RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 CDCA8Q53HL2 280 aa18.03■□□□□ 0.48
CHMP3-208ENST00000486404 BLMP54132 1417 aaPredicted RBP18.02■□□□□ 0.48
CHMP3-208ENST00000486404 CRB1P82279 1406 aa18.02■□□□□ 0.48
CHMP3-208ENST00000486404 NME9Q86XW9 330 aa18.02■□□□□ 0.48
CHMP3-208ENST00000486404 USP31Q70CQ4 1352 aa18.02■□□□□ 0.47
CHMP3-208ENST00000486404 LARP1Q6PKG0 1096 aaKnown RBP18.01■□□□□ 0.47
CHMP3-208ENST00000486404 CCDC125Q86Z20 511 aa18.01■□□□□ 0.47
CHMP3-208ENST00000486404 ANKRD36BQ8N2N9 1353 aa18.01■□□□□ 0.47
CHMP3-208ENST00000486404 SF3B2Q13435 895 aaKnown RBP18■□□□□ 0.47
CHMP3-208ENST00000486404 OVOS2A0A0J9YW53 1432 aa17.99■□□□□ 0.47
CHMP3-208ENST00000486404 OVOS2Q6IE36 1432 aa17.99■□□□□ 0.47
CHMP3-208ENST00000486404 LRRC37A3O60309 1634 aa17.99■□□□□ 0.47
CHMP3-208ENST00000486404 TNS1Q9HBL0 1735 aaKnown RBP17.98■□□□□ 0.47
CHMP3-208ENST00000486404 TCP11L2Q8N4U5 519 aa17.98■□□□□ 0.47
CHMP3-208ENST00000486404 ZRANB1Q9UGI0 708 aa17.98■□□□□ 0.47
CHMP3-208ENST00000486404 FAM208AQ9UK61 1670 aaKnown RBP17.97■□□□□ 0.47
CHMP3-208ENST00000486404 CSB-PGBD3P0DP91 1061 aa17.97■□□□□ 0.47
CHMP3-208ENST00000486404 BARGINQ6ZT62 677 aa17.97■□□□□ 0.47
CHMP3-208ENST00000486404 TOM1L2Q6ZVM7 507 aa17.97■□□□□ 0.47
CHMP3-208ENST00000486404 ARHGEF25Q86VW2 580 aa17.96■□□□□ 0.47
CHMP3-208ENST00000486404 THRAP3Q9Y2W1 955 aaKnown RBP17.96■□□□□ 0.47
CHMP3-208ENST00000486404 WDR17Q8IZU2 1322 aa17.96■□□□□ 0.46
CHMP3-208ENST00000486404 COG3Q96JB2 828 aa17.94■□□□□ 0.46
CHMP3-208ENST00000486404 EIF4G2P78344 907 aaKnown RBP eCLIP17.93■□□□□ 0.46
CHMP3-208ENST00000486404 PDE3BQ13370 1112 aa17.93■□□□□ 0.46
CHMP3-208ENST00000486404 FAM182BQ5T319 152 aa17.92■□□□□ 0.46
CHMP3-208ENST00000486404 POLR3GLQ9BT43 218 aa17.92■□□□□ 0.46
CHMP3-208ENST00000486404 AXIN2Q9Y2T1 843 aa17.92■□□□□ 0.46
CHMP3-208ENST00000486404 CCDC7Q96M83 1385 aa17.9■□□□□ 0.46
CHMP3-208ENST00000486404 NSD3Q9BZ95 1437 aa17.89■□□□□ 0.46
CHMP3-208ENST00000486404 ANKRD26Q9UPS8 1709 aa17.89■□□□□ 0.46
CHMP3-208ENST00000486404 BAG6P46379 1132 aa17.89■□□□□ 0.45
CHMP3-208ENST00000486404 FAM196AQ6ZSG2 479 aa17.89■□□□□ 0.45
CHMP3-208ENST00000486404 PEAK1Q9H792 1746 aa17.88■□□□□ 0.45
CHMP3-208ENST00000486404 ERBB3P21860 1342 aa17.88■□□□□ 0.45
CHMP3-208ENST00000486404 SBF2Q86WG5 1849 aa17.88■□□□□ 0.45
CHMP3-208ENST00000486404 OVOS2A0A0G2JMS6 1433 aa17.88■□□□□ 0.45
CHMP3-208ENST00000486404 HSPA5P11021 654 aaKnown RBP17.87■□□□□ 0.45
CHMP3-208ENST00000486404 DEFB132Q7Z7B7 95 aa17.87■□□□□ 0.45
CHMP3-208ENST00000486404 CDCA7Q9BWT1 371 aaPredicted RBP17.87■□□□□ 0.45
CHMP3-208ENST00000486404 CARD10Q9BWT7 1032 aa17.87■□□□□ 0.45
CHMP3-208ENST00000486404 DDB1Q16531 1140 aa17.86■□□□□ 0.45
CHMP3-208ENST00000486404 NLRP2Q9NX02 1062 aa17.86■□□□□ 0.45
CHMP3-208ENST00000486404 RTL1A6NKG5 1358 aa17.86■□□□□ 0.45
CHMP3-208ENST00000486404 RGPD2P0DJD1 1756 aa17.86■□□□□ 0.45
CHMP3-208ENST00000486404 TNS2Q63HR2 1409 aa17.85■□□□□ 0.45
CHMP3-208ENST00000486404 ANKRD24Q8TF21 1146 aa17.85■□□□□ 0.45
CHMP3-208ENST00000486404 GGNBP2Q9H3C7 697 aa17.85■□□□□ 0.45
CHMP3-208ENST00000486404 DISP2A7MBM2 1401 aa17.84■□□□□ 0.45
CHMP3-208ENST00000486404 AMPHP49418 695 aa17.84■□□□□ 0.45
CHMP3-208ENST00000486404 RREB1Q92766 1687 aa17.83■□□□□ 0.45
CHMP3-208ENST00000486404 SMG6Q86US8 1419 aaKnown RBP17.83■□□□□ 0.45
CHMP3-208ENST00000486404 MAP3K19Q56UN5 1328 aa17.83■□□□□ 0.44
CHMP3-208ENST00000486404 C11orf95C9JLR9 678 aaPredicted RBP17.83■□□□□ 0.44
CHMP3-208ENST00000486404 TRIM37O94972 964 aa17.83■□□□□ 0.44
CHMP3-208ENST00000486404 RGPD3A6NKT7 1758 aaPredicted RBP17.83■□□□□ 0.44
CHMP3-208ENST00000486404 RGPD4Q7Z3J3 1758 aa17.83■□□□□ 0.44
CHMP3-208ENST00000486404 FYB1O15117 783 aa17.82■□□□□ 0.44
CHMP3-208ENST00000486404 IP6K1Q92551 441 aa17.82■□□□□ 0.44
CHMP3-208ENST00000486404 LTV1Q96GA3 475 aaPredicted RBP17.82■□□□□ 0.44
CHMP3-208ENST00000486404 CGNL1Q0VF96 1302 aa17.81■□□□□ 0.44
CHMP3-208ENST00000486404 PIAS4Q8N2W9 510 aaPredicted RBP17.8■□□□□ 0.44
CHMP3-208ENST00000486404 NUP188Q5SRE5 1749 aa17.8■□□□□ 0.44
CHMP3-208ENST00000486404 MAP2P11137 1827 aaKnown RBP17.79■□□□□ 0.44
CHMP3-208ENST00000486404 HOXC9P31274 260 aa17.79■□□□□ 0.44
CHMP3-208ENST00000486404 EN1Q05925 392 aaPredicted RBP17.79■□□□□ 0.44
CHMP3-208ENST00000486404 RRS1Q15050 365 aaKnown RBP17.79■□□□□ 0.44
CHMP3-208ENST00000486404 PARD3Q8TEW0 1356 aa17.79■□□□□ 0.44
CHMP3-208ENST00000486404 NHSQ6T4R5 1651 aa17.78■□□□□ 0.44
CHMP3-208ENST00000486404 APBA3O96018 575 aa17.78■□□□□ 0.44
CHMP3-208ENST00000486404 IL2RBP14784 551 aa17.78■□□□□ 0.44
CHMP3-208ENST00000486404 CARD14Q9BXL6 1004 aa17.78■□□□□ 0.44
CHMP3-208ENST00000486404 FLT4P35916 1363 aa17.78■□□□□ 0.44
CHMP3-208ENST00000486404 EXOC5O00471 708 aa17.77■□□□□ 0.44
CHMP3-208ENST00000486404 FBLN1P23142 703 aa17.76■□□□□ 0.43
CHMP3-208ENST00000486404 KAT6BQ8WYB5 2073 aa17.76■□□□□ 0.43
CHMP3-208ENST00000486404 KIF24Q5T7B8 1368 aa17.76■□□□□ 0.43
CHMP3-208ENST00000486404 SHANK3Q9BYB0 1731 aa17.75■□□□□ 0.43
CHMP3-208ENST00000486404 MARCH10Q8NA82 808 aaPredicted RBP17.74■□□□□ 0.43
CHMP3-208ENST00000486404 BCL9O00512 1426 aa17.73■□□□□ 0.43
CHMP3-208ENST00000486404 DOT1LQ8TEK3 1739 aa17.73■□□□□ 0.43
CHMP3-208ENST00000486404 EZH2Q15910 746 aaKnown RBP17.73■□□□□ 0.43
CHMP3-208ENST00000486404 NSD2O96028 1365 aa17.72■□□□□ 0.43
CHMP3-208ENST00000486404 INSRP06213 1382 aa17.72■□□□□ 0.43
CHMP3-208ENST00000486404 BTAF1O14981 1849 aa17.72■□□□□ 0.43
CHMP3-208ENST00000486404 PPM1GO15355 546 aaPredicted RBP17.71■□□□□ 0.43
CHMP3-208ENST00000486404 PANK3Q9H999 370 aa17.71■□□□□ 0.43
CHMP3-208ENST00000486404 MEGF6O75095 1541 aa17.71■□□□□ 0.43
CHMP3-208ENST00000486404 LRP5O75197 1615 aa17.7■□□□□ 0.42
CHMP3-208ENST00000486404 MSH5O43196 834 aa17.7■□□□□ 0.42
CHMP3-208ENST00000486404 CAMKK2Q96RR4 588 aa17.7■□□□□ 0.42
CHMP3-208ENST00000486404 EMILIN1Q9Y6C2 1016 aa17.7■□□□□ 0.42
CHMP3-208ENST00000486404 PSDA5PKW4 1024 aaPredicted RBP17.69■□□□□ 0.42
CHMP3-208ENST00000486404 BCL11BQ9C0K0 894 aaPredicted RBP17.69■□□□□ 0.42
CHMP3-208ENST00000486404 KIF7Q2M1P5 1343 aa17.69■□□□□ 0.42
CHMP3-208ENST00000486404 HSP90AB2PQ58FF8 381 aa17.68■□□□□ 0.42
CHMP3-208ENST00000486404 PKD1L3Q7Z443 1732 aa17.67■□□□□ 0.42
CHMP3-208ENST00000486404 TNNT2P45379 298 aaPredicted RBP17.67■□□□□ 0.42
CHMP3-208ENST00000486404 USHBP1Q8N6Y0 703 aa17.67■□□□□ 0.42
CHMP3-208ENST00000486404 RAPGEF4Q8WZA2 1011 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms