RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 RGPD1P0DJD0 1748 aa17.44■□□□□ 0.38
HDAC6-229ENST00000486665 LRP5O75197 1615 aa17.43■□□□□ 0.38
HDAC6-229ENST00000486665 PSDA5PKW4 1024 aaPredicted RBP17.43■□□□□ 0.38
HDAC6-229ENST00000486665 NPC1L1Q9UHC9 1359 aa17.42■□□□□ 0.38
HDAC6-229ENST00000486665 NLRP6P59044 892 aa17.42■□□□□ 0.38
HDAC6-229ENST00000486665 USP31Q70CQ4 1352 aa17.41■□□□□ 0.38
HDAC6-229ENST00000486665 KIAA0232Q92628 1395 aa17.41■□□□□ 0.38
HDAC6-229ENST00000486665 CHRNA2Q15822 529 aa17.41■□□□□ 0.38
HDAC6-229ENST00000486665 EN1Q05925 392 aaPredicted RBP17.4■□□□□ 0.38
HDAC6-229ENST00000486665 MORC1Q86VD1 984 aa17.4■□□□□ 0.38
HDAC6-229ENST00000486665 PRDM11Q9NQV5 511 aa17.4■□□□□ 0.38
HDAC6-229ENST00000486665 PIK3C2AO00443 1686 aa17.39■□□□□ 0.37
HDAC6-229ENST00000486665 FBLN1P23142 703 aa17.39■□□□□ 0.37
HDAC6-229ENST00000486665 COG3Q96JB2 828 aa17.39■□□□□ 0.37
HDAC6-229ENST00000486665 NSD2O96028 1365 aa17.39■□□□□ 0.37
HDAC6-229ENST00000486665 BAG6P46379 1132 aa17.38■□□□□ 0.37
HDAC6-229ENST00000486665 NLRP13Q86W25 1043 aa17.38■□□□□ 0.37
HDAC6-229ENST00000486665 PRKRIP1Q9H875 184 aaPredicted RBP17.38■□□□□ 0.37
HDAC6-229ENST00000486665 OVOS2A0A0J9YW53 1432 aa17.38■□□□□ 0.37
HDAC6-229ENST00000486665 OVOS2Q6IE36 1432 aa17.38■□□□□ 0.37
HDAC6-229ENST00000486665 TNNT2P45379 298 aaPredicted RBP17.37■□□□□ 0.37
HDAC6-229ENST00000486665 ZC3H6P61129 1189 aaKnown RBP17.37■□□□□ 0.37
HDAC6-229ENST00000486665 SPATA31A1Q5TZJ5 1347 aa17.37■□□□□ 0.37
HDAC6-229ENST00000486665 KIF20BQ96Q89 1820 aa17.36■□□□□ 0.37
HDAC6-229ENST00000486665 ANP32CO43423 234 aa17.36■□□□□ 0.37
HDAC6-229ENST00000486665 STRN4Q9NRL3 753 aa17.36■□□□□ 0.37
HDAC6-229ENST00000486665 PARD3Q8TEW0 1356 aa17.36■□□□□ 0.37
HDAC6-229ENST00000486665 SOX12O15370 315 aa17.35■□□□□ 0.37
HDAC6-229ENST00000486665 RALBP1Q15311 655 aa17.35■□□□□ 0.37
HDAC6-229ENST00000486665 USP19O94966 1318 aa17.35■□□□□ 0.37
HDAC6-229ENST00000486665 LMO7Q8WWI1 1683 aa17.35■□□□□ 0.37
HDAC6-229ENST00000486665 CAMTA1Q9Y6Y1 1673 aa17.35■□□□□ 0.37
HDAC6-229ENST00000486665 DISP2A7MBM2 1401 aa17.34■□□□□ 0.37
HDAC6-229ENST00000486665 GCP02774 474 aa17.33■□□□□ 0.36
HDAC6-229ENST00000486665 EZH2Q15910 746 aaKnown RBP17.33■□□□□ 0.36
HDAC6-229ENST00000486665 PPP2R1AP30153 589 aa17.32■□□□□ 0.36
HDAC6-229ENST00000486665 R3HDM1Q15032 1099 aaKnown RBP17.32■□□□□ 0.36
HDAC6-229ENST00000486665 MIER1Q8N108 512 aa17.32■□□□□ 0.36
HDAC6-229ENST00000486665 USP35Q9P2H5 1018 aa17.32■□□□□ 0.36
HDAC6-229ENST00000486665 TRIM37O94972 964 aa17.31■□□□□ 0.36
HDAC6-229ENST00000486665 SLIT3O75094 1523 aa17.31■□□□□ 0.36
HDAC6-229ENST00000486665 ANKRD26Q9UPS8 1709 aa17.3■□□□□ 0.36
HDAC6-229ENST00000486665 USP54Q70EL1 1684 aa17.3■□□□□ 0.36
HDAC6-229ENST00000486665 RRS1Q15050 365 aaKnown RBP17.3■□□□□ 0.36
HDAC6-229ENST00000486665 LARP1Q6PKG0 1096 aaKnown RBP17.3■□□□□ 0.36
HDAC6-229ENST00000486665 KCNH5Q8NCM2 988 aa17.3■□□□□ 0.36
HDAC6-229ENST00000486665 CAMKK2Q96RR4 588 aa17.3■□□□□ 0.36
HDAC6-229ENST00000486665 RREB1Q92766 1687 aa17.29■□□□□ 0.36
HDAC6-229ENST00000486665 POLKQ9UBT6 870 aa17.29■□□□□ 0.36
HDAC6-229ENST00000486665 AATKQ6ZMQ8 1374 aa17.28■□□□□ 0.36
HDAC6-229ENST00000486665 MYBBP1AQ9BQG0 1328 aaKnown RBP17.28■□□□□ 0.36
HDAC6-229ENST00000486665 NUP188Q5SRE5 1749 aa17.28■□□□□ 0.36
HDAC6-229ENST00000486665 EMILIN1Q9Y6C2 1016 aa17.28■□□□□ 0.36
HDAC6-229ENST00000486665 CPDO75976 1380 aa17.28■□□□□ 0.36
HDAC6-229ENST00000486665 NFAT5O94916 1531 aa17.27■□□□□ 0.36
HDAC6-229ENST00000486665 MTHFSP49914 203 aa17.27■□□□□ 0.36
HDAC6-229ENST00000486665 ARHGEF25Q86VW2 580 aa17.27■□□□□ 0.36
HDAC6-229ENST00000486665 MAP3K19Q56UN5 1328 aa17.26■□□□□ 0.35
HDAC6-229ENST00000486665 FAM196AQ6ZSG2 479 aa17.26■□□□□ 0.35
HDAC6-229ENST00000486665 BARGINQ6ZT62 677 aa17.26■□□□□ 0.35
HDAC6-229ENST00000486665 PARP4Q9UKK3 1724 aaKnown RBP17.25■□□□□ 0.35
HDAC6-229ENST00000486665 ZBTB7CA1YPR0 619 aa17.25■□□□□ 0.35
HDAC6-229ENST00000486665 EVA1CP58658 441 aa17.25■□□□□ 0.35
HDAC6-229ENST00000486665 CCDC184Q52MB2 194 aa17.25■□□□□ 0.35
HDAC6-229ENST00000486665 COL5A2P05997 1499 aaPredicted RBP17.24■□□□□ 0.35
HDAC6-229ENST00000486665 PPM1GO15355 546 aaPredicted RBP17.24■□□□□ 0.35
HDAC6-229ENST00000486665 APBA3O96018 575 aa17.24■□□□□ 0.35
HDAC6-229ENST00000486665 PEAK1Q9H792 1746 aa17.23■□□□□ 0.35
HDAC6-229ENST00000486665 COL18A1P39060 1754 aa17.23■□□□□ 0.35
HDAC6-229ENST00000486665 AMPHP49418 695 aa17.22■□□□□ 0.35
HDAC6-229ENST00000486665 TCP11L2Q8N4U5 519 aa17.22■□□□□ 0.35
HDAC6-229ENST00000486665 HOXC9P31274 260 aa17.21■□□□□ 0.35
HDAC6-229ENST00000486665 PDE3BQ13370 1112 aa17.21■□□□□ 0.35
HDAC6-229ENST00000486665 HSP90AB2PQ58FF8 381 aa17.21■□□□□ 0.35
HDAC6-229ENST00000486665 IP6K1Q92551 441 aa17.21■□□□□ 0.35
HDAC6-229ENST00000486665 AXIN2Q9Y2T1 843 aa17.21■□□□□ 0.35
HDAC6-229ENST00000486665 SBF2Q86WG5 1849 aa17.21■□□□□ 0.35
HDAC6-229ENST00000486665 LRRC37A3O60309 1634 aa17.21■□□□□ 0.35
HDAC6-229ENST00000486665 SMG6Q86US8 1419 aaKnown RBP17.21■□□□□ 0.34
HDAC6-229ENST00000486665 MAP2P11137 1827 aaKnown RBP17.2■□□□□ 0.34
HDAC6-229ENST00000486665 WNK3Q9BYP7 1800 aa17.2■□□□□ 0.34
HDAC6-229ENST00000486665 RGPD5Q99666 1765 aa17.19■□□□□ 0.34
HDAC6-229ENST00000486665 CCER2I3L3R5 266 aa17.18■□□□□ 0.34
HDAC6-229ENST00000486665 CRB1P82279 1406 aa17.18■□□□□ 0.34
HDAC6-229ENST00000486665 INSRP06213 1382 aa17.17■□□□□ 0.34
HDAC6-229ENST00000486665 FLT4P35916 1363 aa17.17■□□□□ 0.34
HDAC6-229ENST00000486665 PTF1AQ7RTS3 328 aa17.17■□□□□ 0.34
HDAC6-229ENST00000486665 KIF24Q5T7B8 1368 aa17.16■□□□□ 0.34
HDAC6-229ENST00000486665 LTV1Q96GA3 475 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-229ENST00000486665 CFAP53Q96M91 514 aa17.16■□□□□ 0.34
HDAC6-229ENST00000486665 MRS2Q9HD23 443 aa17.16■□□□□ 0.34
HDAC6-229ENST00000486665 THRAP3Q9Y2W1 955 aaKnown RBP17.16■□□□□ 0.34
HDAC6-229ENST00000486665 RTL1A6NKG5 1358 aa17.15■□□□□ 0.34
HDAC6-229ENST00000486665 LTN1O94822 1766 aa17.15■□□□□ 0.34
HDAC6-229ENST00000486665 IL13P35225 146 aa17.15■□□□□ 0.34
HDAC6-229ENST00000486665 EIF4A2Q14240 407 aaKnown RBP17.15■□□□□ 0.34
HDAC6-229ENST00000486665 COL3A1P02461 1466 aaPredicted RBP17.15■□□□□ 0.34
HDAC6-229ENST00000486665 DIAPH1O60610 1272 aaKnown RBP17.14■□□□□ 0.33
HDAC6-229ENST00000486665 ANKRD24Q8TF21 1146 aa17.13■□□□□ 0.33
HDAC6-229ENST00000486665 OVOS2A0A0G2JMS6 1433 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms