RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PUS7Q96PZ0 661 aaKnown RBP11.07□□□□□ -0.64
USP40-216ENST00000485943 QTRT2Q9H974 415 aaKnown RBP11.07□□□□□ -0.64
USP40-216ENST00000485943 TTC21AQ8NDW8 1320 aa11.07□□□□□ -0.64
USP40-216ENST00000485943 MARF1Q9Y4F3 1742 aaKnown RBP11.06□□□□□ -0.64
USP40-216ENST00000485943 LRP6O75581 1613 aa11.06□□□□□ -0.64
USP40-216ENST00000485943 CHADLQ6NUI6 762 aa11.06□□□□□ -0.64
USP40-216ENST00000485943 KCNH5Q8NCM2 988 aa11.06□□□□□ -0.64
USP40-216ENST00000485943 SLC12A5Q9H2X9 1139 aa11.06□□□□□ -0.64
USP40-216ENST00000485943 USP6P35125 1406 aa11.06□□□□□ -0.64
USP40-216ENST00000485943 ZEB1P37275 1124 aaPredicted RBP11.05□□□□□ -0.64
USP40-216ENST00000485943 COG3Q96JB2 828 aa11.05□□□□□ -0.64
USP40-216ENST00000485943 TRPM3Q9HCF6 1732 aaPredicted RBP11.05□□□□□ -0.64
USP40-216ENST00000485943 STRN4Q9NRL3 753 aa11.05□□□□□ -0.64
USP40-216ENST00000485943 TTC21BQ7Z4L5 1316 aa11.05□□□□□ -0.64
USP40-216ENST00000485943 AKAP12Q02952 1782 aa11.04□□□□□ -0.64
USP40-216ENST00000485943 CSB-PGBD3P0DP91 1061 aa11.04□□□□□ -0.64
USP40-216ENST00000485943 TESK2Q96S53 571 aa11.04□□□□□ -0.64
USP40-216ENST00000485943 RBM6P78332 1123 aaKnown RBP11.03□□□□□ -0.64
USP40-216ENST00000485943 UNC5CLQ8IV45 518 aa11.03□□□□□ -0.64
USP40-216ENST00000485943 BTG4Q9NY30 223 aa11.03□□□□□ -0.64
USP40-216ENST00000485943 ALS2Q96Q42 1657 aa11.03□□□□□ -0.64
USP40-216ENST00000485943 EDC4Q6P2E9 1401 aaKnown RBP11.02□□□□□ -0.64
USP40-216ENST00000485943 NKX1-1Q15270 411 aaPredicted RBP11.02□□□□□ -0.65
USP40-216ENST00000485943 TSHZ2Q9NRE2 1034 aa11.02□□□□□ -0.65
USP40-216ENST00000485943 A0A1W2PP64 1363 aa11.02□□□□□ -0.65
USP40-216ENST00000485943 ANKRD36BQ8N2N9 1353 aa11.02□□□□□ -0.65
USP40-216ENST00000485943 GCP02774 474 aa11.01□□□□□ -0.65
USP40-216ENST00000485943 PYGBP11216 843 aa11.01□□□□□ -0.65
USP40-216ENST00000485943 CHRNA2Q15822 529 aa11.01□□□□□ -0.65
USP40-216ENST00000485943 USP35Q9P2H5 1018 aa11.01□□□□□ -0.65
USP40-216ENST00000485943 FARP1Q9Y4F1 1045 aaPredicted RBP11.01□□□□□ -0.65
USP40-216ENST00000485943 KIAA0232Q92628 1395 aa11.01□□□□□ -0.65
USP40-216ENST00000485943 MON2Q7Z3U7 1717 aa11.01□□□□□ -0.65
USP40-216ENST00000485943 COL14A1Q05707 1796 aaKnown RBP11□□□□□ -0.65
USP40-216ENST00000485943 PHRF1Q9P1Y6 1649 aaKnown RBP11□□□□□ -0.65
USP40-216ENST00000485943 POTEAQ6S8J7 498 aa11□□□□□ -0.65
USP40-216ENST00000485943 TAOK2Q9UL54 1235 aa11□□□□□ -0.65
USP40-216ENST00000485943 CGNL1Q0VF96 1302 aa11□□□□□ -0.65
USP40-216ENST00000485943 ABCA3Q99758 1704 aa11□□□□□ -0.65
USP40-216ENST00000485943 PLCH1Q4KWH8 1693 aa10.99□□□□□ -0.65
USP40-216ENST00000485943 FAM83GA6ND36 823 aa10.99□□□□□ -0.65
USP40-216ENST00000485943 AMPHP49418 695 aa10.99□□□□□ -0.65
USP40-216ENST00000485943 NME9Q86XW9 330 aa10.99□□□□□ -0.65
USP40-216ENST00000485943 FNBP4Q8N3X1 1017 aaPredicted RBP10.99□□□□□ -0.65
USP40-216ENST00000485943 SGIP1Q9BQI5 828 aa10.99□□□□□ -0.65
USP40-216ENST00000485943 KNSTRNQ9Y448 316 aa10.99□□□□□ -0.65
USP40-216ENST00000485943 NWD2Q9ULI1 1742 aa10.98□□□□□ -0.65
USP40-216ENST00000485943 CNGB1Q14028 1251 aaPredicted RBP10.98□□□□□ -0.65
USP40-216ENST00000485943 TOM1L2Q6ZVM7 507 aa10.98□□□□□ -0.65
USP40-216ENST00000485943 GJD4Q96KN9 370 aaPredicted RBP10.98□□□□□ -0.65
USP40-216ENST00000485943 CPSF1Q10570 1443 aaKnown RBP10.98□□□□□ -0.65
USP40-216ENST00000485943 PPM1GO15355 546 aaPredicted RBP10.97□□□□□ -0.65
USP40-216ENST00000485943 FXR2P51116 673 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP40-216ENST00000485943 SF3B2Q13435 895 aaKnown RBP10.97□□□□□ -0.65
USP40-216ENST00000485943 ILDR2Q71H61 639 aa10.97□□□□□ -0.65
USP40-216ENST00000485943 KIF20BQ96Q89 1820 aa10.96□□□□□ -0.65
USP40-216ENST00000485943 PIK3C2AO00443 1686 aa10.96□□□□□ -0.65
USP40-216ENST00000485943 NSD3Q9BZ95 1437 aa10.96□□□□□ -0.65
USP40-216ENST00000485943 USP19O94966 1318 aa10.96□□□□□ -0.65
USP40-216ENST00000485943 STK25O00506 426 aa10.96□□□□□ -0.65
USP40-216ENST00000485943 GGNBP2Q9H3C7 697 aa10.96□□□□□ -0.65
USP40-216ENST00000485943 RGS17Q9UGC6 210 aaPredicted RBP10.96□□□□□ -0.65
USP40-216ENST00000485943 NRKQ7Z2Y5 1582 aa10.95□□□□□ -0.66
USP40-216ENST00000485943 SMG6Q86US8 1419 aaKnown RBP10.95□□□□□ -0.66
USP40-216ENST00000485943 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.95□□□□□ -0.66
USP40-216ENST00000485943 PRKAR2AP13861 404 aaKnown RBP10.95□□□□□ -0.66
USP40-216ENST00000485943 VPS72Q15906 364 aa10.95□□□□□ -0.66
USP40-216ENST00000485943 ZFP91Q96JP5 570 aaPredicted RBP10.95□□□□□ -0.66
USP40-216ENST00000485943 PANK3Q9H999 370 aa10.95□□□□□ -0.66
USP40-216ENST00000485943 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.95□□□□□ -0.66
USP40-216ENST00000485943 SOCS7O14512 581 aa10.94□□□□□ -0.66
USP40-216ENST00000485943 TNNT2P45379 298 aaPredicted RBP10.94□□□□□ -0.66
USP40-216ENST00000485943 PDE3BQ13370 1112 aa10.94□□□□□ -0.66
USP40-216ENST00000485943 FAM98CQ17RN3 349 aaKnown RBP10.94□□□□□ -0.66
USP40-216ENST00000485943 LTV1Q96GA3 475 aaPredicted RBP10.94□□□□□ -0.66
USP40-216ENST00000485943 NLRP2Q9NX02 1062 aa10.94□□□□□ -0.66
USP40-216ENST00000485943 SLIT2O94813 1529 aa10.94□□□□□ -0.66
USP40-216ENST00000485943 ATRNO75882 1429 aa10.93□□□□□ -0.66
USP40-216ENST00000485943 CPDO75976 1380 aa10.93□□□□□ -0.66
USP40-216ENST00000485943 GTPBP6O43824 516 aaPredicted RBP10.93□□□□□ -0.66
USP40-216ENST00000485943 MORC1Q86VD1 984 aa10.93□□□□□ -0.66
USP40-216ENST00000485943 TSPYL2Q9H2G4 693 aaPredicted RBP10.93□□□□□ -0.66
USP40-216ENST00000485943 ZRANB1Q9UGI0 708 aa10.93□□□□□ -0.66
USP40-216ENST00000485943 LTN1O94822 1766 aa10.93□□□□□ -0.66
USP40-216ENST00000485943 TCP11L2Q8N4U5 519 aa10.92□□□□□ -0.66
USP40-216ENST00000485943 BCL9LQ86UU0 1499 aa10.92□□□□□ -0.66
USP40-216ENST00000485943 CD163L1Q9NR16 1453 aa10.92□□□□□ -0.66
USP40-216ENST00000485943 CRYBG1Q9Y4K1 1723 aa10.92□□□□□ -0.66
USP40-216ENST00000485943 AATKQ6ZMQ8 1374 aa10.91□□□□□ -0.66
USP40-216ENST00000485943 USP31Q70CQ4 1352 aa10.91□□□□□ -0.66
USP40-216ENST00000485943 KIF7Q2M1P5 1343 aa10.91□□□□□ -0.66
USP40-216ENST00000485943 SLIT3O75094 1523 aa10.91□□□□□ -0.66
USP40-216ENST00000485943 SEPT12Q8IYM1 358 aa10.91□□□□□ -0.66
USP40-216ENST00000485943 BCL11BQ9C0K0 894 aaPredicted RBP10.91□□□□□ -0.66
USP40-216ENST00000485943 CDK12Q9NYV4 1490 aaPredicted RBP10.91□□□□□ -0.66
USP40-216ENST00000485943 MYOM1P52179 1685 aa10.91□□□□□ -0.66
USP40-216ENST00000485943 SSH2Q76I76 1423 aa10.91□□□□□ -0.66
USP40-216ENST00000485943 FYB1O15117 783 aa10.9□□□□□ -0.66
USP40-216ENST00000485943 LARP1Q6PKG0 1096 aaKnown RBP10.9□□□□□ -0.66
USP40-216ENST00000485943 CHRDL2Q6WN34 429 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms