RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 SPATA31A3Q5VYP0 1347 aa7.38□□□□□ -1.23
CCDC39-205ENST00000485055 CCDC27Q2M243 656 aa7.37□□□□□ -1.23
CCDC39-205ENST00000485055 BARGINQ6ZT62 677 aa7.37□□□□□ -1.23
CCDC39-205ENST00000485055 FAM117AQ9C073 453 aa7.37□□□□□ -1.23
CCDC39-205ENST00000485055 GLI3P10071 1580 aa7.37□□□□□ -1.23
CCDC39-205ENST00000485055 PLEKHH1Q9ULM0 1364 aa7.37□□□□□ -1.23
CCDC39-205ENST00000485055 COL18A1P39060 1754 aa7.37□□□□□ -1.23
CCDC39-205ENST00000485055 BCL9LQ86UU0 1499 aa7.37□□□□□ -1.23
CCDC39-205ENST00000485055 SMARCA5O60264 1052 aaPredicted RBP7.37□□□□□ -1.23
CCDC39-205ENST00000485055 UNCXA6NJT0 531 aa7.36□□□□□ -1.23
CCDC39-205ENST00000485055 ONECUT3O60422 494 aaPredicted RBP7.36□□□□□ -1.23
CCDC39-205ENST00000485055 CLSTN1O94985 981 aa7.36□□□□□ -1.23
CCDC39-205ENST00000485055 SSH2Q76I76 1423 aa7.36□□□□□ -1.23
CCDC39-205ENST00000485055 POTEAQ6S8J7 498 aa7.36□□□□□ -1.23
CCDC39-205ENST00000485055 RALGAPBQ86X10 1494 aa7.35□□□□□ -1.23
CCDC39-205ENST00000485055 PARP4Q9UKK3 1724 aaKnown RBP7.35□□□□□ -1.23
CCDC39-205ENST00000485055 BRWD3Q6RI45 1802 aa7.35□□□□□ -1.23
CCDC39-205ENST00000485055 RGPD1P0DJD0 1748 aa7.35□□□□□ -1.23
CCDC39-205ENST00000485055 PLEKHG3A1L390 1219 aa7.35□□□□□ -1.23
CCDC39-205ENST00000485055 POLA2Q14181 598 aa7.35□□□□□ -1.23
CCDC39-205ENST00000485055 PSME1Q06323 249 aa7.34□□□□□ -1.23
CCDC39-205ENST00000485055 NUTM2DQ5VT03 806 aaPredicted RBP7.34□□□□□ -1.23
CCDC39-205ENST00000485055 CC2D2BQ6DHV5 1058 aa7.34□□□□□ -1.23
CCDC39-205ENST00000485055 RGS12O14924 1447 aa7.34□□□□□ -1.23
CCDC39-205ENST00000485055 CPDO75976 1380 aa7.33□□□□□ -1.24
CCDC39-205ENST00000485055 FAM208AQ9UK61 1670 aaKnown RBP7.33□□□□□ -1.24
CCDC39-205ENST00000485055 CFAP70Q5T0N1 1121 aa7.33□□□□□ -1.24
CCDC39-205ENST00000485055 PPARGC1BQ86YN6 1023 aaKnown RBP7.33□□□□□ -1.24
CCDC39-205ENST00000485055 USP19O94966 1318 aa7.32□□□□□ -1.24
CCDC39-205ENST00000485055 CLSPNQ9HAW4 1339 aa7.32□□□□□ -1.24
CCDC39-205ENST00000485055 WASLO00401 505 aaPredicted RBP7.32□□□□□ -1.24
CCDC39-205ENST00000485055 RBM6P78332 1123 aaKnown RBP7.32□□□□□ -1.24
CCDC39-205ENST00000485055 DISP2A7MBM2 1401 aa7.32□□□□□ -1.24
CCDC39-205ENST00000485055 PEAK1Q9H792 1746 aa7.32□□□□□ -1.24
CCDC39-205ENST00000485055 TNS1Q9HBL0 1735 aaKnown RBP7.32□□□□□ -1.24
CCDC39-205ENST00000485055 PIK3C2AO00443 1686 aa7.32□□□□□ -1.24
CCDC39-205ENST00000485055 PRDM10Q9NQV6 1147 aa7.32□□□□□ -1.24
CCDC39-205ENST00000485055 BCL9O00512 1426 aa7.32□□□□□ -1.24
CCDC39-205ENST00000485055 RREB1Q92766 1687 aa7.32□□□□□ -1.24
CCDC39-205ENST00000485055 ORAI2Q96SN7 254 aa7.31□□□□□ -1.24
CCDC39-205ENST00000485055 PHF8Q9UPP1 1060 aa7.31□□□□□ -1.24
CCDC39-205ENST00000485055 LRP5O75197 1615 aa7.31□□□□□ -1.24
CCDC39-205ENST00000485055 CPSF1Q10570 1443 aaKnown RBP7.31□□□□□ -1.24
CCDC39-205ENST00000485055 FLIIQ13045 1269 aa7.31□□□□□ -1.24
CCDC39-205ENST00000485055 AFF2P51816 1311 aa7.31□□□□□ -1.24
CCDC39-205ENST00000485055 PRR36Q9H6K5 1346 aa7.31□□□□□ -1.24
CCDC39-205ENST00000485055 A6NJR5 290 aa7.3□□□□□ -1.24
CCDC39-205ENST00000485055 WAPLQ7Z5K2 1190 aa7.3□□□□□ -1.24
CCDC39-205ENST00000485055 NINLQ9Y2I6 1382 aa7.3□□□□□ -1.24
CCDC39-205ENST00000485055 RXRBP28702 533 aa7.3□□□□□ -1.24
CCDC39-205ENST00000485055 RBM33Q96EV2 1170 aaKnown RBP7.3□□□□□ -1.24
CCDC39-205ENST00000485055 PRAM1Q96QH2 718 aa7.3□□□□□ -1.24
CCDC39-205ENST00000485055 TRPC5Q9UL62 973 aaPredicted RBP7.3□□□□□ -1.24
CCDC39-205ENST00000485055 USP31Q70CQ4 1352 aa7.29□□□□□ -1.24
CCDC39-205ENST00000485055 VPS72Q15906 364 aa7.29□□□□□ -1.24
CCDC39-205ENST00000485055 ANKRD26Q9UPS8 1709 aa7.29□□□□□ -1.24
CCDC39-205ENST00000485055 ATAD2Q6PL18 1390 aa7.29□□□□□ -1.24
CCDC39-205ENST00000485055 TESPA1A2RU30 521 aaPredicted RBP7.29□□□□□ -1.24
CCDC39-205ENST00000485055 ZEB1P37275 1124 aaPredicted RBP7.29□□□□□ -1.24
CCDC39-205ENST00000485055 KRT28Q7Z3Y7 464 aa7.29□□□□□ -1.24
CCDC39-205ENST00000485055 CAMTA1Q9Y6Y1 1673 aa7.28□□□□□ -1.24
CCDC39-205ENST00000485055 COL24A1Q17RW2 1714 aa7.28□□□□□ -1.24
CCDC39-205ENST00000485055 TMEM132EQ6IEE7 984 aa7.28□□□□□ -1.24
CCDC39-205ENST00000485055 CCDC97Q96F63 343 aaPredicted RBP7.28□□□□□ -1.24
CCDC39-205ENST00000485055 NGLY1Q96IV0 654 aa7.28□□□□□ -1.24
CCDC39-205ENST00000485055 NFAT5O94916 1531 aa7.28□□□□□ -1.24
CCDC39-205ENST00000485055 SBF2Q86WG5 1849 aa7.28□□□□□ -1.24
CCDC39-205ENST00000485055 AK7Q96M32 723 aa7.28□□□□□ -1.24
CCDC39-205ENST00000485055 ZNF219Q9P2Y4 722 aaPredicted RBP7.28□□□□□ -1.24
CCDC39-205ENST00000485055 QSER1Q2KHR3 1735 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 C11orf95C9JLR9 678 aaPredicted RBP7.27□□□□□ -1.25
CCDC39-205ENST00000485055 STK25O00506 426 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 RGL3Q3MIN7 710 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 UNC5CLQ8IV45 518 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 PLCD3Q8N3E9 789 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 DCAF11Q8TEB1 546 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 PLEKHG2Q9H7P9 1386 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 PDE4DQ08499 809 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 ESCO1Q5FWF5 840 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 UPF1Q92900 1129 aaKnown RBP eCLIP7.27□□□□□ -1.25
CCDC39-205ENST00000485055 POM121Q96HA1 1249 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 IGSF5Q9NSI5 407 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 USP6P35125 1406 aa7.27□□□□□ -1.25
CCDC39-205ENST00000485055 CD163L1Q9NR16 1453 aa7.26□□□□□ -1.25
CCDC39-205ENST00000485055 NAP1L5Q96NT1 182 aaPredicted RBP7.26□□□□□ -1.25
CCDC39-205ENST00000485055 CARNS1A5YM72 827 aa7.26□□□□□ -1.25
CCDC39-205ENST00000485055 CCDC61Q9Y6R9 512 aa7.26□□□□□ -1.25
CCDC39-205ENST00000485055 BRD1O95696 1058 aa7.25□□□□□ -1.25
CCDC39-205ENST00000485055 QTRT2Q9H974 415 aaKnown RBP7.25□□□□□ -1.25
CCDC39-205ENST00000485055 ARIH1Q9Y4X5 557 aaPredicted RBP7.25□□□□□ -1.25
CCDC39-205ENST00000485055 TTC21AQ8NDW8 1320 aa7.25□□□□□ -1.25
CCDC39-205ENST00000485055 CENPJQ9HC77 1338 aaPredicted RBP7.25□□□□□ -1.25
CCDC39-205ENST00000485055 NUDT16Q96DE0 195 aaKnown RBP7.25□□□□□ -1.25
CCDC39-205ENST00000485055 GJD4Q96KN9 370 aaPredicted RBP7.25□□□□□ -1.25
CCDC39-205ENST00000485055 BLMP54132 1417 aaPredicted RBP7.25□□□□□ -1.25
CCDC39-205ENST00000485055 LRRC37A3O60309 1634 aa7.24□□□□□ -1.25
CCDC39-205ENST00000485055 MYOM1P52179 1685 aa7.24□□□□□ -1.25
CCDC39-205ENST00000485055 AATKQ6ZMQ8 1374 aa7.24□□□□□ -1.25
CCDC39-205ENST00000485055 MEX3CQ5U5Q3 659 aaKnown RBP7.24□□□□□ -1.25
CCDC39-205ENST00000485055 PPIP5K1Q6PFW1 1433 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms