RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MPRIPQ6WCQ1 1025 aa17.23■□□□□ 0.35
CCDC88A-211ENST00000471947 KDM2BQ8NHM5 1336 aa17.23■□□□□ 0.35
CCDC88A-211ENST00000471947 TAOK2Q9UL54 1235 aa17.22■□□□□ 0.35
CCDC88A-211ENST00000471947 ADGRB3O60242 1522 aa17.22■□□□□ 0.35
CCDC88A-211ENST00000471947 OS9Q13438 667 aaPredicted RBP17.22■□□□□ 0.35
CCDC88A-211ENST00000471947 C16orf71Q8IYS4 520 aaPredicted RBP17.22■□□□□ 0.35
CCDC88A-211ENST00000471947 SYNMO15061 1565 aa17.22■□□□□ 0.35
CCDC88A-211ENST00000471947 TULP4Q9NRJ4 1543 aa17.22■□□□□ 0.35
CCDC88A-211ENST00000471947 SBNO2Q9Y2G9 1366 aa17.22■□□□□ 0.35
CCDC88A-211ENST00000471947 VAMP4O75379 141 aa17.21■□□□□ 0.35
CCDC88A-211ENST00000471947 PIP4K2AP48426 406 aaPredicted RBP17.21■□□□□ 0.35
CCDC88A-211ENST00000471947 EYA1Q99502 592 aa17.21■□□□□ 0.35
CCDC88A-211ENST00000471947 TEFQ10587 303 aa17.21■□□□□ 0.35
CCDC88A-211ENST00000471947 CHRNA2Q15822 529 aa17.2■□□□□ 0.34
CCDC88A-211ENST00000471947 TMEM2Q9UHN6 1383 aa17.2■□□□□ 0.34
CCDC88A-211ENST00000471947 G2E3Q7L622 706 aa17.2■□□□□ 0.34
CCDC88A-211ENST00000471947 PHF8Q9UPP1 1060 aa17.2■□□□□ 0.34
CCDC88A-211ENST00000471947 GLI2P10070 1586 aa17.2■□□□□ 0.34
CCDC88A-211ENST00000471947 EXOC6BQ9Y2D4 811 aa17.2■□□□□ 0.34
CCDC88A-211ENST00000471947 RIMBP3CA6NJZ7 1639 aa17.19■□□□□ 0.34
CCDC88A-211ENST00000471947 RIMBP3BA6NNM3 1639 aa17.19■□□□□ 0.34
CCDC88A-211ENST00000471947 RIMBP3Q9UFD9 1639 aa17.19■□□□□ 0.34
CCDC88A-211ENST00000471947 FOXD4L6Q3SYB3 417 aaPredicted RBP17.19■□□□□ 0.34
CCDC88A-211ENST00000471947 FOXD4L3Q6VB84 417 aaPredicted RBP17.19■□□□□ 0.34
CCDC88A-211ENST00000471947 TRIM6-TRIM34B2RNG4 842 aa17.19■□□□□ 0.34
CCDC88A-211ENST00000471947 INSRP06213 1382 aa17.19■□□□□ 0.34
CCDC88A-211ENST00000471947 HSP90AB1P08238 724 aaKnown RBP17.19■□□□□ 0.34
CCDC88A-211ENST00000471947 NFKBIBQ15653 356 aa17.18■□□□□ 0.34
CCDC88A-211ENST00000471947 A2ML1A8K2U0 1454 aa17.18■□□□□ 0.34
CCDC88A-211ENST00000471947 POLR1AO95602 1720 aaPredicted RBP17.18■□□□□ 0.34
CCDC88A-211ENST00000471947 RILPL2Q969X0 211 aa17.18■□□□□ 0.34
CCDC88A-211ENST00000471947 MAP4K4O95819 1239 aaPredicted RBP17.18■□□□□ 0.34
CCDC88A-211ENST00000471947 SETD1BQ9UPS6 1966 aaKnown RBP17.17■□□□□ 0.34
CCDC88A-211ENST00000471947 MEIS3Q99687 375 aa17.17■□□□□ 0.34
CCDC88A-211ENST00000471947 JARID2Q92833 1246 aaPredicted RBP17.17■□□□□ 0.34
CCDC88A-211ENST00000471947 CFAP44Q96MT7 982 aa17.16■□□□□ 0.34
CCDC88A-211ENST00000471947 C22orf23Q9BZE7 217 aa17.16■□□□□ 0.34
CCDC88A-211ENST00000471947 IL1RAPL2Q9NP60 686 aa17.16■□□□□ 0.34
CCDC88A-211ENST00000471947 PPP6R1Q9UPN7 881 aa17.16■□□□□ 0.34
CCDC88A-211ENST00000471947 NSD2O96028 1365 aa17.15■□□□□ 0.34
CCDC88A-211ENST00000471947 OTUD7AQ8TE49 926 aaPredicted RBP17.15■□□□□ 0.34
CCDC88A-211ENST00000471947 ZNF530Q6P9A1 599 aaPredicted RBP17.15■□□□□ 0.34
CCDC88A-211ENST00000471947 API5Q9BZZ5 524 aaKnown RBP17.14■□□□□ 0.34
CCDC88A-211ENST00000471947 NCLP19338 710 aaKnown RBP17.14■□□□□ 0.33
CCDC88A-211ENST00000471947 ADGRB1O14514 1584 aa17.14■□□□□ 0.33
CCDC88A-211ENST00000471947 IQGAP1P46940 1657 aa17.14■□□□□ 0.33
CCDC88A-211ENST00000471947 QRICH2Q9H0J4 1663 aa17.14■□□□□ 0.33
CCDC88A-211ENST00000471947 NEXMIFQ5QGS0 1516 aa17.14■□□□□ 0.33
CCDC88A-211ENST00000471947 CCDC27Q2M243 656 aa17.13■□□□□ 0.33
CCDC88A-211ENST00000471947 HDGFL1Q5TGJ6 251 aa17.13■□□□□ 0.33
CCDC88A-211ENST00000471947 CHD1LQ86WJ1 897 aa17.13■□□□□ 0.33
CCDC88A-211ENST00000471947 MRPL50Q8N5N7 158 aaKnown RBP17.13■□□□□ 0.33
CCDC88A-211ENST00000471947 VWDEQ8N2E2 1590 aa17.13■□□□□ 0.33
CCDC88A-211ENST00000471947 CAMSAP1Q5T5Y3 1602 aa17.13■□□□□ 0.33
CCDC88A-211ENST00000471947 IFT57Q9NWB7 429 aa17.13■□□□□ 0.33
CCDC88A-211ENST00000471947 DTNBO60941 627 aa17.12■□□□□ 0.33
CCDC88A-211ENST00000471947 HSCBQ8IWL3 235 aa17.12■□□□□ 0.33
CCDC88A-211ENST00000471947 PIK3C2BO00750 1634 aa17.12■□□□□ 0.33
CCDC88A-211ENST00000471947 ALKQ9UM73 1620 aa17.12■□□□□ 0.33
CCDC88A-211ENST00000471947 MYL6BP14649 208 aa17.11■□□□□ 0.33
CCDC88A-211ENST00000471947 C1orf141Q5JVX7 400 aa17.11■□□□□ 0.33
CCDC88A-211ENST00000471947 RBM42Q9BTD8 480 aaKnown RBP17.11■□□□□ 0.33
CCDC88A-211ENST00000471947 STRN4Q9NRL3 753 aa17.11■□□□□ 0.33
CCDC88A-211ENST00000471947 ATF3P18847 181 aa17.11■□□□□ 0.33
CCDC88A-211ENST00000471947 LGR6Q9HBX8 967 aa17.11■□□□□ 0.33
CCDC88A-211ENST00000471947 KAT6BQ8WYB5 2073 aa17.11■□□□□ 0.33
CCDC88A-211ENST00000471947 SLC39A6Q13433 755 aa17.1■□□□□ 0.33
CCDC88A-211ENST00000471947 CHMP3Q9Y3E7 222 aa17.1■□□□□ 0.33
CCDC88A-211ENST00000471947 PTPRMP28827 1452 aa17.1■□□□□ 0.33
CCDC88A-211ENST00000471947 KCNQ3O43525 872 aa17.1■□□□□ 0.33
CCDC88A-211ENST00000471947 ZBTB40Q9NUA8 1239 aa17.1■□□□□ 0.33
CCDC88A-211ENST00000471947 DEPDC5O75140 1603 aa17.09■□□□□ 0.33
CCDC88A-211ENST00000471947 PUS7Q96PZ0 661 aaKnown RBP17.09■□□□□ 0.33
CCDC88A-211ENST00000471947 SIGLEC1Q9BZZ2 1709 aa17.09■□□□□ 0.33
CCDC88A-211ENST00000471947 ARHGAP31Q2M1Z3 1444 aa17.09■□□□□ 0.33
CCDC88A-211ENST00000471947 GNAT3A8MTJ3 354 aa17.08■□□□□ 0.33
CCDC88A-211ENST00000471947 PHAXQ9H814 394 aaKnown RBP17.08■□□□□ 0.33
CCDC88A-211ENST00000471947 CLTCQ00610 1675 aaKnown RBP17.08■□□□□ 0.32
CCDC88A-211ENST00000471947 CFAP74Q9C0B2 1584 aa17.08■□□□□ 0.32
CCDC88A-211ENST00000471947 LMTK2Q8IWU2 1503 aa17.08■□□□□ 0.32
CCDC88A-211ENST00000471947 GAS2L2Q8NHY3 880 aa17.07■□□□□ 0.32
CCDC88A-211ENST00000471947 NINLQ9Y2I6 1382 aa17.07■□□□□ 0.32
CCDC88A-211ENST00000471947 NBPF6Q5VWK0 638 aa17.06■□□□□ 0.32
CCDC88A-211ENST00000471947 NBPF4Q96M43 638 aa17.06■□□□□ 0.32
CCDC88A-211ENST00000471947 TBX22Q9Y458 520 aa17.06■□□□□ 0.32
CCDC88A-211ENST00000471947 HOXC9P31274 260 aa17.06■□□□□ 0.32
CCDC88A-211ENST00000471947 DDX54Q8TDD1 881 aaKnown RBP17.06■□□□□ 0.32
CCDC88A-211ENST00000471947 EDC4Q6P2E9 1401 aaKnown RBP17.06■□□□□ 0.32
CCDC88A-211ENST00000471947 SIL1Q9H173 461 aa17.05■□□□□ 0.32
CCDC88A-211ENST00000471947 ZBTB7BO15156 539 aaPredicted RBP17.05■□□□□ 0.32
CCDC88A-211ENST00000471947 SURF6O75683 361 aaKnown RBP17.05■□□□□ 0.32
CCDC88A-211ENST00000471947 KRT28Q7Z3Y7 464 aa17.05■□□□□ 0.32
CCDC88A-211ENST00000471947 NUTM1Q86Y26 1132 aa17.05■□□□□ 0.32
CCDC88A-211ENST00000471947 MYO5BQ9ULV0 1848 aa17.05■□□□□ 0.32
CCDC88A-211ENST00000471947 SYTL4Q96C24 671 aaPredicted RBP17.04■□□□□ 0.32
CCDC88A-211ENST00000471947 NRXN1Q9ULB1 1477 aa17.04■□□□□ 0.32
CCDC88A-211ENST00000471947 RAPGEF4Q8WZA2 1011 aa17.04■□□□□ 0.32
CCDC88A-211ENST00000471947 PHF23Q9BUL5 403 aaPredicted RBP17.04■□□□□ 0.32
CCDC88A-211ENST00000471947 TBC1D2Q9BYX2 928 aa17.04■□□□□ 0.32
CCDC88A-211ENST00000471947 C9orf78Q9NZ63 289 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms