RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 AMPHP49418 695 aa16.91■□□□□ 0.3
VPS13D-205ENST00000473099 CCDC146Q8IYE0 955 aa16.91■□□□□ 0.3
VPS13D-205ENST00000473099 RGPD5Q99666 1765 aa16.91■□□□□ 0.3
VPS13D-205ENST00000473099 MAPK8IP3Q9UPT6 1336 aa16.91■□□□□ 0.3
VPS13D-205ENST00000473099 ROBO1Q9Y6N7 1651 aa16.91■□□□□ 0.3
VPS13D-205ENST00000473099 NUTM2GQ5VZR2 741 aa16.9■□□□□ 0.3
VPS13D-205ENST00000473099 FAM208AQ9UK61 1670 aaKnown RBP16.9■□□□□ 0.3
VPS13D-205ENST00000473099 ABCA3Q99758 1704 aa16.9■□□□□ 0.3
VPS13D-205ENST00000473099 XPCQ01831 940 aaPredicted RBP16.89■□□□□ 0.29
VPS13D-205ENST00000473099 SPATA31A3Q5VYP0 1347 aa16.89■□□□□ 0.29
VPS13D-205ENST00000473099 SOX12O15370 315 aa16.88■□□□□ 0.29
VPS13D-205ENST00000473099 EIF4A2Q14240 407 aaKnown RBP16.88■□□□□ 0.29
VPS13D-205ENST00000473099 CCDC27Q2M243 656 aa16.88■□□□□ 0.29
VPS13D-205ENST00000473099 LMOD2Q6P5Q4 547 aa16.88■□□□□ 0.29
VPS13D-205ENST00000473099 TCP11L2Q8N4U5 519 aa16.88■□□□□ 0.29
VPS13D-205ENST00000473099 PLEKHF1Q96S99 279 aa16.88■□□□□ 0.29
VPS13D-205ENST00000473099 SOS2Q07890 1332 aaPredicted RBP16.88■□□□□ 0.29
VPS13D-205ENST00000473099 ZNF521Q96K83 1311 aa16.88■□□□□ 0.29
VPS13D-205ENST00000473099 AHDC1Q5TGY3 1603 aaPredicted RBP16.88■□□□□ 0.29
VPS13D-205ENST00000473099 SOCS7O14512 581 aa16.87■□□□□ 0.29
VPS13D-205ENST00000473099 RSPH6AQ9H0K4 717 aa16.87■□□□□ 0.29
VPS13D-205ENST00000473099 RGPD2P0DJD1 1756 aa16.87■□□□□ 0.29
VPS13D-205ENST00000473099 GCP02774 474 aa16.86■□□□□ 0.29
VPS13D-205ENST00000473099 HOXC9P31274 260 aa16.86■□□□□ 0.29
VPS13D-205ENST00000473099 IP6K1Q92551 441 aa16.86■□□□□ 0.29
VPS13D-205ENST00000473099 SALL2Q9Y467 1007 aaPredicted RBP16.86■□□□□ 0.29
VPS13D-205ENST00000473099 COL18A1P39060 1754 aa16.85■□□□□ 0.29
VPS13D-205ENST00000473099 GOLGA2Q08379 1002 aa16.85■□□□□ 0.29
VPS13D-205ENST00000473099 HSP90AB2PQ58FF8 381 aa16.85■□□□□ 0.29
VPS13D-205ENST00000473099 CAMTA1Q9Y6Y1 1673 aa16.85■□□□□ 0.29
VPS13D-205ENST00000473099 ARHGEF25Q86VW2 580 aa16.84■□□□□ 0.29
VPS13D-205ENST00000473099 PRKAR2BP31323 418 aa16.83■□□□□ 0.28
VPS13D-205ENST00000473099 KDRP35968 1356 aa16.83■□□□□ 0.28
VPS13D-205ENST00000473099 WDR63Q8IWG1 891 aa16.83■□□□□ 0.28
VPS13D-205ENST00000473099 PHLPP1O60346 1717 aa16.82■□□□□ 0.28
VPS13D-205ENST00000473099 IGSF1Q8N6C5 1336 aa16.82■□□□□ 0.28
VPS13D-205ENST00000473099 TMPOP42166 694 aaKnown RBP16.82■□□□□ 0.28
VPS13D-205ENST00000473099 WWC1Q8IX03 1113 aa16.82■□□□□ 0.28
VPS13D-205ENST00000473099 DDX17Q92841 729 aaKnown RBP16.82■□□□□ 0.28
VPS13D-205ENST00000473099 COL22A1Q8NFW1 1626 aaPredicted RBP16.81■□□□□ 0.28
VPS13D-205ENST00000473099 E9PSI1 815 aa16.81■□□□□ 0.28
VPS13D-205ENST00000473099 CPDO75976 1380 aa16.8■□□□□ 0.28
VPS13D-205ENST00000473099 VIRMAQ69YN4 1812 aaKnown RBP16.8■□□□□ 0.28
VPS13D-205ENST00000473099 SENP3-EIF4A1A0A087X0R7 540 aa16.8■□□□□ 0.28
VPS13D-205ENST00000473099 NEFLP07196 543 aa16.8■□□□□ 0.28
VPS13D-205ENST00000473099 HMOX1P09601 288 aa16.8■□□□□ 0.28
VPS13D-205ENST00000473099 SLFN5Q08AF3 891 aa16.79■□□□□ 0.28
VPS13D-205ENST00000473099 LMOD3Q0VAK6 560 aa16.79■□□□□ 0.28
VPS13D-205ENST00000473099 NFE2L2Q16236 605 aa16.79■□□□□ 0.28
VPS13D-205ENST00000473099 SULT6B1Q6IMI4 303 aa16.79■□□□□ 0.28
VPS13D-205ENST00000473099 GTF3C3Q9Y5Q9 886 aa16.79■□□□□ 0.28
VPS13D-205ENST00000473099 IL16Q14005 1332 aa16.78■□□□□ 0.28
VPS13D-205ENST00000473099 RIPK4P57078 832 aa16.77■□□□□ 0.28
VPS13D-205ENST00000473099 CALD1Q05682 793 aaKnown RBP16.77■□□□□ 0.28
VPS13D-205ENST00000473099 NEUROD2Q15784 382 aa16.77■□□□□ 0.28
VPS13D-205ENST00000473099 TRMT2AQ8IZ69 625 aaKnown RBP16.77■□□□□ 0.28
VPS13D-205ENST00000473099 RRP7AQ9Y3A4 280 aaKnown RBP16.77■□□□□ 0.28
VPS13D-205ENST00000473099 LMO7Q8WWI1 1683 aa16.77■□□□□ 0.28
VPS13D-205ENST00000473099 DUSP27Q5VZP5 1158 aa16.76■□□□□ 0.27
VPS13D-205ENST00000473099 CDCA7LQ96GN5 454 aa16.76■□□□□ 0.27
VPS13D-205ENST00000473099 EYA1Q99502 592 aa16.76■□□□□ 0.27
VPS13D-205ENST00000473099 NCAPD2Q15021 1401 aa16.76■□□□□ 0.27
VPS13D-205ENST00000473099 COL16A1Q07092 1604 aaPredicted RBP16.75■□□□□ 0.27
VPS13D-205ENST00000473099 LRRC59Q96AG4 307 aaKnown RBP16.75■□□□□ 0.27
VPS13D-205ENST00000473099 MYH16Q9H6N6 1097 aa16.75■□□□□ 0.27
VPS13D-205ENST00000473099 ZBTB7CA1YPR0 619 aa16.74■□□□□ 0.27
VPS13D-205ENST00000473099 SUPT16HQ9Y5B9 1047 aaKnown RBP16.74■□□□□ 0.27
VPS13D-205ENST00000473099 PLEKHG2Q9H7P9 1386 aa16.74■□□□□ 0.27
VPS13D-205ENST00000473099 ZC3H6P61129 1189 aaKnown RBP16.73■□□□□ 0.27
VPS13D-205ENST00000473099 AEBP1Q8IUX7 1158 aa16.73■□□□□ 0.27
VPS13D-205ENST00000473099 PHACTR3Q96KR7 559 aa16.73■□□□□ 0.27
VPS13D-205ENST00000473099 TRIM35Q9UPQ4 493 aa16.73■□□□□ 0.27
VPS13D-205ENST00000473099 COL14A1Q05707 1796 aaKnown RBP16.72■□□□□ 0.27
VPS13D-205ENST00000473099 HAP1P54257 671 aaPredicted RBP16.72■□□□□ 0.27
VPS13D-205ENST00000473099 GAS2L2Q8NHY3 880 aa16.72■□□□□ 0.27
VPS13D-205ENST00000473099 ANKRD24Q8TF21 1146 aa16.72■□□□□ 0.27
VPS13D-205ENST00000473099 RCAN3Q9UKA8 241 aa16.72■□□□□ 0.27
VPS13D-205ENST00000473099 ERBB3P21860 1342 aa16.71■□□□□ 0.27
VPS13D-205ENST00000473099 LTV1Q96GA3 475 aaPredicted RBP16.71■□□□□ 0.27
VPS13D-205ENST00000473099 KIAA0232Q92628 1395 aa16.71■□□□□ 0.27
VPS13D-205ENST00000473099 RNF123Q5XPI4 1314 aa16.7■□□□□ 0.26
VPS13D-205ENST00000473099 PARP4Q9UKK3 1724 aaKnown RBP16.7■□□□□ 0.26
VPS13D-205ENST00000473099 LRRC37A3O60309 1634 aa16.7■□□□□ 0.26
VPS13D-205ENST00000473099 PLEKHG5O94827 1062 aa16.69■□□□□ 0.26
VPS13D-205ENST00000473099 CT47B1P0C2W7 299 aaPredicted RBP16.69■□□□□ 0.26
VPS13D-205ENST00000473099 ERICH6BQ5W0A0 696 aa16.69■□□□□ 0.26
VPS13D-205ENST00000473099 CABLES1Q8TDN4 633 aa16.69■□□□□ 0.26
VPS13D-205ENST00000473099 HTATSF1O43719 755 aaKnown RBP16.68■□□□□ 0.26
VPS13D-205ENST00000473099 PRDM11Q9NQV5 511 aa16.68■□□□□ 0.26
VPS13D-205ENST00000473099 CACNA1FO60840 1977 aa16.68■□□□□ 0.26
VPS13D-205ENST00000473099 PKD1L3Q7Z443 1732 aa16.67■□□□□ 0.26
VPS13D-205ENST00000473099 NBPF6Q5VWK0 638 aa16.67■□□□□ 0.26
VPS13D-205ENST00000473099 NBPF4Q96M43 638 aa16.67■□□□□ 0.26
VPS13D-205ENST00000473099 SPINK5Q9NQ38 1064 aaPredicted RBP16.67■□□□□ 0.26
VPS13D-205ENST00000473099 AXIN2Q9Y2T1 843 aa16.67■□□□□ 0.26
VPS13D-205ENST00000473099 GNAI1P63096 354 aa16.66■□□□□ 0.26
VPS13D-205ENST00000473099 AMOTQ4VCS5 1084 aa16.65■□□□□ 0.26
VPS13D-205ENST00000473099 RTF1Q92541 710 aaKnown RBP16.65■□□□□ 0.26
VPS13D-205ENST00000473099 IFT57Q9NWB7 429 aa16.65■□□□□ 0.26
VPS13D-205ENST00000473099 NWD2Q9ULI1 1742 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms