RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 USP32Q8NFA0 1604 aa11.32□□□□□ -0.6
VTI1A-207ENST00000489357 KNSTRNQ9Y448 316 aa11.32□□□□□ -0.6
VTI1A-207ENST00000489357 QRICH2Q9H0J4 1663 aa11.31□□□□□ -0.6
VTI1A-207ENST00000489357 BLMP54132 1417 aaPredicted RBP11.31□□□□□ -0.6
VTI1A-207ENST00000489357 MST1RQ04912 1400 aa11.31□□□□□ -0.6
VTI1A-207ENST00000489357 CDC42BPGQ6DT37 1551 aa11.31□□□□□ -0.6
VTI1A-207ENST00000489357 ROBO1Q9Y6N7 1651 aa11.3□□□□□ -0.6
VTI1A-207ENST00000489357 ADGRB2O60241 1585 aa11.3□□□□□ -0.6
VTI1A-207ENST00000489357 SLC39A7Q92504 469 aa11.3□□□□□ -0.6
VTI1A-207ENST00000489357 TRAK1Q9UPV9 953 aa11.3□□□□□ -0.6
VTI1A-207ENST00000489357 NUDCQ9Y266 331 aa11.3□□□□□ -0.6
VTI1A-207ENST00000489357 RNF123Q5XPI4 1314 aa11.3□□□□□ -0.6
VTI1A-207ENST00000489357 CENPJQ9HC77 1338 aaPredicted RBP11.3□□□□□ -0.6
VTI1A-207ENST00000489357 NINLQ9Y2I6 1382 aa11.29□□□□□ -0.6
VTI1A-207ENST00000489357 ATF3P18847 181 aa11.29□□□□□ -0.6
VTI1A-207ENST00000489357 HAP1P54257 671 aaPredicted RBP11.29□□□□□ -0.6
VTI1A-207ENST00000489357 C14orf37Q86TY3 774 aa11.29□□□□□ -0.6
VTI1A-207ENST00000489357 NGEFQ8N5V2 710 aa11.29□□□□□ -0.6
VTI1A-207ENST00000489357 PRAM1Q96QH2 718 aa11.29□□□□□ -0.6
VTI1A-207ENST00000489357 FMN2Q9NZ56 1722 aa11.29□□□□□ -0.6
VTI1A-207ENST00000489357 C1orf167Q5SNV9 1468 aa11.28□□□□□ -0.6
VTI1A-207ENST00000489357 MS4A4AQ96JQ5 239 aa11.28□□□□□ -0.6
VTI1A-207ENST00000489357 RGPD8O14715 1765 aaPredicted RBP11.28□□□□□ -0.6
VTI1A-207ENST00000489357 C7P10643 843 aa11.27□□□□□ -0.61
VTI1A-207ENST00000489357 IRX5P78411 483 aaPredicted RBP11.27□□□□□ -0.61
VTI1A-207ENST00000489357 BRINP3Q76B58 766 aa11.26□□□□□ -0.61
VTI1A-207ENST00000489357 OCEL1Q9H607 264 aa11.26□□□□□ -0.61
VTI1A-207ENST00000489357 MED1Q15648 1581 aaPredicted RBP11.25□□□□□ -0.61
VTI1A-207ENST00000489357 NHSL1Q5SYE7 1610 aa11.25□□□□□ -0.61
VTI1A-207ENST00000489357 AHDC1Q5TGY3 1603 aaPredicted RBP11.25□□□□□ -0.61
VTI1A-207ENST00000489357 SEC24BO95487 1268 aa11.25□□□□□ -0.61
VTI1A-207ENST00000489357 PLCG2P16885 1265 aa11.25□□□□□ -0.61
VTI1A-207ENST00000489357 PPP4R2Q9NY27 417 aa11.25□□□□□ -0.61
VTI1A-207ENST00000489357 POGKQ9P215 609 aa11.25□□□□□ -0.61
VTI1A-207ENST00000489357 NSD2O96028 1365 aa11.25□□□□□ -0.61
VTI1A-207ENST00000489357 PPP1R37O75864 691 aa11.24□□□□□ -0.61
VTI1A-207ENST00000489357 METRNQ9UJH8 293 aa11.24□□□□□ -0.61
VTI1A-207ENST00000489357 WASLO00401 505 aaPredicted RBP11.23□□□□□ -0.61
VTI1A-207ENST00000489357 PPP2R1AP30153 589 aa11.23□□□□□ -0.61
VTI1A-207ENST00000489357 CC2D1BQ5T0F9 858 aaKnown RBP11.23□□□□□ -0.61
VTI1A-207ENST00000489357 PDCD7Q8N8D1 485 aaKnown RBP11.23□□□□□ -0.61
VTI1A-207ENST00000489357 EVC2Q86UK5 1308 aa11.23□□□□□ -0.61
VTI1A-207ENST00000489357 PHLPP1O60346 1717 aa11.23□□□□□ -0.61
VTI1A-207ENST00000489357 COL16A1Q07092 1604 aaPredicted RBP11.22□□□□□ -0.61
VTI1A-207ENST00000489357 SAFB2Q14151 953 aaKnown RBP eCLIP11.22□□□□□ -0.61
VTI1A-207ENST00000489357 ANKARQ7Z5J8 1434 aa11.22□□□□□ -0.61
VTI1A-207ENST00000489357 ORAI2Q96SN7 254 aa11.22□□□□□ -0.61
VTI1A-207ENST00000489357 TSHZ2Q9NRE2 1034 aa11.22□□□□□ -0.61
VTI1A-207ENST00000489357 COLQQ9Y215 455 aaPredicted RBP11.22□□□□□ -0.61
VTI1A-207ENST00000489357 TULP4Q9NRJ4 1543 aa11.21□□□□□ -0.61
VTI1A-207ENST00000489357 MINK1Q8N4C8 1332 aaPredicted RBP11.21□□□□□ -0.61
VTI1A-207ENST00000489357 PRR36Q9H6K5 1346 aa11.21□□□□□ -0.61
VTI1A-207ENST00000489357 DPY19L2Q6NUT2 758 aa11.21□□□□□ -0.61
VTI1A-207ENST00000489357 POLR3AO14802 1390 aaPredicted RBP11.2□□□□□ -0.62
VTI1A-207ENST00000489357 SOS2Q07890 1332 aaPredicted RBP11.2□□□□□ -0.62
VTI1A-207ENST00000489357 WDR43Q15061 677 aaKnown RBP eCLIP11.2□□□□□ -0.62
VTI1A-207ENST00000489357 ILDR2Q71H61 639 aa11.2□□□□□ -0.62
VTI1A-207ENST00000489357 ATAD2Q6PL18 1390 aa11.19□□□□□ -0.62
VTI1A-207ENST00000489357 ANKRD36BQ8N2N9 1353 aa11.19□□□□□ -0.62
VTI1A-207ENST00000489357 CDK19Q9BWU1 502 aa11.19□□□□□ -0.62
VTI1A-207ENST00000489357 KIF1AQ12756 1690 aa11.19□□□□□ -0.62
VTI1A-207ENST00000489357 TOPAZ1Q8N9V7 1692 aa11.19□□□□□ -0.62
VTI1A-207ENST00000489357 ATP7BP35670 1465 aa11.19□□□□□ -0.62
VTI1A-207ENST00000489357 CGNL1Q0VF96 1302 aa11.18□□□□□ -0.62
VTI1A-207ENST00000489357 PLEKHG3A1L390 1219 aa11.18□□□□□ -0.62
VTI1A-207ENST00000489357 POTEFA5A3E0 1075 aa11.18□□□□□ -0.62
VTI1A-207ENST00000489357 PXDNQ92626 1479 aa11.18□□□□□ -0.62
VTI1A-207ENST00000489357 ITSN1Q15811 1721 aa11.18□□□□□ -0.62
VTI1A-207ENST00000489357 ESCO1Q5FWF5 840 aa11.17□□□□□ -0.62
VTI1A-207ENST00000489357 NUDT16Q96DE0 195 aaKnown RBP11.17□□□□□ -0.62
VTI1A-207ENST00000489357 NUTM2FA1L443 756 aa11.16□□□□□ -0.62
VTI1A-207ENST00000489357 DDX17Q92841 729 aaKnown RBP11.16□□□□□ -0.62
VTI1A-207ENST00000489357 SHPRHQ149N8 1683 aa11.16□□□□□ -0.62
VTI1A-207ENST00000489357 NSD3Q9BZ95 1437 aa11.16□□□□□ -0.62
VTI1A-207ENST00000489357 JCADQ9P266 1359 aa11.16□□□□□ -0.62
VTI1A-207ENST00000489357 ANKRD26Q9UPS8 1709 aa11.15□□□□□ -0.62
VTI1A-207ENST00000489357 NPHP3Q7Z494 1330 aa11.15□□□□□ -0.62
VTI1A-207ENST00000489357 CNGB1Q14028 1251 aaPredicted RBP11.15□□□□□ -0.62
VTI1A-207ENST00000489357 CARD14Q9BXL6 1004 aa11.15□□□□□ -0.62
VTI1A-207ENST00000489357 TRPM3Q9HCF6 1732 aaPredicted RBP11.15□□□□□ -0.63
VTI1A-207ENST00000489357 FOXO3O43524 673 aa11.14□□□□□ -0.63
VTI1A-207ENST00000489357 LRRC59Q96AG4 307 aaKnown RBP11.14□□□□□ -0.63
VTI1A-207ENST00000489357 L3MBTL3Q96JM7 780 aaPredicted RBP11.14□□□□□ -0.63
VTI1A-207ENST00000489357 RCAN3Q9UKA8 241 aa11.14□□□□□ -0.63
VTI1A-207ENST00000489357 ZNF521Q96K83 1311 aa11.13□□□□□ -0.63
VTI1A-207ENST00000489357 G3V3G9 751 aa11.13□□□□□ -0.63
VTI1A-207ENST00000489357 ADAMTS8Q9UP79 889 aa11.13□□□□□ -0.63
VTI1A-207ENST00000489357 BOLA1Q9Y3E2 137 aa11.13□□□□□ -0.63
VTI1A-207ENST00000489357 SBNO1A3KN83 1393 aa11.13□□□□□ -0.63
VTI1A-207ENST00000489357 LRP6O75581 1613 aa11.13□□□□□ -0.63
VTI1A-207ENST00000489357 COL22A1Q8NFW1 1626 aaPredicted RBP11.13□□□□□ -0.63
VTI1A-207ENST00000489357 ALS2Q96Q42 1657 aa11.12□□□□□ -0.63
VTI1A-207ENST00000489357 VSIG10Q8N0Z9 540 aa11.12□□□□□ -0.63
VTI1A-207ENST00000489357 TERF2IPQ9NYB0 399 aa11.12□□□□□ -0.63
VTI1A-207ENST00000489357 PNPLA6Q8IY17 1366 aa11.12□□□□□ -0.63
VTI1A-207ENST00000489357 SPATA31A3Q5VYP0 1347 aa11.11□□□□□ -0.63
VTI1A-207ENST00000489357 AKAP12Q02952 1782 aa11.11□□□□□ -0.63
VTI1A-207ENST00000489357 RRP1P56182 461 aaKnown RBP11.11□□□□□ -0.63
VTI1A-207ENST00000489357 KRT28Q7Z3Y7 464 aa11.11□□□□□ -0.63
VTI1A-207ENST00000489357 PMFBP1Q8TBY8 1022 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms