RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 TOR4AQ9NXH8 423 aa11.31□□□□□ -0.6
CLK1-209ENST00000472679 ESPNB1AK53 854 aa11.3□□□□□ -0.6
CLK1-209ENST00000472679 J3QL48 77 aa11.3□□□□□ -0.6
CLK1-209ENST00000472679 PRR20EP86478 221 aa11.3□□□□□ -0.6
CLK1-209ENST00000472679 PRR20CP86479 221 aa11.3□□□□□ -0.6
CLK1-209ENST00000472679 PRR20DP86480 221 aa11.3□□□□□ -0.6
CLK1-209ENST00000472679 PRR20BP86481 221 aa11.3□□□□□ -0.6
CLK1-209ENST00000472679 PRR20AP86496 221 aa11.3□□□□□ -0.6
CLK1-209ENST00000472679 PHTF2Q8N3S3 785 aa11.3□□□□□ -0.6
CLK1-209ENST00000472679 CDV3Q9UKY7 258 aaKnown RBP11.3□□□□□ -0.6
CLK1-209ENST00000472679 ADH1CP00326 375 aa11.29□□□□□ -0.6
CLK1-209ENST00000472679 FSHRP23945 695 aa11.29□□□□□ -0.6
CLK1-209ENST00000472679 NBPF20Q3BBV1 942 aa11.29□□□□□ -0.6
CLK1-209ENST00000472679 TSGA10IPQ3SY00 556 aa11.29□□□□□ -0.6
CLK1-209ENST00000472679 CYP4X1Q8N118 509 aa11.29□□□□□ -0.6
CLK1-209ENST00000472679 CCDC82Q8N4S0 544 aa11.29□□□□□ -0.6
CLK1-209ENST00000472679 ZNF592Q92610 1267 aa11.29□□□□□ -0.6
CLK1-209ENST00000472679 TTC24A2A3L6 582 aaPredicted RBP11.28□□□□□ -0.6
CLK1-209ENST00000472679 RAB15P59190 212 aa11.28□□□□□ -0.6
CLK1-209ENST00000472679 INTS6LQ5JSJ4 861 aaKnown RBP11.28□□□□□ -0.6
CLK1-209ENST00000472679 PDZRN3Q9UPQ7 1066 aa11.28□□□□□ -0.6
CLK1-209ENST00000472679 NR3C2P08235 984 aa11.27□□□□□ -0.61
CLK1-209ENST00000472679 TBC1D9Q6ZT07 1266 aa11.27□□□□□ -0.61
CLK1-209ENST00000472679 SMPD1P17405 629 aa11.26□□□□□ -0.61
CLK1-209ENST00000472679 SLFNL1Q499Z3 407 aa11.26□□□□□ -0.61
CLK1-209ENST00000472679 RNF135Q8IUD6 432 aa11.26□□□□□ -0.61
CLK1-209ENST00000472679 CCDC85AQ96PX6 553 aaPredicted RBP11.26□□□□□ -0.61
CLK1-209ENST00000472679 ARID3AQ99856 593 aa11.24□□□□□ -0.61
CLK1-209ENST00000472679 PPP1R12CQ9BZL4 782 aa11.24□□□□□ -0.61
CLK1-209ENST00000472679 TFIP11Q9UBB9 837 aaKnown RBP11.24□□□□□ -0.61
CLK1-209ENST00000472679 WASF2Q9Y6W5 498 aa11.24□□□□□ -0.61
CLK1-209ENST00000472679 PALM3A6NDB9 673 aaPredicted RBP11.23□□□□□ -0.61
CLK1-209ENST00000472679 ERVH48-1M5A8F1 160 aa11.23□□□□□ -0.61
CLK1-209ENST00000472679 SKIP12755 728 aa11.23□□□□□ -0.61
CLK1-209ENST00000472679 NR5A1Q13285 461 aa11.23□□□□□ -0.61
CLK1-209ENST00000472679 NNTQ13423 1086 aa11.23□□□□□ -0.61
CLK1-209ENST00000472679 CCDC97Q96F63 343 aaPredicted RBP11.23□□□□□ -0.61
CLK1-209ENST00000472679 CHIC2Q9UKJ5 165 aa11.23□□□□□ -0.61
CLK1-209ENST00000472679 SEPT12Q8IYM1 358 aa11.22□□□□□ -0.61
CLK1-209ENST00000472679 CDCA7Q9BWT1 371 aaPredicted RBP11.22□□□□□ -0.61
CLK1-209ENST00000472679 TMPRSS4Q9NRS4 437 aa11.22□□□□□ -0.61
CLK1-209ENST00000472679 SERPINA10Q9UK55 444 aa11.22□□□□□ -0.61
CLK1-209ENST00000472679 ATP9BO43861 1147 aa11.21□□□□□ -0.61
CLK1-209ENST00000472679 CFAP70Q5T0N1 1121 aa11.21□□□□□ -0.61
CLK1-209ENST00000472679 RNF20Q5VTR2 975 aa11.21□□□□□ -0.61
CLK1-209ENST00000472679 CCDC116Q8IYX3 515 aa11.21□□□□□ -0.61
CLK1-209ENST00000472679 PLPP7Q8NBV4 271 aa11.21□□□□□ -0.61
CLK1-209ENST00000472679 NFATC2IPQ8NCF5 419 aa11.21□□□□□ -0.61
CLK1-209ENST00000472679 GFRA3O60609 400 aa11.2□□□□□ -0.62
CLK1-209ENST00000472679 TRAF7Q6Q0C0 670 aa11.2□□□□□ -0.62
CLK1-209ENST00000472679 DEPDC4Q8N2C3 294 aa11.2□□□□□ -0.62
CLK1-209ENST00000472679 HPS1Q92902 700 aa11.2□□□□□ -0.62
CLK1-209ENST00000472679 PCDHB11Q9Y5F2 797 aa11.2□□□□□ -0.62
CLK1-209ENST00000472679 PPP1R26Q5T8A7 1209 aaPredicted RBP11.19□□□□□ -0.62
CLK1-209ENST00000472679 MAFBQ9Y5Q3 323 aaPredicted RBP11.19□□□□□ -0.62
CLK1-209ENST00000472679 USP17L5A8MUK1 530 aa11.18□□□□□ -0.62
CLK1-209ENST00000472679 KLF16Q9BXK1 252 aaPredicted RBP11.18□□□□□ -0.62
CLK1-209ENST00000472679 DOLKQ9UPQ8 538 aa11.18□□□□□ -0.62
CLK1-209ENST00000472679 RFX1P22670 979 aa11.17□□□□□ -0.62
CLK1-209ENST00000472679 LMOD1P29536 600 aaPredicted RBP11.17□□□□□ -0.62
CLK1-209ENST00000472679 FAM187AA6NFU0 413 aa11.16□□□□□ -0.62
CLK1-209ENST00000472679 SCTRP47872 440 aa11.16□□□□□ -0.62
CLK1-209ENST00000472679 DHX9Q08211 1270 aaKnown RBP11.16□□□□□ -0.62
CLK1-209ENST00000472679 MAP7D1Q3KQU3 841 aa11.16□□□□□ -0.62
CLK1-209ENST00000472679 OXLD1Q5BKU9 147 aa11.16□□□□□ -0.62
CLK1-209ENST00000472679 ZNF784Q8NCA9 323 aaPredicted RBP11.16□□□□□ -0.62
CLK1-209ENST00000472679 USP17L3A6NCW0 530 aa11.15□□□□□ -0.62
CLK1-209ENST00000472679 USP17L4A6NCW7 530 aa11.15□□□□□ -0.62
CLK1-209ENST00000472679 NCOA4Q13772 614 aa11.15□□□□□ -0.62
CLK1-209ENST00000472679 USP17L2Q6R6M4 530 aa11.15□□□□□ -0.62
CLK1-209ENST00000472679 USP17L1Q7RTZ2 530 aa11.15□□□□□ -0.62
CLK1-209ENST00000472679 ITPKCQ96DU7 683 aa11.15□□□□□ -0.62
CLK1-209ENST00000472679 CYLDQ9NQC7 956 aa11.15□□□□□ -0.62
CLK1-209ENST00000472679 NRG2O14511 850 aaPredicted RBP11.14□□□□□ -0.63
CLK1-209ENST00000472679 LILRA1O75019 489 aa11.14□□□□□ -0.63
CLK1-209ENST00000472679 WDR4P57081 412 aaKnown RBP11.14□□□□□ -0.63
CLK1-209ENST00000472679 CCDC125Q86Z20 511 aa11.14□□□□□ -0.63
CLK1-209ENST00000472679 PLEKHM2Q8IWE5 1019 aa11.14□□□□□ -0.63
CLK1-209ENST00000472679 ZFAND3Q9H8U3 227 aa11.14□□□□□ -0.63
CLK1-209ENST00000472679 EMILIN1Q9Y6C2 1016 aa11.14□□□□□ -0.63
CLK1-209ENST00000472679 TIMP2P16035 220 aa11.13□□□□□ -0.63
CLK1-209ENST00000472679 ZIC2O95409 532 aaPredicted RBP11.12□□□□□ -0.63
CLK1-209ENST00000472679 ADD1P35611 737 aaKnown RBP11.12□□□□□ -0.63
CLK1-209ENST00000472679 ERVK-9P63128 1117 aa11.12□□□□□ -0.63
CLK1-209ENST00000472679 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.11□□□□□ -0.63
CLK1-209ENST00000472679 SRPK2P78362 688 aaKnown RBP11.11□□□□□ -0.63
CLK1-209ENST00000472679 MYT1Q01538 1121 aa11.11□□□□□ -0.63
CLK1-209ENST00000472679 CBLBQ13191 982 aa11.11□□□□□ -0.63
CLK1-209ENST00000472679 CDCA8Q53HL2 280 aa11.11□□□□□ -0.63
CLK1-209ENST00000472679 PGPEP1Q9NXJ5 209 aa11.11□□□□□ -0.63
CLK1-209ENST00000472679 EML3Q32P44 896 aa11.1□□□□□ -0.63
CLK1-209ENST00000472679 KANK4Q5T7N3 995 aaPredicted RBP11.1□□□□□ -0.63
CLK1-209ENST00000472679 CC2D2BQ6DHV5 1058 aa11.1□□□□□ -0.63
CLK1-209ENST00000472679 IRX2Q9BZI1 471 aaPredicted RBP11.1□□□□□ -0.63
CLK1-209ENST00000472679 DGAT1O75907 488 aa11.09□□□□□ -0.63
CLK1-209ENST00000472679 AVPP01185 164 aa11.09□□□□□ -0.63
CLK1-209ENST00000472679 USP4Q13107 963 aa11.09□□□□□ -0.63
CLK1-209ENST00000472679 OSBPL3Q9H4L5 887 aa11.09□□□□□ -0.63
CLK1-209ENST00000472679 MKRN1Q9UHC7 482 aaKnown RBP11.09□□□□□ -0.63
CLK1-209ENST00000472679 LZTS3O60299 673 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 1526.7 ms