
HDAC3-210ENST00000490808 LMO7Q8WWI1 1683 aa13.5□□□□□ -0.25
HDAC3-210ENST00000490808 FAM83GA6ND36 823 aa13.5□□□□□ -0.25
HDAC3-210ENST00000490808 DEFB132Q7Z7B7 95 aa13.5□□□□□ -0.25
HDAC3-210ENST00000490808 NRAPQ86VF7 1730 aa13.5□□□□□ -0.25
HDAC3-210ENST00000490808 MAP2P11137 1827 aaKnown RBP13.49□□□□□ -0.25
HDAC3-210ENST00000490808 NEFMP07197 916 aa13.49□□□□□ -0.25
HDAC3-210ENST00000490808 SF3B2Q13435 895 aaKnown RBP13.49□□□□□ -0.25
HDAC3-210ENST00000490808 NCBP3Q53F19 620 aaKnown RBP13.49□□□□□ -0.25
HDAC3-210ENST00000490808 SUPT16HQ9Y5B9 1047 aaKnown RBP13.49□□□□□ -0.25
HDAC3-210ENST00000490808 COL18A1P39060 1754 aa13.49□□□□□ -0.25
HDAC3-210ENST00000490808 FAM208AQ9UK61 1670 aaKnown RBP13.49□□□□□ -0.25
HDAC3-210ENST00000490808 BRWD3Q6RI45 1802 aa13.48□□□□□ -0.25
HDAC3-210ENST00000490808 ZC3H6P61129 1189 aaKnown RBP13.48□□□□□ -0.25
HDAC3-210ENST00000490808 FKBP8Q14318 412 aa13.48□□□□□ -0.25
HDAC3-210ENST00000490808 VPS72Q15906 364 aa13.48□□□□□ -0.25
HDAC3-210ENST00000490808 RUNDC1Q96C34 613 aa13.48□□□□□ -0.25
HDAC3-210ENST00000490808 BTG4Q9NY30 223 aa13.47□□□□□ -0.25
HDAC3-210ENST00000490808 DIAPH1O60610 1272 aaKnown RBP13.46□□□□□ -0.25
HDAC3-210ENST00000490808 GLI3P10071 1580 aa13.45□□□□□ -0.26
HDAC3-210ENST00000490808 GOLGA2Q08379 1002 aa13.45□□□□□ -0.26
HDAC3-210ENST00000490808 IP6K1Q92551 441 aa13.45□□□□□ -0.26
HDAC3-210ENST00000490808 THRAP3Q9Y2W1 955 aaKnown RBP13.45□□□□□ -0.26
HDAC3-210ENST00000490808 SALL2Q9Y467 1007 aaPredicted RBP13.45□□□□□ -0.26
HDAC3-210ENST00000490808 FLT4P35916 1363 aa13.45□□□□□ -0.26
HDAC3-210ENST00000490808 CAMTA1Q9Y6Y1 1673 aa13.44□□□□□ -0.26
HDAC3-210ENST00000490808 COL5A2P05997 1499 aaPredicted RBP13.44□□□□□ -0.26
HDAC3-210ENST00000490808 PSDA5PKW4 1024 aaPredicted RBP13.44□□□□□ -0.26
HDAC3-210ENST00000490808 U2AF1L5P0DN76 240 aaPredicted RBP13.44□□□□□ -0.26
HDAC3-210ENST00000490808 EVA1CP58658 441 aa13.44□□□□□ -0.26
HDAC3-210ENST00000490808 U2AF1Q01081 240 aaKnown RBP eCLIP13.44□□□□□ -0.26
HDAC3-210ENST00000490808 RGPD5Q99666 1765 aa13.44□□□□□ -0.26
HDAC3-210ENST00000490808 AMPHP49418 695 aa13.43□□□□□ -0.26
HDAC3-210ENST00000490808 CRB1P82279 1406 aa13.43□□□□□ -0.26
HDAC3-210ENST00000490808 CDCA7Q9BWT1 371 aaPredicted RBP13.43□□□□□ -0.26
HDAC3-210ENST00000490808 WDR17Q8IZU2 1322 aa13.42□□□□□ -0.26
HDAC3-210ENST00000490808 MAPK8IP3Q9UPT6 1336 aa13.42□□□□□ -0.26
HDAC3-210ENST00000490808 APAF1O14727 1248 aa13.42□□□□□ -0.26
HDAC3-210ENST00000490808 U2SURPO15042 1029 aaKnown RBP13.42□□□□□ -0.26
HDAC3-210ENST00000490808 PLEKHG5O94827 1062 aa13.42□□□□□ -0.26
HDAC3-210ENST00000490808 CHRNA2Q15822 529 aa13.42□□□□□ -0.26
HDAC3-210ENST00000490808 CCDC146Q8IYE0 955 aa13.42□□□□□ -0.26
HDAC3-210ENST00000490808 MAP3K19Q56UN5 1328 aa13.41□□□□□ -0.26
HDAC3-210ENST00000490808 SPATA31A5Q5VU36 1347 aa13.41□□□□□ -0.26
HDAC3-210ENST00000490808 SPATA31A7Q8IWB4 1347 aa13.41□□□□□ -0.26
HDAC3-210ENST00000490808 ONECUT3O60422 494 aaPredicted RBP13.41□□□□□ -0.26
HDAC3-210ENST00000490808 BARGINQ6ZT62 677 aa13.41□□□□□ -0.26
HDAC3-210ENST00000490808 PLEKHG2Q9H7P9 1386 aa13.41□□□□□ -0.26
HDAC3-210ENST00000490808 ERBB3P21860 1342 aa13.4□□□□□ -0.26
HDAC3-210ENST00000490808 E9PSI1 815 aa13.4□□□□□ -0.26
HDAC3-210ENST00000490808 PPM1GO15355 546 aaPredicted RBP13.4□□□□□ -0.26
HDAC3-210ENST00000490808 SOX12O15370 315 aa13.4□□□□□ -0.26
HDAC3-210ENST00000490808 FCHSD2O94868 740 aa13.4□□□□□ -0.26
HDAC3-210ENST00000490808 HOXC9P31274 260 aa13.4□□□□□ -0.26
HDAC3-210ENST00000490808 CCDC27Q2M243 656 aa13.4□□□□□ -0.26
HDAC3-210ENST00000490808 SEPT12Q8IYM1 358 aa13.4□□□□□ -0.26
HDAC3-210ENST00000490808 POLKQ9UBT6 870 aa13.4□□□□□ -0.26
HDAC3-210ENST00000490808 RCAN3Q9UKA8 241 aa13.4□□□□□ -0.26
HDAC3-210ENST00000490808 SPATA31A1Q5TZJ5 1347 aa13.39□□□□□ -0.27
HDAC3-210ENST00000490808 WDR63Q8IWG1 891 aa13.39□□□□□ -0.27
HDAC3-210ENST00000490808 TCP11L2Q8N4U5 519 aa13.39□□□□□ -0.27
HDAC3-210ENST00000490808 CARD10Q9BWT7 1032 aa13.39□□□□□ -0.27
HDAC3-210ENST00000490808 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms