RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 NRAPQ86VF7 1730 aa26.2■■□□□ 1.78
CCM2-216ENST00000488727 EMILIN1Q9Y6C2 1016 aa26.19■■□□□ 1.78
CCM2-216ENST00000488727 ABCC6O95255 1503 aa26.18■■□□□ 1.78
CCM2-216ENST00000488727 AFF2P51816 1311 aa26.18■■□□□ 1.78
CCM2-216ENST00000488727 FNBP4Q8N3X1 1017 aaPredicted RBP26.18■■□□□ 1.78
CCM2-216ENST00000488727 AXIN2Q9Y2T1 843 aa26.18■■□□□ 1.78
CCM2-216ENST00000488727 BTG4Q9NY30 223 aa26.17■■□□□ 1.78
CCM2-216ENST00000488727 POLKQ9UBT6 870 aa26.17■■□□□ 1.78
CCM2-216ENST00000488727 BCL9LQ86UU0 1499 aa26.17■■□□□ 1.78
CCM2-216ENST00000488727 PARD3Q8TEW0 1356 aa26.17■■□□□ 1.78
CCM2-216ENST00000488727 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.16■■□□□ 1.78
CCM2-216ENST00000488727 SMG6Q86US8 1419 aaKnown RBP26.15■■□□□ 1.78
CCM2-216ENST00000488727 RTL1A6NKG5 1358 aa26.14■■□□□ 1.78
CCM2-216ENST00000488727 HOXC9P31274 260 aa26.14■■□□□ 1.77
CCM2-216ENST00000488727 AMPHP49418 695 aa26.14■■□□□ 1.77
CCM2-216ENST00000488727 COL5A2P05997 1499 aaPredicted RBP26.13■■□□□ 1.77
CCM2-216ENST00000488727 IP6K1Q92551 441 aa26.13■■□□□ 1.77
CCM2-216ENST00000488727 RGS17Q9UGC6 210 aaPredicted RBP26.12■■□□□ 1.77
CCM2-216ENST00000488727 USP21Q9UK80 565 aa26.12■■□□□ 1.77
CCM2-216ENST00000488727 KIF24Q5T7B8 1368 aa26.12■■□□□ 1.77
CCM2-216ENST00000488727 PPM1GO15355 546 aaPredicted RBP26.11■■□□□ 1.77
CCM2-216ENST00000488727 FLT4P35916 1363 aa26.11■■□□□ 1.77
CCM2-216ENST00000488727 BLMP54132 1417 aaPredicted RBP26.1■■□□□ 1.77
CCM2-216ENST00000488727 UNC5CLQ8IV45 518 aa26.1■■□□□ 1.77
CCM2-216ENST00000488727 HSP90AB2PQ58FF8 381 aa26.09■■□□□ 1.77
CCM2-216ENST00000488727 PHF23Q9BUL5 403 aaPredicted RBP26.09■■□□□ 1.77
CCM2-216ENST00000488727 PPP2R1AP30153 589 aa26.08■■□□□ 1.77
CCM2-216ENST00000488727 CDK12Q9NYV4 1490 aaPredicted RBP26.08■■□□□ 1.77
CCM2-216ENST00000488727 MTHFSP49914 203 aa26.08■■□□□ 1.76
CCM2-216ENST00000488727 RALBP1Q15311 655 aa26.08■■□□□ 1.76
CCM2-216ENST00000488727 PRKRIP1Q9H875 184 aaPredicted RBP26.08■■□□□ 1.76
CCM2-216ENST00000488727 STRN4Q9NRL3 753 aa26.08■■□□□ 1.76
CCM2-216ENST00000488727 ERBB3P21860 1342 aa26.07■■□□□ 1.76
CCM2-216ENST00000488727 INSRP06213 1382 aa26.06■■□□□ 1.76
CCM2-216ENST00000488727 ATRNO75882 1429 aa26.05■■□□□ 1.76
CCM2-216ENST00000488727 ZNF772Q68DY9 489 aaPredicted RBP26.05■■□□□ 1.76
CCM2-216ENST00000488727 RGPD2P0DJD1 1756 aa26.04■■□□□ 1.76
CCM2-216ENST00000488727 EVA1CP58658 441 aa26.04■■□□□ 1.76
CCM2-216ENST00000488727 LARP1Q6PKG0 1096 aaKnown RBP26.04■■□□□ 1.76
CCM2-216ENST00000488727 ANKRD24Q8TF21 1146 aa26.04■■□□□ 1.76
CCM2-216ENST00000488727 WDR17Q8IZU2 1322 aa26.03■■□□□ 1.76
CCM2-216ENST00000488727 LTV1Q96GA3 475 aaPredicted RBP26.02■■□□□ 1.76
CCM2-216ENST00000488727 FAM208AQ9UK61 1670 aaKnown RBP26.02■■□□□ 1.76
CCM2-216ENST00000488727 VPS72Q15906 364 aa26.02■■□□□ 1.76
CCM2-216ENST00000488727 QTRT2Q9H974 415 aaKnown RBP26.01■■□□□ 1.75
CCM2-216ENST00000488727 TRPC5Q9UL62 973 aaPredicted RBP26.01■■□□□ 1.75
CCM2-216ENST00000488727 CRB1P82279 1406 aa26■■□□□ 1.75
CCM2-216ENST00000488727 GLI3P10071 1580 aa26■■□□□ 1.75
CCM2-216ENST00000488727 COL3A1P02461 1466 aaPredicted RBP26■■□□□ 1.75
CCM2-216ENST00000488727 MYBBP1AQ9BQG0 1328 aaKnown RBP26■■□□□ 1.75
CCM2-216ENST00000488727 CSB-PGBD3P0DP91 1061 aa26■■□□□ 1.75
CCM2-216ENST00000488727 POTEAQ6S8J7 498 aa26■■□□□ 1.75
CCM2-216ENST00000488727 SPATA31A5Q5VU36 1347 aa25.98■■□□□ 1.75
CCM2-216ENST00000488727 SPATA31A7Q8IWB4 1347 aa25.98■■□□□ 1.75
CCM2-216ENST00000488727 EIF4A2Q14240 407 aaKnown RBP25.97■■□□□ 1.75
CCM2-216ENST00000488727 TOM1L2Q6ZVM7 507 aa25.97■■□□□ 1.75
CCM2-216ENST00000488727 SPATA31A1Q5TZJ5 1347 aa25.97■■□□□ 1.75
CCM2-216ENST00000488727 CCDC9Q9Y3X0 531 aaKnown RBP25.97■■□□□ 1.75
CCM2-216ENST00000488727 GJD4Q96KN9 370 aaPredicted RBP25.96■■□□□ 1.75
CCM2-216ENST00000488727 NLRP2Q9NX02 1062 aa25.95■■□□□ 1.74
CCM2-216ENST00000488727 USP35Q9P2H5 1018 aa25.95■■□□□ 1.74
CCM2-216ENST00000488727 NBPF6Q5VWK0 638 aa25.94■■□□□ 1.74
CCM2-216ENST00000488727 NBPF4Q96M43 638 aa25.94■■□□□ 1.74
CCM2-216ENST00000488727 RGPD1P0DJD0 1748 aa25.93■■□□□ 1.74
CCM2-216ENST00000488727 CARD10Q9BWT7 1032 aa25.93■■□□□ 1.74
CCM2-216ENST00000488727 WNK3Q9BYP7 1800 aa25.93■■□□□ 1.74
CCM2-216ENST00000488727 IL13P35225 146 aa25.92■■□□□ 1.74
CCM2-216ENST00000488727 EYA1Q99502 592 aa25.91■■□□□ 1.74
CCM2-216ENST00000488727 DIAPH1O60610 1272 aaKnown RBP25.9■■□□□ 1.74
CCM2-216ENST00000488727 RBM6P78332 1123 aaKnown RBP25.9■■□□□ 1.74
CCM2-216ENST00000488727 CFAP53Q96M91 514 aa25.9■■□□□ 1.74
CCM2-216ENST00000488727 TCP11L2Q8N4U5 519 aa25.89■■□□□ 1.74
CCM2-216ENST00000488727 USHBP1Q8N6Y0 703 aa25.89■■□□□ 1.74
CCM2-216ENST00000488727 NCAPD2Q15021 1401 aa25.88■■□□□ 1.73
CCM2-216ENST00000488727 RXRBP28702 533 aa25.88■■□□□ 1.73
CCM2-216ENST00000488727 IGSF1Q8N6C5 1336 aa25.87■■□□□ 1.73
CCM2-216ENST00000488727 FAM98CQ17RN3 349 aaKnown RBP25.87■■□□□ 1.73
CCM2-216ENST00000488727 THSD7AQ9UPZ6 1657 aa25.87■■□□□ 1.73
CCM2-216ENST00000488727 THRAP3Q9Y2W1 955 aaKnown RBP25.86■■□□□ 1.73
CCM2-216ENST00000488727 BARGINQ6ZT62 677 aa25.85■■□□□ 1.73
CCM2-216ENST00000488727 DISP2A7MBM2 1401 aa25.85■■□□□ 1.73
CCM2-216ENST00000488727 SUPT16HQ9Y5B9 1047 aaKnown RBP25.85■■□□□ 1.73
CCM2-216ENST00000488727 CCDC184Q52MB2 194 aa25.84■■□□□ 1.73
CCM2-216ENST00000488727 PELP1Q8IZL8 1130 aaKnown RBP25.84■■□□□ 1.73
CCM2-216ENST00000488727 ONECUT3O60422 494 aaPredicted RBP25.83■■□□□ 1.73
CCM2-216ENST00000488727 PARP4Q9UKK3 1724 aaKnown RBP25.82■■□□□ 1.72
CCM2-216ENST00000488727 MEGF6O75095 1541 aa25.82■■□□□ 1.72
CCM2-216ENST00000488727 RGS12O14924 1447 aa25.82■■□□□ 1.72
CCM2-216ENST00000488727 AEBP1Q8IUX7 1158 aa25.81■■□□□ 1.72
CCM2-216ENST00000488727 LRRC37A3O60309 1634 aa25.81■■□□□ 1.72
CCM2-216ENST00000488727 U2SURPO15042 1029 aaKnown RBP25.8■■□□□ 1.72
CCM2-216ENST00000488727 BRWD3Q6RI45 1802 aa25.8■■□□□ 1.72
CCM2-216ENST00000488727 KDRP35968 1356 aa25.8■■□□□ 1.72
CCM2-216ENST00000488727 IL2RBP14784 551 aa25.79■■□□□ 1.72
CCM2-216ENST00000488727 SULT6B1Q6IMI4 303 aa25.78■■□□□ 1.72
CCM2-216ENST00000488727 NUDCQ9Y266 331 aa25.78■■□□□ 1.72
CCM2-216ENST00000488727 HMOX1P09601 288 aa25.77■■□□□ 1.72
CCM2-216ENST00000488727 SEPT12Q8IYM1 358 aa25.77■■□□□ 1.72
CCM2-216ENST00000488727 A0A0G2JS52 829 aa25.77■■□□□ 1.72
CCM2-216ENST00000488727 MYT1Q01538 1121 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms