RNA–Protein interactions for RNA: ENST00000473171.5

LSAMP-202, Transcript of limbic system associated membrane protein, humanhuman

TSL 3

Gene LSAMP, Length 640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-202ENST00000473171 SLIT2O94813 1529 aa11.79□□□□□ -0.52
LSAMP-202ENST00000473171 HAP1P54257 671 aaPredicted RBP11.78□□□□□ -0.52
LSAMP-202ENST00000473171 PRAG1Q86YV5 1406 aa11.77□□□□□ -0.52
LSAMP-202ENST00000473171 A0A0G2JS52 829 aa11.77□□□□□ -0.53
LSAMP-202ENST00000473171 EMP3P54852 163 aa11.77□□□□□ -0.53
LSAMP-202ENST00000473171 MYT1Q01538 1121 aa11.77□□□□□ -0.53
LSAMP-202ENST00000473171 WAPLQ7Z5K2 1190 aa11.77□□□□□ -0.53
LSAMP-202ENST00000473171 STK26Q9P289 416 aa11.77□□□□□ -0.53
LSAMP-202ENST00000473171 LRPPRCP42704 1394 aaKnown RBP11.77□□□□□ -0.53
LSAMP-202ENST00000473171 NAIPQ13075 1403 aa11.77□□□□□ -0.53
LSAMP-202ENST00000473171 CDC42BPGQ6DT37 1551 aa11.76□□□□□ -0.53
LSAMP-202ENST00000473171 HRCP23327 699 aa11.76□□□□□ -0.53
LSAMP-202ENST00000473171 KRT27Q7Z3Y8 459 aa11.76□□□□□ -0.53
LSAMP-202ENST00000473171 PPARGC1BQ86YN6 1023 aaKnown RBP11.76□□□□□ -0.53
LSAMP-202ENST00000473171 SPRYD3Q8NCJ5 442 aa11.76□□□□□ -0.53
LSAMP-202ENST00000473171 CABLES1Q8TDN4 633 aa11.76□□□□□ -0.53
LSAMP-202ENST00000473171 SPATA31A3Q5VYP0 1347 aa11.76□□□□□ -0.53
LSAMP-202ENST00000473171 GPHNQ9NQX3 736 aaPredicted RBP11.75□□□□□ -0.53
LSAMP-202ENST00000473171 LRP5O75197 1615 aa11.75□□□□□ -0.53
LSAMP-202ENST00000473171 BAG6P46379 1132 aa11.74□□□□□ -0.53
LSAMP-202ENST00000473171 VPS72Q15906 364 aa11.74□□□□□ -0.53
LSAMP-202ENST00000473171 KRT28Q7Z3Y7 464 aa11.74□□□□□ -0.53
LSAMP-202ENST00000473171 ZSWIM6Q9HCJ5 1215 aa11.74□□□□□ -0.53
LSAMP-202ENST00000473171 PLEKHH1Q9ULM0 1364 aa11.74□□□□□ -0.53
LSAMP-202ENST00000473171 LMOD2Q6P5Q4 547 aa11.73□□□□□ -0.53
LSAMP-202ENST00000473171 USP32Q8NFA0 1604 aa11.72□□□□□ -0.53
LSAMP-202ENST00000473171 CCDC144AA2RUR9 1427 aa11.72□□□□□ -0.53
LSAMP-202ENST00000473171 RPGRIP1LQ68CZ1 1315 aa11.72□□□□□ -0.53
LSAMP-202ENST00000473171 ADGRF5Q8IZF2 1346 aa11.72□□□□□ -0.53
LSAMP-202ENST00000473171 HOXB1P14653 301 aaPredicted RBP11.72□□□□□ -0.53
LSAMP-202ENST00000473171 EN1Q05925 392 aaPredicted RBP11.72□□□□□ -0.53
LSAMP-202ENST00000473171 R3HDM1Q15032 1099 aaKnown RBP11.72□□□□□ -0.53
LSAMP-202ENST00000473171 FAM182BQ5T319 152 aa11.72□□□□□ -0.53
LSAMP-202ENST00000473171 CFAP44Q96MT7 982 aa11.72□□□□□ -0.53
LSAMP-202ENST00000473171 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.72□□□□□ -0.53
LSAMP-202ENST00000473171 PDE4AP27815 886 aa11.71□□□□□ -0.53
LSAMP-202ENST00000473171 FAM98CQ17RN3 349 aaKnown RBP11.71□□□□□ -0.53
LSAMP-202ENST00000473171 TMEM132EQ6IEE7 984 aa11.71□□□□□ -0.53
LSAMP-202ENST00000473171 PAXIP1Q6ZW49 1069 aaPredicted RBP11.71□□□□□ -0.53
LSAMP-202ENST00000473171 MARF1Q9Y4F3 1742 aaKnown RBP11.71□□□□□ -0.54
LSAMP-202ENST00000473171 TNS3Q68CZ2 1445 aa11.7□□□□□ -0.54
LSAMP-202ENST00000473171 ONECUT3O60422 494 aaPredicted RBP11.7□□□□□ -0.54
LSAMP-202ENST00000473171 FOXK1P85037 733 aa11.7□□□□□ -0.54
LSAMP-202ENST00000473171 PLPP6Q8IY26 295 aa11.7□□□□□ -0.54
LSAMP-202ENST00000473171 FAM205CA6NFA0 338 aa11.69□□□□□ -0.54
LSAMP-202ENST00000473171 DSG2Q14126 1118 aa11.69□□□□□ -0.54
LSAMP-202ENST00000473171 RGL3Q3MIN7 710 aa11.69□□□□□ -0.54
LSAMP-202ENST00000473171 BRWD3Q6RI45 1802 aa11.69□□□□□ -0.54
LSAMP-202ENST00000473171 FAM83GA6ND36 823 aa11.68□□□□□ -0.54
LSAMP-202ENST00000473171 ARSIQ5FYB1 569 aa11.68□□□□□ -0.54
LSAMP-202ENST00000473171 TECPR2O15040 1411 aa11.68□□□□□ -0.54
LSAMP-202ENST00000473171 RRBP1Q9P2E9 1410 aaKnown RBP11.68□□□□□ -0.54
LSAMP-202ENST00000473171 ERBB3P21860 1342 aa11.67□□□□□ -0.54
LSAMP-202ENST00000473171 PSME1Q06323 249 aa11.67□□□□□ -0.54
LSAMP-202ENST00000473171 CRISPLD2Q9H0B8 497 aa11.67□□□□□ -0.54
LSAMP-202ENST00000473171 KIF1BO60333 1816 aa11.67□□□□□ -0.54
LSAMP-202ENST00000473171 SAFB2Q14151 953 aaKnown RBP eCLIP11.66□□□□□ -0.54
LSAMP-202ENST00000473171 GPR153Q6NV75 609 aa11.66□□□□□ -0.54
LSAMP-202ENST00000473171 CDAN1Q8IWY9 1227 aa11.66□□□□□ -0.54
LSAMP-202ENST00000473171 BTG4Q9NY30 223 aa11.66□□□□□ -0.54
LSAMP-202ENST00000473171 ABCC11Q96J66 1382 aa11.66□□□□□ -0.54
LSAMP-202ENST00000473171 YY1P25490 414 aa11.65□□□□□ -0.54
LSAMP-202ENST00000473171 EZH2Q15910 746 aaKnown RBP11.65□□□□□ -0.54
LSAMP-202ENST00000473171 PMFBP1Q8TBY8 1022 aa11.65□□□□□ -0.54
LSAMP-202ENST00000473171 LARP6Q9BRS8 491 aaKnown RBP11.65□□□□□ -0.54
LSAMP-202ENST00000473171 PLCH1Q4KWH8 1693 aa11.65□□□□□ -0.55
LSAMP-202ENST00000473171 SLC34A2O95436 690 aa11.64□□□□□ -0.55
LSAMP-202ENST00000473171 PPP1R15BQ5SWA1 713 aa11.64□□□□□ -0.55
LSAMP-202ENST00000473171 KIF1AQ12756 1690 aa11.64□□□□□ -0.55
LSAMP-202ENST00000473171 SBNO1A3KN83 1393 aa11.64□□□□□ -0.55
LSAMP-202ENST00000473171 ARHGEF10O15013 1369 aa11.64□□□□□ -0.55
LSAMP-202ENST00000473171 FMN2Q9NZ56 1722 aa11.63□□□□□ -0.55
LSAMP-202ENST00000473171 YTHDC2Q9H6S0 1430 aaKnown RBP11.63□□□□□ -0.55
LSAMP-202ENST00000473171 HS3ST6Q96QI5 342 aa11.63□□□□□ -0.55
LSAMP-202ENST00000473171 PCDHGA4Q9Y5G9 962 aa11.63□□□□□ -0.55
LSAMP-202ENST00000473171 PPLO60437 1756 aa11.63□□□□□ -0.55
LSAMP-202ENST00000473171 NRXN1Q9ULB1 1477 aa11.63□□□□□ -0.55
LSAMP-202ENST00000473171 KHSRPQ92945 711 aaKnown RBP eCLIP11.62□□□□□ -0.55
LSAMP-202ENST00000473171 DDX27Q96GQ7 796 aaKnown RBP11.62□□□□□ -0.55
LSAMP-202ENST00000473171 PIK3C2GO75747 1445 aa11.61□□□□□ -0.55
LSAMP-202ENST00000473171 TRIM37O94972 964 aa11.61□□□□□ -0.55
LSAMP-202ENST00000473171 PRAM1Q96QH2 718 aa11.61□□□□□ -0.55
LSAMP-202ENST00000473171 SPATA31A5Q5VU36 1347 aa11.6□□□□□ -0.55
LSAMP-202ENST00000473171 SPATA31A7Q8IWB4 1347 aa11.6□□□□□ -0.55
LSAMP-202ENST00000473171 DISP2A7MBM2 1401 aa11.6□□□□□ -0.55
LSAMP-202ENST00000473171 ANKRD30BQ9BXX2 1392 aa11.6□□□□□ -0.55
LSAMP-202ENST00000473171 TBC1D12O60347 775 aa11.6□□□□□ -0.55
LSAMP-202ENST00000473171 NUDT7P0C024 238 aa11.6□□□□□ -0.55
LSAMP-202ENST00000473171 CAMKK2Q96RR4 588 aa11.6□□□□□ -0.55
LSAMP-202ENST00000473171 NWD2Q9ULI1 1742 aa11.6□□□□□ -0.55
LSAMP-202ENST00000473171 SPATA31E1Q6ZUB1 1445 aa11.6□□□□□ -0.55
LSAMP-202ENST00000473171 VARS2Q5ST30 1063 aaKnown RBP11.59□□□□□ -0.55
LSAMP-202ENST00000473171 ABCA3Q99758 1704 aa11.59□□□□□ -0.55
LSAMP-202ENST00000473171 NRAPQ86VF7 1730 aa11.58□□□□□ -0.56
LSAMP-202ENST00000473171 APBA3O96018 575 aa11.58□□□□□ -0.56
LSAMP-202ENST00000473171 CFAP70Q5T0N1 1121 aa11.58□□□□□ -0.56
LSAMP-202ENST00000473171 HIRIP3Q9BW71 556 aaPredicted RBP11.58□□□□□ -0.56
LSAMP-202ENST00000473171 PRDM11Q9NQV5 511 aa11.58□□□□□ -0.56
LSAMP-202ENST00000473171 KNDC1Q76NI1 1749 aa11.57□□□□□ -0.56
LSAMP-202ENST00000473171 PTCD2Q8WV60 388 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms