RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 NBPF20Q3BBV1 942 aa12.32□□□□□ -0.44
USP40-213ENST00000483216 WASF2Q9Y6W5 498 aa12.32□□□□□ -0.44
USP40-213ENST00000483216 C14orf37Q86TY3 774 aa12.31□□□□□ -0.44
USP40-213ENST00000483216 KCTD15Q96SI1 283 aaPredicted RBP12.31□□□□□ -0.44
USP40-213ENST00000483216 TRAK2O60296 914 aa12.29□□□□□ -0.44
USP40-213ENST00000483216 DGAT1O75907 488 aa12.29□□□□□ -0.44
USP40-213ENST00000483216 FAM187AA6NFU0 413 aa12.28□□□□□ -0.44
USP40-213ENST00000483216 ESPNB1AK53 854 aa12.28□□□□□ -0.44
USP40-213ENST00000483216 FSHRP23945 695 aa12.27□□□□□ -0.45
USP40-213ENST00000483216 SEMA3FQ13275 785 aa12.27□□□□□ -0.45
USP40-213ENST00000483216 NNTQ13423 1086 aa12.27□□□□□ -0.45
USP40-213ENST00000483216 PKDCCQ504Y2 493 aa12.27□□□□□ -0.45
USP40-213ENST00000483216 POM121CA8CG34 1229 aa12.26□□□□□ -0.45
USP40-213ENST00000483216 SEPT12Q8IYM1 358 aa12.26□□□□□ -0.45
USP40-213ENST00000483216 ALG2Q9H553 416 aa12.26□□□□□ -0.45
USP40-213ENST00000483216 CEP126Q9P2H0 1117 aa12.26□□□□□ -0.45
USP40-213ENST00000483216 AVPP01185 164 aa12.25□□□□□ -0.45
USP40-213ENST00000483216 GIGYF1O75420 1035 aaPredicted RBP12.24□□□□□ -0.45
USP40-213ENST00000483216 NR3C2P08235 984 aa12.24□□□□□ -0.45
USP40-213ENST00000483216 INTS6LQ5JSJ4 861 aaKnown RBP12.24□□□□□ -0.45
USP40-213ENST00000483216 CCDC125Q86Z20 511 aa12.24□□□□□ -0.45
USP40-213ENST00000483216 HPS1Q92902 700 aa12.24□□□□□ -0.45
USP40-213ENST00000483216 RNF20Q5VTR2 975 aa12.23□□□□□ -0.45
USP40-213ENST00000483216 CCDC116Q8IYX3 515 aa12.23□□□□□ -0.45
USP40-213ENST00000483216 DHX9Q08211 1270 aaKnown RBP12.22□□□□□ -0.45
USP40-213ENST00000483216 HDGFL1Q5TGJ6 251 aa12.21□□□□□ -0.45
USP40-213ENST00000483216 ADAMTS19Q8TE59 1207 aa12.21□□□□□ -0.45
USP40-213ENST00000483216 KLF16Q9BXK1 252 aaPredicted RBP12.21□□□□□ -0.45
USP40-213ENST00000483216 PHTF2Q8N3S3 785 aa12.2□□□□□ -0.46
USP40-213ENST00000483216 EMILIN1Q9Y6C2 1016 aa12.2□□□□□ -0.46
USP40-213ENST00000483216 CTC1Q2NKJ3 1217 aa12.19□□□□□ -0.46
USP40-213ENST00000483216 PPP1R26Q5T8A7 1209 aaPredicted RBP12.19□□□□□ -0.46
USP40-213ENST00000483216 SMCPP49901 116 aaPredicted RBP12.18□□□□□ -0.46
USP40-213ENST00000483216 SLFNL1Q499Z3 407 aa12.18□□□□□ -0.46
USP40-213ENST00000483216 CRIPAKQ8N1N5 446 aa12.18□□□□□ -0.46
USP40-213ENST00000483216 GLMNQ92990 594 aa12.18□□□□□ -0.46
USP40-213ENST00000483216 ZNF777Q9ULD5 760 aaPredicted RBP12.18□□□□□ -0.46
USP40-213ENST00000483216 TIMELESSQ9UNS1 1208 aa12.18□□□□□ -0.46
USP40-213ENST00000483216 ERVH48-1M5A8F1 160 aa12.17□□□□□ -0.46
USP40-213ENST00000483216 WDR4P57081 412 aaKnown RBP12.17□□□□□ -0.46
USP40-213ENST00000483216 RAB15P59190 212 aa12.17□□□□□ -0.46
USP40-213ENST00000483216 Q6ZNB5 142 aa12.17□□□□□ -0.46
USP40-213ENST00000483216 PGPEP1Q9NXJ5 209 aa12.17□□□□□ -0.46
USP40-213ENST00000483216 TIMP2P16035 220 aa12.16□□□□□ -0.46
USP40-213ENST00000483216 MYT1Q01538 1121 aa12.16□□□□□ -0.46
USP40-213ENST00000483216 TRIM52Q96A61 297 aa12.16□□□□□ -0.46
USP40-213ENST00000483216 CHIC2Q9UKJ5 165 aa12.16□□□□□ -0.46
USP40-213ENST00000483216 ZIC2O95409 532 aaPredicted RBP12.15□□□□□ -0.46
USP40-213ENST00000483216 RNF135Q8IUD6 432 aa12.15□□□□□ -0.46
USP40-213ENST00000483216 ITPKCQ96DU7 683 aa12.15□□□□□ -0.46
USP40-213ENST00000483216 NFATC2IPQ8NCF5 419 aa12.14□□□□□ -0.47
USP40-213ENST00000483216 CALR3Q96L12 384 aaKnown RBP12.14□□□□□ -0.47
USP40-213ENST00000483216 CCDC85AQ96PX6 553 aaPredicted RBP12.14□□□□□ -0.47
USP40-213ENST00000483216 CAPN5O15484 640 aaPredicted RBP12.13□□□□□ -0.47
USP40-213ENST00000483216 TMPRSS4Q9NRS4 437 aa12.13□□□□□ -0.47
USP40-213ENST00000483216 AXIN1O15169 862 aa12.12□□□□□ -0.47
USP40-213ENST00000483216 ZNF784Q8NCA9 323 aaPredicted RBP12.12□□□□□ -0.47
USP40-213ENST00000483216 ZFAND3Q9H8U3 227 aa12.12□□□□□ -0.47
USP40-213ENST00000483216 PIK3CDO00329 1044 aa12.11□□□□□ -0.47
USP40-213ENST00000483216 MAP7D1Q3KQU3 841 aa12.11□□□□□ -0.47
USP40-213ENST00000483216 UCN2Q96RP3 112 aa12.11□□□□□ -0.47
USP40-213ENST00000483216 AAASQ9NRG9 546 aa12.11□□□□□ -0.47
USP40-213ENST00000483216 PCDHB11Q9Y5F2 797 aa12.11□□□□□ -0.47
USP40-213ENST00000483216 TRAF7Q6Q0C0 670 aa12.1□□□□□ -0.47
USP40-213ENST00000483216 LILRA1O75019 489 aa12.09□□□□□ -0.47
USP40-213ENST00000483216 TSGA10IPQ3SY00 556 aa12.09□□□□□ -0.47
USP40-213ENST00000483216 Q6ZVU0 165 aa12.09□□□□□ -0.47
USP40-213ENST00000483216 PLPP7Q8NBV4 271 aa12.09□□□□□ -0.47
USP40-213ENST00000483216 DOLKQ9UPQ8 538 aa12.09□□□□□ -0.47
USP40-213ENST00000483216 LCE2BO14633 110 aa12.08□□□□□ -0.48
USP40-213ENST00000483216 ST8SIA5O15466 376 aa12.08□□□□□ -0.48
USP40-213ENST00000483216 ERVK-9P63128 1117 aa12.08□□□□□ -0.48
USP40-213ENST00000483216 SKIP12755 728 aa12.07□□□□□ -0.48
USP40-213ENST00000483216 CC2D2BQ6DHV5 1058 aa12.07□□□□□ -0.48
USP40-213ENST00000483216 CDCA7Q9BWT1 371 aaPredicted RBP12.07□□□□□ -0.48
USP40-213ENST00000483216 LZTS3O60299 673 aaPredicted RBP12.06□□□□□ -0.48
USP40-213ENST00000483216 TBC1D9Q6ZT07 1266 aa12.06□□□□□ -0.48
USP40-213ENST00000483216 MEIOBQ8N635 442 aa12.06□□□□□ -0.48
USP40-213ENST00000483216 CYLDQ9NQC7 956 aa12.06□□□□□ -0.48
USP40-213ENST00000483216 ATP9BO43861 1147 aa12.05□□□□□ -0.48
USP40-213ENST00000483216 ADD1P35611 737 aaKnown RBP12.05□□□□□ -0.48
USP40-213ENST00000483216 USP4Q13107 963 aa12.05□□□□□ -0.48
USP40-213ENST00000483216 CBLBQ13191 982 aa12.05□□□□□ -0.48
USP40-213ENST00000483216 SCTRP47872 440 aa12.04□□□□□ -0.48
USP40-213ENST00000483216 SIRT1Q96EB6 747 aa12.04□□□□□ -0.48
USP40-213ENST00000483216 PPP1R12CQ9BZL4 782 aa12.04□□□□□ -0.48
USP40-213ENST00000483216 ARID3CA6NKF2 412 aa12.03□□□□□ -0.48
USP40-213ENST00000483216 USP17L5A8MUK1 530 aa12.03□□□□□ -0.48
USP40-213ENST00000483216 MYCP01106 439 aaPredicted RBP12.03□□□□□ -0.48
USP40-213ENST00000483216 TFIP11Q9UBB9 837 aaKnown RBP12.03□□□□□ -0.48
USP40-213ENST00000483216 PALM3A6NDB9 673 aaPredicted RBP12.02□□□□□ -0.49
USP40-213ENST00000483216 ADH1AP07327 375 aa12.02□□□□□ -0.49
USP40-213ENST00000483216 PLEKHM2Q8IWE5 1019 aa12.02□□□□□ -0.49
USP40-213ENST00000483216 ESF1Q9H501 851 aaKnown RBP12.02□□□□□ -0.49
USP40-213ENST00000483216 DACH1Q9UI36 760 aa12.02□□□□□ -0.49
USP40-213ENST00000483216 OXLD1Q5BKU9 147 aa12.01□□□□□ -0.49
USP40-213ENST00000483216 MRPL14Q6P1L8 145 aaKnown RBP12.01□□□□□ -0.49
USP40-213ENST00000483216 TSEN34Q9BSV6 310 aaKnown RBP12.01□□□□□ -0.49
USP40-213ENST00000483216 OSBPL3Q9H4L5 887 aa12.01□□□□□ -0.49
USP40-213ENST00000483216 ATP13A2Q9NQ11 1180 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms