RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 NUP133Q8WUM0 1156 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 RAI14Q9P0K7 980 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 CCDC39Q9UFE4 941 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 ADAMTS8Q9UP79 889 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 CYP46A1Q9Y6A2 500 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 TRIM21P19474 475 aaKnown RBP14.75□□□□□ -0.05
PTPRE-208ENST00000479896 PPP2R1AP30153 589 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 LRRCC1Q9C099 1032 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 CABP1Q9NZU7 370 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 RUSC2Q8N2Y8 1516 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 BICDL1Q6ZP65 573 aa14.74□□□□□ -0.05
PTPRE-208ENST00000479896 ERLIN2O94905 339 aa14.74□□□□□ -0.05
PTPRE-208ENST00000479896 ZNF76P36508 570 aa14.74□□□□□ -0.05
PTPRE-208ENST00000479896 BRPF1P55201 1214 aaPredicted RBP14.74□□□□□ -0.05
PTPRE-208ENST00000479896 BTBD11A6QL63 1104 aa14.74□□□□□ -0.05
PTPRE-208ENST00000479896 CDKL5O76039 1030 aa14.74□□□□□ -0.05
PTPRE-208ENST00000479896 ZRSR2Q15696 482 aaKnown RBP14.74□□□□□ -0.05
PTPRE-208ENST00000479896 ZNF652Q9Y2D9 606 aa14.74□□□□□ -0.05
PTPRE-208ENST00000479896 STARD3NLO95772 234 aa14.74□□□□□ -0.05
PTPRE-208ENST00000479896 CASKIN1Q8WXD9 1431 aa14.74□□□□□ -0.05
PTPRE-208ENST00000479896 NEK4P51957 841 aa14.73□□□□□ -0.05
PTPRE-208ENST00000479896 RABEP1Q15276 862 aa14.73□□□□□ -0.05
PTPRE-208ENST00000479896 ANKRD18AQ8IVF6 992 aa14.73□□□□□ -0.05
PTPRE-208ENST00000479896 TDO2P48775 406 aa14.73□□□□□ -0.05
PTPRE-208ENST00000479896 AEBP1Q8IUX7 1158 aa14.73□□□□□ -0.05
PTPRE-208ENST00000479896 BMP2KQ9NSY1 1161 aaPredicted RBP14.73□□□□□ -0.05
PTPRE-208ENST00000479896 MATR3P43243 847 aaKnown RBP eCLIP14.73□□□□□ -0.05
PTPRE-208ENST00000479896 TANGO6Q9C0B7 1094 aa14.73□□□□□ -0.05
PTPRE-208ENST00000479896 FAM13BQ9NYF5 915 aa14.73□□□□□ -0.05
PTPRE-208ENST00000479896 UBAC1Q9BSL1 405 aa14.73□□□□□ -0.05
PTPRE-208ENST00000479896 TRIM5Q9C035 493 aa14.73□□□□□ -0.05
PTPRE-208ENST00000479896 NOB1Q9ULX3 412 aaKnown RBP14.73□□□□□ -0.05
PTPRE-208ENST00000479896 MBD3O95983 291 aa14.72□□□□□ -0.05
PTPRE-208ENST00000479896 FKBP4Q02790 459 aaKnown RBP eCLIP14.72□□□□□ -0.05
PTPRE-208ENST00000479896 CTNNA3Q9UI47 895 aa14.72□□□□□ -0.05
PTPRE-208ENST00000479896 DNAI2Q9GZS0 605 aa14.72□□□□□ -0.05
PTPRE-208ENST00000479896 CEP126Q9P2H0 1117 aa14.72□□□□□ -0.05
PTPRE-208ENST00000479896 RPGRIP1LQ68CZ1 1315 aa14.72□□□□□ -0.05
PTPRE-208ENST00000479896 DHX8Q14562 1220 aaKnown RBP14.71□□□□□ -0.05
PTPRE-208ENST00000479896 NEBLO76041 1014 aa14.71□□□□□ -0.05
PTPRE-208ENST00000479896 NOM1Q5C9Z4 860 aaKnown RBP14.71□□□□□ -0.05
PTPRE-208ENST00000479896 C1orf115Q9H7X2 142 aa14.71□□□□□ -0.05
PTPRE-208ENST00000479896 ZPR1O75312 459 aa14.71□□□□□ -0.05
PTPRE-208ENST00000479896 KCNH5Q8NCM2 988 aa14.71□□□□□ -0.05
PTPRE-208ENST00000479896 LRP2BPQ9P2M1 347 aa14.71□□□□□ -0.05
PTPRE-208ENST00000479896 LRRC9Q6ZRR7 1453 aa14.71□□□□□ -0.06
PTPRE-208ENST00000479896 ZNF287Q9HBT7 754 aa14.71□□□□□ -0.06
PTPRE-208ENST00000479896 DEF6Q9H4E7 631 aa14.7□□□□□ -0.06
PTPRE-208ENST00000479896 AACSQ86V21 672 aa14.7□□□□□ -0.06
PTPRE-208ENST00000479896 TNIP1Q15025 636 aa14.7□□□□□ -0.06
PTPRE-208ENST00000479896 NEFHP12036 1026 aa14.69□□□□□ -0.06
PTPRE-208ENST00000479896 CEBPZQ03701 1054 aaKnown RBP14.69□□□□□ -0.06
PTPRE-208ENST00000479896 FMNL2Q96PY5 1086 aa14.69□□□□□ -0.06
PTPRE-208ENST00000479896 TSPY26PQ9H489 355 aa14.69□□□□□ -0.06
PTPRE-208ENST00000479896 WASF1Q92558 559 aa14.69□□□□□ -0.06
PTPRE-208ENST00000479896 CT47B1P0C2W7 299 aaPredicted RBP14.69□□□□□ -0.06
PTPRE-208ENST00000479896 SLC26A8Q96RN1 970 aa14.69□□□□□ -0.06
PTPRE-208ENST00000479896 ATAD2Q6PL18 1390 aa14.69□□□□□ -0.06
PTPRE-208ENST00000479896 PPFIBP1Q86W92 1011 aa14.69□□□□□ -0.06
PTPRE-208ENST00000479896 CCDC191Q8NCU4 936 aa14.69□□□□□ -0.06
PTPRE-208ENST00000479896 STK3Q13188 491 aa14.69□□□□□ -0.06
PTPRE-208ENST00000479896 MRC2Q9UBG0 1479 aa14.68□□□□□ -0.06
PTPRE-208ENST00000479896 SERPINC1P01008 464 aa14.68□□□□□ -0.06
PTPRE-208ENST00000479896 C9orf84Q5VXU9 1444 aa14.68□□□□□ -0.06
PTPRE-208ENST00000479896 TMOD3Q9NYL9 352 aa14.68□□□□□ -0.06
PTPRE-208ENST00000479896 SSBP05455 408 aaKnown RBP eCLIP14.67□□□□□ -0.06
PTPRE-208ENST00000479896 SEPT7Q16181 437 aaKnown RBP14.67□□□□□ -0.06
PTPRE-208ENST00000479896 IFT140Q96RY7 1462 aa14.67□□□□□ -0.06
PTPRE-208ENST00000479896 SKIDA1Q1XH10 827 aa14.67□□□□□ -0.06
PTPRE-208ENST00000479896 KIF21BO75037 1637 aa14.67□□□□□ -0.06
PTPRE-208ENST00000479896 PDZRN3Q9UPQ7 1066 aa14.67□□□□□ -0.06
PTPRE-208ENST00000479896 ERBINQ96RT1 1412 aa14.67□□□□□ -0.06
PTPRE-208ENST00000479896 NASPP49321 788 aaPredicted RBP14.66□□□□□ -0.06
PTPRE-208ENST00000479896 XPCQ01831 940 aaPredicted RBP14.66□□□□□ -0.06
PTPRE-208ENST00000479896 FIBPO43427 364 aa14.66□□□□□ -0.06
PTPRE-208ENST00000479896 CAVIN4Q5BKX8 364 aa14.66□□□□□ -0.06
PTPRE-208ENST00000479896 CRACR2BQ8N4Y2 399 aaPredicted RBP14.66□□□□□ -0.06
PTPRE-208ENST00000479896 TSR2Q969E8 191 aaKnown RBP14.66□□□□□ -0.06
PTPRE-208ENST00000479896 AIDAQ96BJ3 306 aa14.66□□□□□ -0.06
PTPRE-208ENST00000479896 USP5P45974 858 aa14.66□□□□□ -0.06
PTPRE-208ENST00000479896 ME1P48163 572 aa14.66□□□□□ -0.06
PTPRE-208ENST00000479896 PPP4R3AQ6IN85 833 aa14.66□□□□□ -0.06
PTPRE-208ENST00000479896 SLC12A5Q9H2X9 1139 aa14.66□□□□□ -0.06
PTPRE-208ENST00000479896 FAM43AQ8N2R8 423 aa14.66□□□□□ -0.06
PTPRE-208ENST00000479896 SEPT11Q9NVA2 429 aaKnown RBP14.66□□□□□ -0.06
PTPRE-208ENST00000479896 MAP4K4O95819 1239 aaPredicted RBP14.65□□□□□ -0.06
PTPRE-208ENST00000479896 CCDC181Q5TID7 509 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 MAP7D2Q96T17 732 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 PDE3AQ14432 1141 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 WDR63Q8IWG1 891 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 AKAP2Q9Y2D5 859 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 GNAT3A8MTJ3 354 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 CBFA2T2O43439 604 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 ZC3H6P61129 1189 aaKnown RBP14.65□□□□□ -0.06
PTPRE-208ENST00000479896 KRT32Q14532 448 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 SRGAP3O43295 1099 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 RNF214Q8ND24 703 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 SCLT1Q96NL6 688 aa14.65□□□□□ -0.06
PTPRE-208ENST00000479896 SEC63Q9UGP8 760 aaKnown RBP14.65□□□□□ -0.06
PTPRE-208ENST00000479896 POTEJP0CG39 1038 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms