RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 PKD1L3Q7Z443 1732 aa13□□□□□ -0.33
LIMK1-205ENST00000483414 SLIT2O94813 1529 aa12.99□□□□□ -0.33
LIMK1-205ENST00000483414 GCP02774 474 aa12.99□□□□□ -0.33
LIMK1-205ENST00000483414 HSPA1LP34931 641 aa12.99□□□□□ -0.33
LIMK1-205ENST00000483414 NLRP6P59044 892 aa12.99□□□□□ -0.33
LIMK1-205ENST00000483414 NUTM2GQ5VZR2 741 aa12.99□□□□□ -0.33
LIMK1-205ENST00000483414 BLMP54132 1417 aaPredicted RBP12.99□□□□□ -0.33
LIMK1-205ENST00000483414 JCADQ9P266 1359 aa12.99□□□□□ -0.33
LIMK1-205ENST00000483414 MORC1Q86VD1 984 aa12.98□□□□□ -0.33
LIMK1-205ENST00000483414 NLRP13Q86W25 1043 aa12.98□□□□□ -0.33
LIMK1-205ENST00000483414 COL5A2P05997 1499 aaPredicted RBP12.98□□□□□ -0.33
LIMK1-205ENST00000483414 EMILIN1Q9Y6C2 1016 aa12.98□□□□□ -0.33
LIMK1-205ENST00000483414 PAK3O75914 559 aaPredicted RBP12.98□□□□□ -0.33
LIMK1-205ENST00000483414 DLG5Q8TDM6 1919 aa12.98□□□□□ -0.33
LIMK1-205ENST00000483414 CABLES1Q8TDN4 633 aa12.97□□□□□ -0.33
LIMK1-205ENST00000483414 RBM19Q9Y4C8 960 aaKnown RBP12.97□□□□□ -0.33
LIMK1-205ENST00000483414 FLT4P35916 1363 aa12.97□□□□□ -0.33
LIMK1-205ENST00000483414 ADAMTS7Q9UKP4 1686 aa12.97□□□□□ -0.33
LIMK1-205ENST00000483414 RRS1Q15050 365 aaKnown RBP12.97□□□□□ -0.33
LIMK1-205ENST00000483414 KIAA0232Q92628 1395 aa12.96□□□□□ -0.33
LIMK1-205ENST00000483414 FAM9BQ8IZU0 186 aa12.96□□□□□ -0.33
LIMK1-205ENST00000483414 KCNH5Q8NCM2 988 aa12.96□□□□□ -0.33
LIMK1-205ENST00000483414 SENP3-EIF4A1A0A087X0R7 540 aa12.95□□□□□ -0.34
LIMK1-205ENST00000483414 MTHFSP49914 203 aa12.95□□□□□ -0.34
LIMK1-205ENST00000483414 AXIN2Q9Y2T1 843 aa12.95□□□□□ -0.34
LIMK1-205ENST00000483414 PARP4Q9UKK3 1724 aaKnown RBP12.95□□□□□ -0.34
LIMK1-205ENST00000483414 HOXC9P31274 260 aa12.95□□□□□ -0.34
LIMK1-205ENST00000483414 FBXO41Q8TF61 875 aa12.95□□□□□ -0.34
LIMK1-205ENST00000483414 IL13P35225 146 aa12.94□□□□□ -0.34
LIMK1-205ENST00000483414 KDRP35968 1356 aa12.94□□□□□ -0.34
LIMK1-205ENST00000483414 PNISRQ8TF01 805 aaKnown RBP12.94□□□□□ -0.34
LIMK1-205ENST00000483414 THSD7AQ9UPZ6 1657 aa12.94□□□□□ -0.34
LIMK1-205ENST00000483414 BCL9LQ86UU0 1499 aa12.93□□□□□ -0.34
LIMK1-205ENST00000483414 SPATA31A6Q5VVP1 1343 aa12.93□□□□□ -0.34
LIMK1-205ENST00000483414 IP6K1Q92551 441 aa12.93□□□□□ -0.34
LIMK1-205ENST00000483414 LRRC37A3O60309 1634 aa12.93□□□□□ -0.34
LIMK1-205ENST00000483414 MSH5O43196 834 aa12.92□□□□□ -0.34
LIMK1-205ENST00000483414 TNNT2P45379 298 aaPredicted RBP12.92□□□□□ -0.34
LIMK1-205ENST00000483414 HSP90AB2PQ58FF8 381 aa12.92□□□□□ -0.34
LIMK1-205ENST00000483414 FAM83GA6ND36 823 aa12.91□□□□□ -0.34
LIMK1-205ENST00000483414 SIPA1L3O60292 1781 aaPredicted RBP12.91□□□□□ -0.34
LIMK1-205ENST00000483414 GLI3P10071 1580 aa12.91□□□□□ -0.34
LIMK1-205ENST00000483414 ERBB3P21860 1342 aa12.91□□□□□ -0.34
LIMK1-205ENST00000483414 EIF4A2Q14240 407 aaKnown RBP12.9□□□□□ -0.34
LIMK1-205ENST00000483414 IGSF1Q8N6C5 1336 aa12.9□□□□□ -0.34
LIMK1-205ENST00000483414 DISP2A7MBM2 1401 aa12.9□□□□□ -0.35
LIMK1-205ENST00000483414 PLEKHG2Q9H7P9 1386 aa12.89□□□□□ -0.35
LIMK1-205ENST00000483414 PLEKHF1Q96S99 279 aa12.88□□□□□ -0.35
LIMK1-205ENST00000483414 TOGARAM1Q9Y4F4 1720 aa12.88□□□□□ -0.35
LIMK1-205ENST00000483414 ZC3H6P61129 1189 aaKnown RBP12.87□□□□□ -0.35
LIMK1-205ENST00000483414 MEGF6O75095 1541 aa12.86□□□□□ -0.35
LIMK1-205ENST00000483414 FNBP4Q8N3X1 1017 aaPredicted RBP12.86□□□□□ -0.35
LIMK1-205ENST00000483414 SCN11AQ9UI33 1791 aa12.86□□□□□ -0.35
LIMK1-205ENST00000483414 LMOD2Q6P5Q4 547 aa12.86□□□□□ -0.35
LIMK1-205ENST00000483414 MRS2Q9HD23 443 aa12.86□□□□□ -0.35
LIMK1-205ENST00000483414 ATRNO75882 1429 aa12.85□□□□□ -0.35
LIMK1-205ENST00000483414 RSPH6AQ9H0K4 717 aa12.85□□□□□ -0.35
LIMK1-205ENST00000483414 SOX12O15370 315 aa12.85□□□□□ -0.35
LIMK1-205ENST00000483414 PRKCSHP14314 528 aaPredicted RBP12.85□□□□□ -0.35
LIMK1-205ENST00000483414 CRB1P82279 1406 aa12.85□□□□□ -0.35
LIMK1-205ENST00000483414 CHRNA2Q15822 529 aa12.84□□□□□ -0.35
LIMK1-205ENST00000483414 WDR17Q8IZU2 1322 aa12.84□□□□□ -0.35
LIMK1-205ENST00000483414 BRWD3Q6RI45 1802 aa12.84□□□□□ -0.35
LIMK1-205ENST00000483414 EYA1Q99502 592 aa12.84□□□□□ -0.35
LIMK1-205ENST00000483414 EP400Q96L91 3159 aa12.84□□□□□ -0.35
LIMK1-205ENST00000483414 NBPF6Q5VWK0 638 aa12.84□□□□□ -0.35
LIMK1-205ENST00000483414 NBPF4Q96M43 638 aa12.84□□□□□ -0.35
LIMK1-205ENST00000483414 ADAMTS8Q9UP79 889 aa12.84□□□□□ -0.35
LIMK1-205ENST00000483414 DIAPH1O60610 1272 aaKnown RBP12.83□□□□□ -0.36
LIMK1-205ENST00000483414 PAPPAQ13219 1627 aa12.83□□□□□ -0.36
LIMK1-205ENST00000483414 ANKRD24Q8TF21 1146 aa12.83□□□□□ -0.36
LIMK1-205ENST00000483414 OVOS2A0A0G2JMS6 1433 aa12.82□□□□□ -0.36
LIMK1-205ENST00000483414 ERICH6Q7L0X2 663 aa12.82□□□□□ -0.36
LIMK1-205ENST00000483414 AMPHP49418 695 aa12.81□□□□□ -0.36
LIMK1-205ENST00000483414 AEBP1Q8IUX7 1158 aa12.81□□□□□ -0.36
LIMK1-205ENST00000483414 SBF2Q86WG5 1849 aa12.81□□□□□ -0.36
LIMK1-205ENST00000483414 PHF23Q9BUL5 403 aaPredicted RBP12.81□□□□□ -0.36
LIMK1-205ENST00000483414 PRDM11Q9NQV5 511 aa12.81□□□□□ -0.36
LIMK1-205ENST00000483414 KDM3BQ7LBC6 1761 aa12.8□□□□□ -0.36
LIMK1-205ENST00000483414 BTG4Q9NY30 223 aa12.8□□□□□ -0.36
LIMK1-205ENST00000483414 ITGB4P16144 1822 aa12.8□□□□□ -0.36
LIMK1-205ENST00000483414 MRC1P22897 1456 aa12.79□□□□□ -0.36
LIMK1-205ENST00000483414 LARP1Q6PKG0 1096 aaKnown RBP12.79□□□□□ -0.36
LIMK1-205ENST00000483414 CFAP53Q96M91 514 aa12.79□□□□□ -0.36
LIMK1-205ENST00000483414 UBR2Q8IWV8 1755 aa12.79□□□□□ -0.36
LIMK1-205ENST00000483414 SPATA31A5Q5VU36 1347 aa12.79□□□□□ -0.36
LIMK1-205ENST00000483414 SPATA31A7Q8IWB4 1347 aa12.79□□□□□ -0.36
LIMK1-205ENST00000483414 ZNF521Q96K83 1311 aa12.79□□□□□ -0.36
LIMK1-205ENST00000483414 PPM1GO15355 546 aaPredicted RBP12.78□□□□□ -0.36
LIMK1-205ENST00000483414 SPATA31A1Q5TZJ5 1347 aa12.78□□□□□ -0.36
LIMK1-205ENST00000483414 FCHSD2O94868 740 aa12.78□□□□□ -0.36
LIMK1-205ENST00000483414 CARD10Q9BWT7 1032 aa12.78□□□□□ -0.36
LIMK1-205ENST00000483414 ADAMTS2O95450 1211 aa12.77□□□□□ -0.36
LIMK1-205ENST00000483414 NBR1Q14596 966 aa12.77□□□□□ -0.36
LIMK1-205ENST00000483414 RGS17Q9UGC6 210 aaPredicted RBP12.77□□□□□ -0.36
LIMK1-205ENST00000483414 DOT1LQ8TEK3 1739 aa12.77□□□□□ -0.36
LIMK1-205ENST00000483414 NCBP3Q53F19 620 aaKnown RBP12.77□□□□□ -0.37
LIMK1-205ENST00000483414 PHACTR3Q96KR7 559 aa12.77□□□□□ -0.37
LIMK1-205ENST00000483414 PLEKHG5O94827 1062 aa12.77□□□□□ -0.37
LIMK1-205ENST00000483414 UNC5CLQ8IV45 518 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms