RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 PRAM1Q96QH2 718 aa8.92□□□□□ -0.98
LDB3-206ENST00000477489 RGS17Q9UGC6 210 aaPredicted RBP8.92□□□□□ -0.98
LDB3-206ENST00000477489 NEFLP07196 543 aa8.91□□□□□ -0.98
LDB3-206ENST00000477489 NUTM2DQ5VT03 806 aaPredicted RBP8.91□□□□□ -0.98
LDB3-206ENST00000477489 PHF8Q9UPP1 1060 aa8.91□□□□□ -0.98
LDB3-206ENST00000477489 TBX22Q9Y458 520 aa8.91□□□□□ -0.98
LDB3-206ENST00000477489 TOM1O60784 492 aa8.9□□□□□ -0.98
LDB3-206ENST00000477489 MS4A4AQ96JQ5 239 aa8.9□□□□□ -0.98
LDB3-206ENST00000477489 CARD14Q9BXL6 1004 aa8.9□□□□□ -0.98
LDB3-206ENST00000477489 TMEM121BQ9BXQ6 578 aaPredicted RBP8.9□□□□□ -0.98
LDB3-206ENST00000477489 STK24Q9Y6E0 443 aa8.9□□□□□ -0.98
LDB3-206ENST00000477489 KIF20BQ96Q89 1820 aa8.89□□□□□ -0.99
LDB3-206ENST00000477489 METP08581 1390 aa8.89□□□□□ -0.99
LDB3-206ENST00000477489 STK25O00506 426 aa8.89□□□□□ -0.99
LDB3-206ENST00000477489 SRPK2P78362 688 aaKnown RBP8.89□□□□□ -0.99
LDB3-206ENST00000477489 HDGFL2Q7Z4V5 671 aaPredicted RBP8.89□□□□□ -0.99
LDB3-206ENST00000477489 CDC42BPGQ6DT37 1551 aa8.89□□□□□ -0.99
LDB3-206ENST00000477489 MON2Q7Z3U7 1717 aa8.88□□□□□ -0.99
LDB3-206ENST00000477489 XRN1Q8IZH2 1706 aaKnown RBP8.88□□□□□ -0.99
LDB3-206ENST00000477489 WDR43Q15061 677 aaKnown RBP eCLIP8.88□□□□□ -0.99
LDB3-206ENST00000477489 TXNDC2Q86VQ3 553 aa8.88□□□□□ -0.99
LDB3-206ENST00000477489 SLC12A5Q9H2X9 1139 aa8.88□□□□□ -0.99
LDB3-206ENST00000477489 STK26Q9P289 416 aa8.88□□□□□ -0.99
LDB3-206ENST00000477489 PCDH10Q9P2E7 1040 aa8.88□□□□□ -0.99
LDB3-206ENST00000477489 AKAP12Q02952 1782 aa8.88□□□□□ -0.99
LDB3-206ENST00000477489 CD163L1Q9NR16 1453 aa8.88□□□□□ -0.99
LDB3-206ENST00000477489 ITSN1Q15811 1721 aa8.88□□□□□ -0.99
LDB3-206ENST00000477489 TOPAZ1Q8N9V7 1692 aa8.88□□□□□ -0.99
LDB3-206ENST00000477489 A0A1W2PP64 1363 aa8.87□□□□□ -0.99
LDB3-206ENST00000477489 WASLO00401 505 aaPredicted RBP8.87□□□□□ -0.99
LDB3-206ENST00000477489 MORC1Q86VD1 984 aa8.87□□□□□ -0.99
LDB3-206ENST00000477489 CDK19Q9BWU1 502 aa8.87□□□□□ -0.99
LDB3-206ENST00000477489 NUDCQ9Y266 331 aa8.87□□□□□ -0.99
LDB3-206ENST00000477489 MINK1Q8N4C8 1332 aaPredicted RBP8.86□□□□□ -0.99
LDB3-206ENST00000477489 MICALL2Q8IY33 904 aa8.86□□□□□ -0.99
LDB3-206ENST00000477489 CFAP53Q96M91 514 aa8.86□□□□□ -0.99
LDB3-206ENST00000477489 CPSF1Q10570 1443 aaKnown RBP8.86□□□□□ -0.99
LDB3-206ENST00000477489 EDC4Q6P2E9 1401 aaKnown RBP8.86□□□□□ -0.99
LDB3-206ENST00000477489 LTKP29376 864 aa8.85□□□□□ -0.99
LDB3-206ENST00000477489 NLRP6P59044 892 aa8.85□□□□□ -0.99
LDB3-206ENST00000477489 FBXO22Q8NEZ5 403 aa8.85□□□□□ -0.99
LDB3-206ENST00000477489 SUPT16HQ9Y5B9 1047 aaKnown RBP8.85□□□□□ -0.99
LDB3-206ENST00000477489 ANKARQ7Z5J8 1434 aa8.85□□□□□ -0.99
LDB3-206ENST00000477489 SHPRHQ149N8 1683 aa8.85□□□□□ -0.99
LDB3-206ENST00000477489 POTEAQ6S8J7 498 aa8.84□□□□□ -0.99
LDB3-206ENST00000477489 PLSCR2Q9NRY7 297 aa8.84□□□□□ -0.99
LDB3-206ENST00000477489 CHD2O14647 1828 aaKnown RBP8.84□□□□□ -0.99
LDB3-206ENST00000477489 ROBO2Q9HCK4 1378 aa8.84□□□□□ -0.99
LDB3-206ENST00000477489 PLEKHH1Q9ULM0 1364 aa8.84□□□□□ -0.99
LDB3-206ENST00000477489 RNF123Q5XPI4 1314 aa8.83□□□□□ -1
LDB3-206ENST00000477489 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.83□□□□□ -1
LDB3-206ENST00000477489 PPIP5K1Q6PFW1 1433 aa8.83□□□□□ -1
LDB3-206ENST00000477489 ANKLE2Q86XL3 938 aa8.83□□□□□ -1
LDB3-206ENST00000477489 BCANQ96GW7 911 aa8.83□□□□□ -1
LDB3-206ENST00000477489 MFRPQ9BY79 579 aa8.83□□□□□ -1
LDB3-206ENST00000477489 LRRC7Q96NW7 1537 aa8.83□□□□□ -1
LDB3-206ENST00000477489 AATKQ6ZMQ8 1374 aa8.83□□□□□ -1
LDB3-206ENST00000477489 NRKQ7Z2Y5 1582 aa8.82□□□□□ -1
LDB3-206ENST00000477489 CNGB1Q14028 1251 aaPredicted RBP8.82□□□□□ -1
LDB3-206ENST00000477489 SAFB2Q14151 953 aaKnown RBP eCLIP8.82□□□□□ -1
LDB3-206ENST00000477489 WAPLQ7Z5K2 1190 aa8.82□□□□□ -1
LDB3-206ENST00000477489 ADAMTS8Q9UP79 889 aa8.82□□□□□ -1
LDB3-206ENST00000477489 PTPRUQ92729 1446 aa8.81□□□□□ -1
LDB3-206ENST00000477489 PLEKHG3A1L390 1219 aa8.81□□□□□ -1
LDB3-206ENST00000477489 NUDT16Q96DE0 195 aaKnown RBP8.81□□□□□ -1
LDB3-206ENST00000477489 PNNQ9H307 717 aaKnown RBP8.81□□□□□ -1
LDB3-206ENST00000477489 CABP1Q9NZU7 370 aa8.81□□□□□ -1
LDB3-206ENST00000477489 PNPLA6Q8IY17 1366 aa8.81□□□□□ -1
LDB3-206ENST00000477489 NWD1Q149M9 1564 aa8.81□□□□□ -1
LDB3-206ENST00000477489 ZNF521Q96K83 1311 aa8.8□□□□□ -1
LDB3-206ENST00000477489 FYB1O15117 783 aa8.8□□□□□ -1
LDB3-206ENST00000477489 AMOTL2Q9Y2J4 779 aa8.8□□□□□ -1
LDB3-206ENST00000477489 COL3A1P02461 1466 aaPredicted RBP8.8□□□□□ -1
LDB3-206ENST00000477489 USP54Q70EL1 1684 aa8.8□□□□□ -1
LDB3-206ENST00000477489 NALCNQ8IZF0 1738 aa8.8□□□□□ -1
LDB3-206ENST00000477489 FMN2Q9NZ56 1722 aa8.8□□□□□ -1
LDB3-206ENST00000477489 CDK12Q9NYV4 1490 aaPredicted RBP8.79□□□□□ -1
LDB3-206ENST00000477489 CCDC27Q2M243 656 aa8.79□□□□□ -1
LDB3-206ENST00000477489 TMEM92Q6UXU6 159 aa8.79□□□□□ -1
LDB3-206ENST00000477489 CDAN1Q8IWY9 1227 aa8.79□□□□□ -1
LDB3-206ENST00000477489 MARVELD3Q96A59 401 aa8.79□□□□□ -1
LDB3-206ENST00000477489 NPHP4O75161 1426 aaPredicted RBP8.79□□□□□ -1
LDB3-206ENST00000477489 TTC21AQ8NDW8 1320 aa8.79□□□□□ -1
LDB3-206ENST00000477489 HOXB3P14651 431 aaPredicted RBP8.78□□□□□ -1
LDB3-206ENST00000477489 MTHFSP49914 203 aa8.78□□□□□ -1
LDB3-206ENST00000477489 RUNDC1Q96C34 613 aa8.78□□□□□ -1
LDB3-206ENST00000477489 MAP2P11137 1827 aaKnown RBP8.77□□□□□ -1
LDB3-206ENST00000477489 NKTRP30414 1462 aaKnown RBP8.77□□□□□ -1
LDB3-206ENST00000477489 STRCP1A6NGW2 1772 aa8.77□□□□□ -1.01
LDB3-206ENST00000477489 SLC26A8Q96RN1 970 aa8.77□□□□□ -1.01
LDB3-206ENST00000477489 USP6P35125 1406 aa8.77□□□□□ -1.01
LDB3-206ENST00000477489 SSH2Q76I76 1423 aa8.77□□□□□ -1.01
LDB3-206ENST00000477489 NCOA3Q9Y6Q9 1424 aa8.77□□□□□ -1.01
LDB3-206ENST00000477489 KIF24Q5T7B8 1368 aa8.76□□□□□ -1.01
LDB3-206ENST00000477489 E9PSI1 815 aa8.76□□□□□ -1.01
LDB3-206ENST00000477489 UPF1Q92900 1129 aaKnown RBP eCLIP8.76□□□□□ -1.01
LDB3-206ENST00000477489 PRR36Q9H6K5 1346 aa8.76□□□□□ -1.01
LDB3-206ENST00000477489 USP31Q70CQ4 1352 aa8.75□□□□□ -1.01
LDB3-206ENST00000477489 OVOS2A0A0J9YW53 1432 aa8.75□□□□□ -1.01
LDB3-206ENST00000477489 OVOS2Q6IE36 1432 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms