RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 WDR43Q15061 677 aaKnown RBP eCLIP27.43■■□□□ 1.98
SMIM11A-204ENST00000474455 CDK12Q9NYV4 1490 aaPredicted RBP27.43■■□□□ 1.98
SMIM11A-204ENST00000474455 ARHGEF10O15013 1369 aa27.42■■□□□ 1.98
SMIM11A-204ENST00000474455 ZC3H6P61129 1189 aaKnown RBP27.41■■□□□ 1.98
SMIM11A-204ENST00000474455 KCNH5Q8NCM2 988 aa27.41■■□□□ 1.98
SMIM11A-204ENST00000474455 INSRP06213 1382 aa27.41■■□□□ 1.98
SMIM11A-204ENST00000474455 RGPD5Q99666 1765 aa27.41■■□□□ 1.98
SMIM11A-204ENST00000474455 DIAPH1O60610 1272 aaKnown RBP27.4■■□□□ 1.98
SMIM11A-204ENST00000474455 AMPHP49418 695 aa27.4■■□□□ 1.98
SMIM11A-204ENST00000474455 BCL11AQ9H165 835 aa27.4■■□□□ 1.98
SMIM11A-204ENST00000474455 U2SURPO15042 1029 aaKnown RBP27.38■■□□□ 1.97
SMIM11A-204ENST00000474455 HOXC9P31274 260 aa27.38■■□□□ 1.97
SMIM11A-204ENST00000474455 IL13P35225 146 aa27.38■■□□□ 1.97
SMIM11A-204ENST00000474455 COL16A1Q07092 1604 aaPredicted RBP27.38■■□□□ 1.97
SMIM11A-204ENST00000474455 ABCA3Q99758 1704 aa27.37■■□□□ 1.97
SMIM11A-204ENST00000474455 ARHGEF25Q86VW2 580 aa27.37■■□□□ 1.97
SMIM11A-204ENST00000474455 CCDC146Q8IYE0 955 aa27.37■■□□□ 1.97
SMIM11A-204ENST00000474455 EIF4A2Q14240 407 aaKnown RBP27.36■■□□□ 1.97
SMIM11A-204ENST00000474455 LRRC59Q96AG4 307 aaKnown RBP27.36■■□□□ 1.97
SMIM11A-204ENST00000474455 FLT4P35916 1363 aa27.36■■□□□ 1.97
SMIM11A-204ENST00000474455 U2AF1L5P0DN76 240 aaPredicted RBP27.35■■□□□ 1.97
SMIM11A-204ENST00000474455 U2AF1Q01081 240 aaKnown RBP eCLIP27.35■■□□□ 1.97
SMIM11A-204ENST00000474455 RNF123Q5XPI4 1314 aa27.34■■□□□ 1.97
SMIM11A-204ENST00000474455 AXIN2Q9Y2T1 843 aa27.33■■□□□ 1.97
SMIM11A-204ENST00000474455 RGPD2P0DJD1 1756 aa27.32■■□□□ 1.96
SMIM11A-204ENST00000474455 IP6K1Q92551 441 aa27.32■■□□□ 1.96
SMIM11A-204ENST00000474455 LTV1Q96GA3 475 aaPredicted RBP27.32■■□□□ 1.96
SMIM11A-204ENST00000474455 NUDCQ9Y266 331 aa27.32■■□□□ 1.96
SMIM11A-204ENST00000474455 BLMP54132 1417 aaPredicted RBP27.31■■□□□ 1.96
SMIM11A-204ENST00000474455 CHRNA2Q15822 529 aa27.31■■□□□ 1.96
SMIM11A-204ENST00000474455 COL18A1P39060 1754 aa27.3■■□□□ 1.96
SMIM11A-204ENST00000474455 SALL2Q9Y467 1007 aaPredicted RBP27.3■■□□□ 1.96
SMIM11A-204ENST00000474455 HMOX1P09601 288 aa27.3■■□□□ 1.96
SMIM11A-204ENST00000474455 KIAA0232Q92628 1395 aa27.29■■□□□ 1.96
SMIM11A-204ENST00000474455 B4GALNT3Q6L9W6 998 aa27.29■■□□□ 1.96
SMIM11A-204ENST00000474455 RGPD1P0DJD0 1748 aa27.27■■□□□ 1.96
SMIM11A-204ENST00000474455 KIF24Q5T7B8 1368 aa27.27■■□□□ 1.96
SMIM11A-204ENST00000474455 HAP1P54257 671 aaPredicted RBP27.27■■□□□ 1.96
SMIM11A-204ENST00000474455 RTL1A6NKG5 1358 aa27.26■■□□□ 1.95
SMIM11A-204ENST00000474455 COL22A1Q8NFW1 1626 aaPredicted RBP27.25■■□□□ 1.95
SMIM11A-204ENST00000474455 AEBP1Q8IUX7 1158 aa27.25■■□□□ 1.95
SMIM11A-204ENST00000474455 EYA1Q99502 592 aa27.23■■□□□ 1.95
SMIM11A-204ENST00000474455 APAF1O14727 1248 aa27.23■■□□□ 1.95
SMIM11A-204ENST00000474455 PLEKHF1Q96S99 279 aa27.23■■□□□ 1.95
SMIM11A-204ENST00000474455 RSPH6AQ9H0K4 717 aa27.22■■□□□ 1.95
SMIM11A-204ENST00000474455 SULT6B1Q6IMI4 303 aa27.21■■□□□ 1.95
SMIM11A-204ENST00000474455 CPDO75976 1380 aa27.21■■□□□ 1.95
SMIM11A-204ENST00000474455 PRKAR2BP31323 418 aa27.19■■□□□ 1.94
SMIM11A-204ENST00000474455 USHBP1Q8N6Y0 703 aa27.19■■□□□ 1.94
SMIM11A-204ENST00000474455 ANKRD24Q8TF21 1146 aa27.19■■□□□ 1.94
SMIM11A-204ENST00000474455 RUNDC1Q96C34 613 aa27.19■■□□□ 1.94
SMIM11A-204ENST00000474455 PRDM11Q9NQV5 511 aa27.19■■□□□ 1.94
SMIM11A-204ENST00000474455 FAM83GA6ND36 823 aa27.18■■□□□ 1.94
SMIM11A-204ENST00000474455 FCHSD2O94868 740 aa27.18■■□□□ 1.94
SMIM11A-204ENST00000474455 HSPA1LP34931 641 aa27.18■■□□□ 1.94
SMIM11A-204ENST00000474455 NBPF6Q5VWK0 638 aa27.18■■□□□ 1.94
SMIM11A-204ENST00000474455 NBPF4Q96M43 638 aa27.18■■□□□ 1.94
SMIM11A-204ENST00000474455 RRP7AQ9Y3A4 280 aaKnown RBP27.18■■□□□ 1.94
SMIM11A-204ENST00000474455 PHACTR3Q96KR7 559 aa27.17■■□□□ 1.94
SMIM11A-204ENST00000474455 TCP11L2Q8N4U5 519 aa27.17■■□□□ 1.94
SMIM11A-204ENST00000474455 CAMTA1Q9Y6Y1 1673 aa27.16■■□□□ 1.94
SMIM11A-204ENST00000474455 IGSF1Q8N6C5 1336 aa27.16■■□□□ 1.94
SMIM11A-204ENST00000474455 NUTM2BA6NNL0 878 aaPredicted RBP27.16■■□□□ 1.94
SMIM11A-204ENST00000474455 NUTM2EB1AL46 878 aaPredicted RBP27.16■■□□□ 1.94
SMIM11A-204ENST00000474455 NEUROD2Q15784 382 aa27.16■■□□□ 1.94
SMIM11A-204ENST00000474455 NUTM2AQ8IVF1 878 aaPredicted RBP27.16■■□□□ 1.94
SMIM11A-204ENST00000474455 LMO7Q8WWI1 1683 aa27.16■■□□□ 1.94
SMIM11A-204ENST00000474455 ERBB3P21860 1342 aa27.14■■□□□ 1.94
SMIM11A-204ENST00000474455 ADAMTS2O95450 1211 aa27.13■■□□□ 1.93
SMIM11A-204ENST00000474455 DLG5Q8TDM6 1919 aa27.12■■□□□ 1.93
SMIM11A-204ENST00000474455 CCDC136Q96JN2 1154 aa27.1■■□□□ 1.93
SMIM11A-204ENST00000474455 NOP58Q9Y2X3 529 aaKnown RBP27.1■■□□□ 1.93
SMIM11A-204ENST00000474455 KDRP35968 1356 aa27.09■■□□□ 1.93
SMIM11A-204ENST00000474455 ABCC6O95255 1503 aa27.08■■□□□ 1.93
SMIM11A-204ENST00000474455 MAPK8IP3Q9UPT6 1336 aa27.08■■□□□ 1.93
SMIM11A-204ENST00000474455 JCADQ9P266 1359 aa27.08■■□□□ 1.93
SMIM11A-204ENST00000474455 TMPOP42166 694 aaKnown RBP27.07■■□□□ 1.92
SMIM11A-204ENST00000474455 CSB-PGBD3P0DP91 1061 aa27.06■■□□□ 1.92
SMIM11A-204ENST00000474455 PNNQ9H307 717 aaKnown RBP27.06■■□□□ 1.92
SMIM11A-204ENST00000474455 COL5A2P05997 1499 aaPredicted RBP27.06■■□□□ 1.92
SMIM11A-204ENST00000474455 COL14A1Q05707 1796 aaKnown RBP27.06■■□□□ 1.92
SMIM11A-204ENST00000474455 STRN4Q9NRL3 753 aa27.06■■□□□ 1.92
SMIM11A-204ENST00000474455 NLRP2Q9NX02 1062 aa27.06■■□□□ 1.92
SMIM11A-204ENST00000474455 BTG4Q9NY30 223 aa27.06■■□□□ 1.92
SMIM11A-204ENST00000474455 CDCA7LQ96GN5 454 aa27.04■■□□□ 1.92
SMIM11A-204ENST00000474455 FAM208AQ9UK61 1670 aaKnown RBP27.03■■□□□ 1.92
SMIM11A-204ENST00000474455 PLCH1Q4KWH8 1693 aa27.03■■□□□ 1.92
SMIM11A-204ENST00000474455 ZNF521Q96K83 1311 aa27.02■■□□□ 1.92
SMIM11A-204ENST00000474455 RIPK4P57078 832 aa27.02■■□□□ 1.92
SMIM11A-204ENST00000474455 LARP1Q6PKG0 1096 aaKnown RBP27.02■■□□□ 1.92
SMIM11A-204ENST00000474455 WWC1Q8IX03 1113 aa27.01■■□□□ 1.91
SMIM11A-204ENST00000474455 TRIM35Q9UPQ4 493 aa27.01■■□□□ 1.91
SMIM11A-204ENST00000474455 NCAPD2Q15021 1401 aa27.01■■□□□ 1.91
SMIM11A-204ENST00000474455 NEFMP07197 916 aa27■■□□□ 1.91
SMIM11A-204ENST00000474455 WDR17Q8IZU2 1322 aa27■■□□□ 1.91
SMIM11A-204ENST00000474455 LRP6O75581 1613 aa27■■□□□ 1.91
SMIM11A-204ENST00000474455 EVA1CP58658 441 aa27■■□□□ 1.91
SMIM11A-204ENST00000474455 NFE2L2Q16236 605 aa27■■□□□ 1.91
SMIM11A-204ENST00000474455 MTHFSDQ2M296 383 aaKnown RBP27■■□□□ 1.91
SMIM11A-204ENST00000474455 ANP32AP39687 249 aaKnown RBP26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms