RNA–Protein interactions for RNA: ENST00000490081.5

HDAC1-210, Transcript of histone deacetylase 1, humanhuman

TSL 3

Gene HDAC1, Length 1,047 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-210ENST00000490081 PRDM11Q9NQV5 511 aa16.93■□□□□ 0.3
HDAC1-210ENST00000490081 MAP3K19Q56UN5 1328 aa16.93■□□□□ 0.3
HDAC1-210ENST00000490081 INSRP06213 1382 aa16.92■□□□□ 0.3
HDAC1-210ENST00000490081 NGLY1Q96IV0 654 aa16.92■□□□□ 0.3
HDAC1-210ENST00000490081 PRKRIP1Q9H875 184 aaPredicted RBP16.92■□□□□ 0.3
HDAC1-210ENST00000490081 BLMP54132 1417 aaPredicted RBP16.91■□□□□ 0.3
HDAC1-210ENST00000490081 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.9■□□□□ 0.3
HDAC1-210ENST00000490081 FLT4P35916 1363 aa16.89■□□□□ 0.3
HDAC1-210ENST00000490081 PLCH1Q4KWH8 1693 aa16.89■□□□□ 0.29
HDAC1-210ENST00000490081 CAMTA1Q9Y6Y1 1673 aa16.89■□□□□ 0.29
HDAC1-210ENST00000490081 FBLN1P23142 703 aa16.89■□□□□ 0.29
HDAC1-210ENST00000490081 PPP2R1AP30153 589 aa16.89■□□□□ 0.29
HDAC1-210ENST00000490081 HOXC9P31274 260 aa16.89■□□□□ 0.29
HDAC1-210ENST00000490081 RRS1Q15050 365 aaKnown RBP16.89■□□□□ 0.29
HDAC1-210ENST00000490081 ATRNO75882 1429 aa16.88■□□□□ 0.29
HDAC1-210ENST00000490081 BCL9LQ86UU0 1499 aa16.88■□□□□ 0.29
HDAC1-210ENST00000490081 PEAK1Q9H792 1746 aa16.88■□□□□ 0.29
HDAC1-210ENST00000490081 RGPD5Q99666 1765 aa16.88■□□□□ 0.29
HDAC1-210ENST00000490081 AMPHP49418 695 aa16.88■□□□□ 0.29
HDAC1-210ENST00000490081 USP21Q9UK80 565 aa16.88■□□□□ 0.29
HDAC1-210ENST00000490081 AXIN2Q9Y2T1 843 aa16.88■□□□□ 0.29
HDAC1-210ENST00000490081 SOX12O15370 315 aa16.87■□□□□ 0.29
HDAC1-210ENST00000490081 PLEKHG5O94827 1062 aa16.87■□□□□ 0.29
HDAC1-210ENST00000490081 TNNT2P45379 298 aaPredicted RBP16.87■□□□□ 0.29
HDAC1-210ENST00000490081 MTHFSP49914 203 aa16.87■□□□□ 0.29
HDAC1-210ENST00000490081 CHRNA2Q15822 529 aa16.87■□□□□ 0.29
HDAC1-210ENST00000490081 EMILIN1Q9Y6C2 1016 aa16.87■□□□□ 0.29
HDAC1-210ENST00000490081 ANP32CO43423 234 aa16.86■□□□□ 0.29
HDAC1-210ENST00000490081 UNC5CLQ8IV45 518 aa16.86■□□□□ 0.29
HDAC1-210ENST00000490081 BTG4Q9NY30 223 aa16.86■□□□□ 0.29
HDAC1-210ENST00000490081 TRPC5Q9UL62 973 aaPredicted RBP16.86■□□□□ 0.29
HDAC1-210ENST00000490081 NRAPQ86VF7 1730 aa16.86■□□□□ 0.29
HDAC1-210ENST00000490081 MYBBP1AQ9BQG0 1328 aaKnown RBP16.86■□□□□ 0.29
HDAC1-210ENST00000490081 COL5A2P05997 1499 aaPredicted RBP16.85■□□□□ 0.29
HDAC1-210ENST00000490081 FAM208AQ9UK61 1670 aaKnown RBP16.85■□□□□ 0.29
HDAC1-210ENST00000490081 ERBB3P21860 1342 aa16.83■□□□□ 0.28
HDAC1-210ENST00000490081 VPS72Q15906 364 aa16.83■□□□□ 0.28
HDAC1-210ENST00000490081 HSP90AB2PQ58FF8 381 aa16.83■□□□□ 0.28
HDAC1-210ENST00000490081 WDR17Q8IZU2 1322 aa16.83■□□□□ 0.28
HDAC1-210ENST00000490081 DIEXFQ68CQ4 756 aaKnown RBP16.82■□□□□ 0.28
HDAC1-210ENST00000490081 EVA1CP58658 441 aa16.81■□□□□ 0.28
HDAC1-210ENST00000490081 ANKRD24Q8TF21 1146 aa16.81■□□□□ 0.28
HDAC1-210ENST00000490081 CFAP53Q96M91 514 aa16.81■□□□□ 0.28
HDAC1-210ENST00000490081 PPM1GO15355 546 aaPredicted RBP16.8■□□□□ 0.28
HDAC1-210ENST00000490081 CARD10Q9BWT7 1032 aa16.8■□□□□ 0.28
HDAC1-210ENST00000490081 THRAP3Q9Y2W1 955 aaKnown RBP16.8■□□□□ 0.28
HDAC1-210ENST00000490081 COL3A1P02461 1466 aaPredicted RBP16.8■□□□□ 0.28
HDAC1-210ENST00000490081 CRB1P82279 1406 aa16.79■□□□□ 0.28
HDAC1-210ENST00000490081 SPATA31A5Q5VU36 1347 aa16.79■□□□□ 0.28
HDAC1-210ENST00000490081 SPATA31A7Q8IWB4 1347 aa16.79■□□□□ 0.28
HDAC1-210ENST00000490081 ZBTB7CA1YPR0 619 aa16.79■□□□□ 0.28
HDAC1-210ENST00000490081 IL13P35225 146 aa16.79■□□□□ 0.28
HDAC1-210ENST00000490081 CNGB1Q14028 1251 aaPredicted RBP16.79■□□□□ 0.28
HDAC1-210ENST00000490081 NCAPD2Q15021 1401 aa16.79■□□□□ 0.28
HDAC1-210ENST00000490081 DIAPH1O60610 1272 aaKnown RBP16.78■□□□□ 0.28
HDAC1-210ENST00000490081 EIF4A2Q14240 407 aaKnown RBP16.78■□□□□ 0.28
HDAC1-210ENST00000490081 GJD4Q96KN9 370 aaPredicted RBP16.78■□□□□ 0.28
HDAC1-210ENST00000490081 PLEKHG2Q9H7P9 1386 aa16.77■□□□□ 0.28
HDAC1-210ENST00000490081 GLI3P10071 1580 aa16.77■□□□□ 0.28
HDAC1-210ENST00000490081 SPATA31A1Q5TZJ5 1347 aa16.77■□□□□ 0.28
HDAC1-210ENST00000490081 ONECUT3O60422 494 aaPredicted RBP16.77■□□□□ 0.28
HDAC1-210ENST00000490081 LARP1Q6PKG0 1096 aaKnown RBP16.77■□□□□ 0.28
HDAC1-210ENST00000490081 RGPD1P0DJD0 1748 aa16.76■□□□□ 0.27
HDAC1-210ENST00000490081 BARGINQ6ZT62 677 aa16.76■□□□□ 0.27
HDAC1-210ENST00000490081 STRN4Q9NRL3 753 aa16.76■□□□□ 0.27
HDAC1-210ENST00000490081 IGSF1Q8N6C5 1336 aa16.75■□□□□ 0.27
HDAC1-210ENST00000490081 NBPF6Q5VWK0 638 aa16.75■□□□□ 0.27
HDAC1-210ENST00000490081 NBPF4Q96M43 638 aa16.75■□□□□ 0.27
HDAC1-210ENST00000490081 NUDCQ9Y266 331 aa16.75■□□□□ 0.27
HDAC1-210ENST00000490081 RGPD2P0DJD1 1756 aa16.74■□□□□ 0.27
HDAC1-210ENST00000490081 CSB-PGBD3P0DP91 1061 aa16.74■□□□□ 0.27
HDAC1-210ENST00000490081 TOM1L2Q6ZVM7 507 aa16.74■□□□□ 0.27
HDAC1-210ENST00000490081 TCP11L2Q8N4U5 519 aa16.74■□□□□ 0.27
HDAC1-210ENST00000490081 EYA1Q99502 592 aa16.74■□□□□ 0.27
HDAC1-210ENST00000490081 CDCA7Q9BWT1 371 aaPredicted RBP16.74■□□□□ 0.27
HDAC1-210ENST00000490081 CCER2I3L3R5 266 aa16.73■□□□□ 0.27
HDAC1-210ENST00000490081 NLRP2Q9NX02 1062 aa16.73■□□□□ 0.27
HDAC1-210ENST00000490081 KDRP35968 1356 aa16.73■□□□□ 0.27
HDAC1-210ENST00000490081 LTV1Q96GA3 475 aaPredicted RBP16.72■□□□□ 0.27
HDAC1-210ENST00000490081 BRWD3Q6RI45 1802 aa16.7■□□□□ 0.26
HDAC1-210ENST00000490081 DISP2A7MBM2 1401 aa16.7■□□□□ 0.26
HDAC1-210ENST00000490081 WNK3Q9BYP7 1800 aa16.69■□□□□ 0.26
HDAC1-210ENST00000490081 FCHSD2O94868 740 aa16.69■□□□□ 0.26
HDAC1-210ENST00000490081 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.69■□□□□ 0.264e-8■□□□□ 9.6
HDAC1-210ENST00000490081 CCDC9Q9Y3X0 531 aaKnown RBP16.68■□□□□ 0.26
HDAC1-210ENST00000490081 THSD7AQ9UPZ6 1657 aa16.67■□□□□ 0.26
HDAC1-210ENST00000490081 IL2RBP14784 551 aa16.67■□□□□ 0.26
HDAC1-210ENST00000490081 PARP4Q9UKK3 1724 aaKnown RBP16.67■□□□□ 0.26
HDAC1-210ENST00000490081 CCDC125Q86Z20 511 aa16.66■□□□□ 0.26
HDAC1-210ENST00000490081 PNISRQ8TF01 805 aaKnown RBP16.66■□□□□ 0.26
HDAC1-210ENST00000490081 PNNQ9H307 717 aaKnown RBP16.66■□□□□ 0.26
HDAC1-210ENST00000490081 CCDC184Q52MB2 194 aa16.65■□□□□ 0.26
HDAC1-210ENST00000490081 SULT6B1Q6IMI4 303 aa16.65■□□□□ 0.26
HDAC1-210ENST00000490081 MIER1Q8N108 512 aa16.65■□□□□ 0.26
HDAC1-210ENST00000490081 RAPGEF4Q8WZA2 1011 aa16.65■□□□□ 0.26
HDAC1-210ENST00000490081 EP400Q96L91 3159 aa16.65■□□□□ 0.26
HDAC1-210ENST00000490081 OVOS2A0A0G2JMS6 1433 aa16.64■□□□□ 0.25
HDAC1-210ENST00000490081 U2SURPO15042 1029 aaKnown RBP16.64■□□□□ 0.25
HDAC1-210ENST00000490081 U2AF1L5P0DN76 240 aaPredicted RBP16.64■□□□□ 0.25
HDAC1-210ENST00000490081 U2AF1Q01081 240 aaKnown RBP eCLIP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms