RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 GMPR2Q9P2T1 348 aaKnown RBP8.29□□□□□ -1.08
VPS13A-210ENST00000471439 FSHRP23945 695 aa8.28□□□□□ -1.08
VPS13A-210ENST00000471439 TMEM259Q4ZIN3 620 aa8.28□□□□□ -1.08
VPS13A-210ENST00000471439 ZNF787Q6DD87 383 aa8.28□□□□□ -1.08
VPS13A-210ENST00000471439 CDK15Q96Q40 435 aa8.28□□□□□ -1.08
VPS13A-210ENST00000471439 GRM5P41594 1212 aa8.27□□□□□ -1.09
VPS13A-210ENST00000471439 PDXDC2PQ6P474 469 aa8.27□□□□□ -1.09
VPS13A-210ENST00000471439 MPNDQ8N594 471 aa8.27□□□□□ -1.09
VPS13A-210ENST00000471439 GPKOWQ92917 476 aaPredicted RBP eCLIP8.27□□□□□ -1.09
VPS13A-210ENST00000471439 ATP13A2Q9NQ11 1180 aa8.27□□□□□ -1.09
VPS13A-210ENST00000471439 NCAPD3P42695 1498 aa8.26□□□□□ -1.09
VPS13A-210ENST00000471439 WDR62O43379 1518 aa8.26□□□□□ -1.09
VPS13A-210ENST00000471439 TRMT44Q8IYL2 757 aaKnown RBP8.26□□□□□ -1.09
VPS13A-210ENST00000471439 ADAM32Q8TC27 787 aa8.26□□□□□ -1.09
VPS13A-210ENST00000471439 ZFAND3Q9H8U3 227 aa8.26□□□□□ -1.09
VPS13A-210ENST00000471439 LAMC3Q9Y6N6 1575 aa8.26□□□□□ -1.09
VPS13A-210ENST00000471439 CAPN5O15484 640 aaPredicted RBP8.25□□□□□ -1.09
VPS13A-210ENST00000471439 TIMP2P16035 220 aa8.25□□□□□ -1.09
VPS13A-210ENST00000471439 TRIM46Q7Z4K8 759 aa8.25□□□□□ -1.09
VPS13A-210ENST00000471439 KLF16Q9BXK1 252 aaPredicted RBP8.25□□□□□ -1.09
VPS13A-210ENST00000471439 WDR4P57081 412 aaKnown RBP8.24□□□□□ -1.09
VPS13A-210ENST00000471439 VASH1Q7L8A9 365 aaPredicted RBP8.24□□□□□ -1.09
VPS13A-210ENST00000471439 ITPKCQ96DU7 683 aa8.24□□□□□ -1.09
VPS13A-210ENST00000471439 MRC2Q9UBG0 1479 aa8.24□□□□□ -1.09
VPS13A-210ENST00000471439 ZC3H4Q9UPT8 1303 aaKnown RBP8.24□□□□□ -1.09
VPS13A-210ENST00000471439 ZBTB33Q86T24 672 aa8.23□□□□□ -1.09
VPS13A-210ENST00000471439 MAP4K5Q9Y4K4 846 aa8.23□□□□□ -1.09
VPS13A-210ENST00000471439 PDS5BQ9NTI5 1447 aa8.22□□□□□ -1.09
VPS13A-210ENST00000471439 ZIC2O95409 532 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-210ENST00000471439 SNRPBP14678 240 aaKnown RBP8.22□□□□□ -1.09
VPS13A-210ENST00000471439 PTK2Q05397 1052 aa8.22□□□□□ -1.09
VPS13A-210ENST00000471439 TMEM132AQ24JP5 1023 aa8.22□□□□□ -1.09
VPS13A-210ENST00000471439 SLC10A4Q96EP9 437 aa8.22□□□□□ -1.09
VPS13A-210ENST00000471439 FBXO45P0C2W1 286 aa8.21□□□□□ -1.1
VPS13A-210ENST00000471439 BANK1Q8NDB2 785 aa8.21□□□□□ -1.1
VPS13A-210ENST00000471439 RAB15P59190 212 aa8.2□□□□□ -1.1
VPS13A-210ENST00000471439 NR5A1Q13285 461 aa8.2□□□□□ -1.1
VPS13A-210ENST00000471439 KCTD15Q96SI1 283 aaPredicted RBP8.2□□□□□ -1.1
VPS13A-210ENST00000471439 TBC1D2BQ9UPU7 963 aa8.2□□□□□ -1.1
VPS13A-210ENST00000471439 SYNJ2O15056 1496 aa8.19□□□□□ -1.1
VPS13A-210ENST00000471439 C11orf95C9JLR9 678 aaPredicted RBP8.19□□□□□ -1.1
VPS13A-210ENST00000471439 INTS6LQ5JSJ4 861 aaKnown RBP8.19□□□□□ -1.1
VPS13A-210ENST00000471439 ZNF775Q96BV0 537 aaPredicted RBP8.19□□□□□ -1.1
VPS13A-210ENST00000471439 GPSM3Q9Y4H4 160 aa8.19□□□□□ -1.1
VPS13A-210ENST00000471439 CCDC116Q8IYX3 515 aa8.18□□□□□ -1.1
VPS13A-210ENST00000471439 TRIM47Q96LD4 638 aa8.18□□□□□ -1.1
VPS13A-210ENST00000471439 NDUFB9Q9Y6M9 179 aa8.18□□□□□ -1.1
VPS13A-210ENST00000471439 ZBBXA8MT70 800 aa8.17□□□□□ -1.1
VPS13A-210ENST00000471439 CBLBQ13191 982 aa8.17□□□□□ -1.1
VPS13A-210ENST00000471439 PPP1R26Q5T8A7 1209 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-210ENST00000471439 PNMA1Q8ND90 353 aa8.17□□□□□ -1.1
VPS13A-210ENST00000471439 ZFP42Q96MM3 310 aa8.17□□□□□ -1.1
VPS13A-210ENST00000471439 PURBQ96QR8 312 aaKnown RBP8.17□□□□□ -1.1
VPS13A-210ENST00000471439 MCM6Q14566 821 aa8.16□□□□□ -1.1
VPS13A-210ENST00000471439 MRPL14Q6P1L8 145 aaKnown RBP8.16□□□□□ -1.1
VPS13A-210ENST00000471439 SPATA31D1Q6ZQQ2 1576 aa8.16□□□□□ -1.1
VPS13A-210ENST00000471439 DZIP3Q86Y13 1208 aaKnown RBP8.16□□□□□ -1.1
VPS13A-210ENST00000471439 TMPRSS4Q9NRS4 437 aa8.16□□□□□ -1.1
VPS13A-210ENST00000471439 SOBPA7XYQ1 873 aa8.15□□□□□ -1.1
VPS13A-210ENST00000471439 C6orf118Q5T5N4 469 aa8.15□□□□□ -1.1
VPS13A-210ENST00000471439 MEIOBQ8N635 442 aa8.15□□□□□ -1.1
VPS13A-210ENST00000471439 PCDHB9Q9Y5E1 797 aa8.15□□□□□ -1.1
VPS13A-210ENST00000471439 IRF5Q13568 498 aa8.14□□□□□ -1.11
VPS13A-210ENST00000471439 RSF1Q96T23 1441 aaPredicted RBP8.13□□□□□ -1.11
VPS13A-210ENST00000471439 LINC00528Q8N1L1 170 aa8.13□□□□□ -1.11
VPS13A-210ENST00000471439 GDPD2Q9HCC8 539 aa8.13□□□□□ -1.11
VPS13A-210ENST00000471439 GIGYF1O75420 1035 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-210ENST00000471439 NR1H3Q13133 447 aa8.12□□□□□ -1.11
VPS13A-210ENST00000471439 NBPF20Q3BBV1 942 aa8.12□□□□□ -1.11
VPS13A-210ENST00000471439 ZNF784Q8NCA9 323 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-210ENST00000471439 EMILIN1Q9Y6C2 1016 aa8.12□□□□□ -1.11
VPS13A-210ENST00000471439 ESPNB1AK53 854 aa8.11□□□□□ -1.11
VPS13A-210ENST00000471439 ERVH48-1M5A8F1 160 aa8.11□□□□□ -1.11
VPS13A-210ENST00000471439 POM121Q96HA1 1249 aa8.11□□□□□ -1.11
VPS13A-210ENST00000471439 AGBL1Q96MI9 1066 aa8.11□□□□□ -1.11
VPS13A-210ENST00000471439 SENP2Q9HC62 589 aa8.11□□□□□ -1.11
VPS13A-210ENST00000471439 CDV3Q9UKY7 258 aaKnown RBP8.11□□□□□ -1.11
VPS13A-210ENST00000471439 GTF3C3Q9Y5Q9 886 aa8.11□□□□□ -1.11
VPS13A-210ENST00000471439 ABL2P42684 1182 aa8.1□□□□□ -1.11
VPS13A-210ENST00000471439 LCE2CQ5TA81 110 aa8.1□□□□□ -1.11
VPS13A-210ENST00000471439 ATAD2BQ9ULI0 1458 aa8.1□□□□□ -1.11
VPS13A-210ENST00000471439 HMGXB3Q12766 1538 aa8.09□□□□□ -1.11
VPS13A-210ENST00000471439 BMP2P12643 396 aa8.09□□□□□ -1.11
VPS13A-210ENST00000471439 VAC14Q08AM6 782 aa8.09□□□□□ -1.11
VPS13A-210ENST00000471439 KIF13AQ9H1H9 1805 aa8.08□□□□□ -1.12
VPS13A-210ENST00000471439 LILRA1O75019 489 aa8.08□□□□□ -1.12
VPS13A-210ENST00000471439 ADD1P35611 737 aaKnown RBP8.08□□□□□ -1.12
VPS13A-210ENST00000471439 Q6ZVU0 165 aa8.08□□□□□ -1.12
VPS13A-210ENST00000471439 KIFC2Q96AC6 838 aa8.08□□□□□ -1.12
VPS13A-210ENST00000471439 CYLDQ9NQC7 956 aa8.08□□□□□ -1.12
VPS13A-210ENST00000471439 PGPEP1Q9NXJ5 209 aa8.08□□□□□ -1.12
VPS13A-210ENST00000471439 CHD1O14646 1710 aa8.08□□□□□ -1.12
VPS13A-210ENST00000471439 APBB1O00213 710 aa8.07□□□□□ -1.12
VPS13A-210ENST00000471439 VEGFBP49765 207 aa8.07□□□□□ -1.12
VPS13A-210ENST00000471439 RELBQ01201 579 aa8.07□□□□□ -1.12
VPS13A-210ENST00000471439 SCTRP47872 440 aa8.06□□□□□ -1.12
VPS13A-210ENST00000471439 DHX9Q08211 1270 aaKnown RBP8.06□□□□□ -1.12
VPS13A-210ENST00000471439 SCARF1Q14162 830 aa8.06□□□□□ -1.12
VPS13A-210ENST00000471439 LCE2AQ5TA79 106 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-210ENST00000471439 KDF1Q8NAX2 398 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms