RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 PCDHGA10Q9Y5H3 936 aa10.32□□□□□ -0.76
HDAC3-209ENST00000486618 AHDC1Q5TGY3 1603 aaPredicted RBP10.32□□□□□ -0.76
HDAC3-209ENST00000486618 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.31□□□□□ -0.76
HDAC3-209ENST00000486618 NUTM2BA6NNL0 878 aaPredicted RBP10.31□□□□□ -0.76
HDAC3-209ENST00000486618 NUTM2EB1AL46 878 aaPredicted RBP10.31□□□□□ -0.76
HDAC3-209ENST00000486618 TK2O00142 265 aa10.31□□□□□ -0.76
HDAC3-209ENST00000486618 NUTM2AQ8IVF1 878 aaPredicted RBP10.31□□□□□ -0.76
HDAC3-209ENST00000486618 PTPREP23469 700 aa10.3□□□□□ -0.76
HDAC3-209ENST00000486618 GCC2Q8IWJ2 1684 aa10.3□□□□□ -0.76
HDAC3-209ENST00000486618 DIP2AQ14689 1571 aa10.3□□□□□ -0.76
HDAC3-209ENST00000486618 TMEM131LA2VDJ0 1609 aa10.29□□□□□ -0.76
HDAC3-209ENST00000486618 LOC105371045A0A1W2PR82 267 aa10.29□□□□□ -0.76
HDAC3-209ENST00000486618 PHF14O94880 888 aa10.29□□□□□ -0.76
HDAC3-209ENST00000486618 BRINP3Q76B58 766 aa10.29□□□□□ -0.76
HDAC3-209ENST00000486618 VSIG10Q8N0Z9 540 aa10.29□□□□□ -0.76
HDAC3-209ENST00000486618 LRRC59Q96AG4 307 aaKnown RBP10.29□□□□□ -0.76
HDAC3-209ENST00000486618 AMOTL2Q9Y2J4 779 aa10.29□□□□□ -0.76
HDAC3-209ENST00000486618 ANKRD50Q9ULJ7 1429 aa10.29□□□□□ -0.76
HDAC3-209ENST00000486618 AFF2P51816 1311 aa10.29□□□□□ -0.76
HDAC3-209ENST00000486618 ADGRL2O95490 1459 aa10.29□□□□□ -0.76
HDAC3-209ENST00000486618 ADAMTS13Q76LX8 1427 aa10.28□□□□□ -0.76
HDAC3-209ENST00000486618 HRO43593 1189 aa10.28□□□□□ -0.76
HDAC3-209ENST00000486618 RBM6P78332 1123 aaKnown RBP10.28□□□□□ -0.76
HDAC3-209ENST00000486618 PDIA6Q15084 440 aa10.28□□□□□ -0.76
HDAC3-209ENST00000486618 DCCP43146 1447 aa10.27□□□□□ -0.77
HDAC3-209ENST00000486618 NUTM2DQ5VT03 806 aaPredicted RBP10.27□□□□□ -0.77
HDAC3-209ENST00000486618 ARIH1Q9Y4X5 557 aaPredicted RBP10.27□□□□□ -0.77
HDAC3-209ENST00000486618 TRPM2O94759 1503 aa10.27□□□□□ -0.77
HDAC3-209ENST00000486618 SETD5Q9C0A6 1442 aa10.26□□□□□ -0.77
HDAC3-209ENST00000486618 FAM50AQ14320 339 aaKnown RBP10.26□□□□□ -0.77
HDAC3-209ENST00000486618 TYW1BQ6NUM6 668 aa10.26□□□□□ -0.77
HDAC3-209ENST00000486618 FBXW7Q969H0 707 aa10.26□□□□□ -0.77
HDAC3-209ENST00000486618 NGLY1Q96IV0 654 aa10.26□□□□□ -0.77
HDAC3-209ENST00000486618 QTRT2Q9H974 415 aaKnown RBP10.26□□□□□ -0.77
HDAC3-209ENST00000486618 TMEM132AQ24JP5 1023 aa10.25□□□□□ -0.77
HDAC3-209ENST00000486618 DDX12PQ92771 950 aa10.25□□□□□ -0.77
HDAC3-209ENST00000486618 C8orf37Q96NL8 207 aa10.25□□□□□ -0.77
HDAC3-209ENST00000486618 VPS9D1Q9Y2B5 631 aa10.25□□□□□ -0.77
HDAC3-209ENST00000486618 ZBED2Q9BTP6 218 aa10.24□□□□□ -0.77
HDAC3-209ENST00000486618 ASXL1Q8IXJ9 1541 aa10.23□□□□□ -0.77
HDAC3-209ENST00000486618 SPDYE16A6NNV3 312 aaPredicted RBP10.23□□□□□ -0.77
HDAC3-209ENST00000486618 EPAS1Q99814 870 aa10.23□□□□□ -0.77
HDAC3-209ENST00000486618 SLC4A5Q9BY07 1137 aa10.23□□□□□ -0.77
HDAC3-209ENST00000486618 RGS12O14924 1447 aa10.22□□□□□ -0.77
HDAC3-209ENST00000486618 MST1RQ04912 1400 aa10.22□□□□□ -0.77
HDAC3-209ENST00000486618 PTPRUQ92729 1446 aa10.22□□□□□ -0.77
HDAC3-209ENST00000486618 NHSL1Q5SYE7 1610 aa10.22□□□□□ -0.77
HDAC3-209ENST00000486618 E9PCH4 1651 aa10.22□□□□□ -0.77
HDAC3-209ENST00000486618 PPP1R3GB7ZBB8 358 aa10.21□□□□□ -0.77
HDAC3-209ENST00000486618 ATAD2Q6PL18 1390 aa10.21□□□□□ -0.78
HDAC3-209ENST00000486618 PNPLA6Q8IY17 1366 aa10.21□□□□□ -0.78
HDAC3-209ENST00000486618 UNC13BO14795 1591 aa10.21□□□□□ -0.78
HDAC3-209ENST00000486618 COL9A1P20849 921 aa10.2□□□□□ -0.78
HDAC3-209ENST00000486618 XRN1Q8IZH2 1706 aaKnown RBP10.19□□□□□ -0.78
HDAC3-209ENST00000486618 ADAMTS2O95450 1211 aa10.19□□□□□ -0.78
HDAC3-209ENST00000486618 NBR1Q14596 966 aa10.19□□□□□ -0.78
HDAC3-209ENST00000486618 ZNF326Q5BKZ1 582 aaKnown RBP10.19□□□□□ -0.78
HDAC3-209ENST00000486618 USP21Q9UK80 565 aa10.19□□□□□ -0.78
HDAC3-209ENST00000486618 TRPC5Q9UL62 973 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-209ENST00000486618 ADGRL3Q9HAR2 1447 aa10.18□□□□□ -0.78
HDAC3-209ENST00000486618 NUP155O75694 1391 aa10.18□□□□□ -0.78
HDAC3-209ENST00000486618 CCDC125Q86Z20 511 aa10.18□□□□□ -0.78
HDAC3-209ENST00000486618 DDX17Q92841 729 aaKnown RBP10.18□□□□□ -0.78
HDAC3-209ENST00000486618 IQGAP3Q86VI3 1631 aa10.18□□□□□ -0.78
HDAC3-209ENST00000486618 SETBP1Q9Y6X0 1596 aa10.18□□□□□ -0.78
HDAC3-209ENST00000486618 BHMG1C9JSJ3 638 aaPredicted RBP10.17□□□□□ -0.78
HDAC3-209ENST00000486618 C6orf132Q5T0Z8 1188 aa10.17□□□□□ -0.78
HDAC3-209ENST00000486618 STAC3Q96MF2 364 aa10.17□□□□□ -0.78
HDAC3-209ENST00000486618 METP08581 1390 aa10.16□□□□□ -0.78
HDAC3-209ENST00000486618 ROCK1Q13464 1354 aa10.16□□□□□ -0.78
HDAC3-209ENST00000486618 NRXN3Q9Y4C0 1643 aa10.16□□□□□ -0.78
HDAC3-209ENST00000486618 EN1Q05925 392 aaPredicted RBP10.16□□□□□ -0.78
HDAC3-209ENST00000486618 PROX2Q3B8N5 592 aa10.16□□□□□ -0.78
HDAC3-209ENST00000486618 KCNV2Q8TDN2 545 aa10.16□□□□□ -0.78
HDAC3-209ENST00000486618 PTCH1Q13635 1447 aa10.16□□□□□ -0.78
HDAC3-209ENST00000486618 SOS2Q07890 1332 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-209ENST00000486618 FNBP4Q8N3X1 1017 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-209ENST00000486618 C1orf167Q5SNV9 1468 aa10.15□□□□□ -0.78
HDAC3-209ENST00000486618 GRXCR2A6NFK2 248 aa10.13□□□□□ -0.79
HDAC3-209ENST00000486618 MAP3K7O43318 606 aa10.13□□□□□ -0.79
HDAC3-209ENST00000486618 TSR1Q2NL82 804 aaKnown RBP10.13□□□□□ -0.79
HDAC3-209ENST00000486618 KCTD12Q96CX2 325 aaKnown RBP10.13□□□□□ -0.79
HDAC3-209ENST00000486618 ORAI2Q96SN7 254 aa10.13□□□□□ -0.79
HDAC3-209ENST00000486618 LAMC1P11047 1609 aa10.13□□□□□ -0.79
HDAC3-209ENST00000486618 SPHKAPQ2M3C7 1700 aa10.13□□□□□ -0.79
HDAC3-209ENST00000486618 NALCNQ8IZF0 1738 aa10.13□□□□□ -0.79
HDAC3-209ENST00000486618 PRIM1P49642 420 aaKnown RBP10.12□□□□□ -0.79
HDAC3-209ENST00000486618 ARHGEF1Q92888 912 aaKnown RBP10.12□□□□□ -0.79
HDAC3-209ENST00000486618 ATRNO75882 1429 aa10.12□□□□□ -0.79
HDAC3-209ENST00000486618 MRPL50Q8N5N7 158 aaKnown RBP10.11□□□□□ -0.79
HDAC3-209ENST00000486618 NBPF3Q9H094 633 aa10.11□□□□□ -0.79
HDAC3-209ENST00000486618 HCSTQ9UBK5 93 aa10.11□□□□□ -0.79
HDAC3-209ENST00000486618 RABGEF1Q9UJ41 708 aa10.11□□□□□ -0.79
HDAC3-209ENST00000486618 NPHP3Q7Z494 1330 aa10.1□□□□□ -0.79
HDAC3-209ENST00000486618 GJD4Q96KN9 370 aaPredicted RBP10.1□□□□□ -0.79
HDAC3-209ENST00000486618 KIF1BO60333 1816 aa10.1□□□□□ -0.79
HDAC3-209ENST00000486618 COL22A1Q8NFW1 1626 aaPredicted RBP10.09□□□□□ -0.79
HDAC3-209ENST00000486618 OSBPP22059 807 aa10.09□□□□□ -0.79
HDAC3-209ENST00000486618 ITGAEP38570 1179 aa10.09□□□□□ -0.79
HDAC3-209ENST00000486618 HFM1A2PYH4 1435 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms