RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 DESI1Q6ICB0 168 aa8.77□□□□□ -1.01
SYNE1-219ENST00000469439 CYB5RLQ6IPT4 315 aa8.77□□□□□ -1.01
SYNE1-219ENST00000469439 ZNF775Q96BV0 537 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-219ENST00000469439 LRRC9Q6ZRR7 1453 aa8.77□□□□□ -1.01
SYNE1-219ENST00000469439 SLC24A3Q9HC58 644 aa8.76□□□□□ -1.01
SYNE1-219ENST00000469439 TROQ12816 1431 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-219ENST00000469439 PCF11O94913 1555 aaKnown RBP8.76□□□□□ -1.01
SYNE1-219ENST00000469439 TIAM1Q13009 1591 aa8.76□□□□□ -1.01
SYNE1-219ENST00000469439 NUP153P49790 1475 aaKnown RBP8.76□□□□□ -1.01
SYNE1-219ENST00000469439 EHBP1L1Q8N3D4 1523 aa8.75□□□□□ -1.01
SYNE1-219ENST00000469439 KDM5BQ9UGL1 1544 aa8.75□□□□□ -1.01
SYNE1-219ENST00000469439 AXIN1O15169 862 aa8.75□□□□□ -1.01
SYNE1-219ENST00000469439 SPTLC1O15269 473 aa8.75□□□□□ -1.01
SYNE1-219ENST00000469439 J3QL48 77 aa8.74□□□□□ -1.01
SYNE1-219ENST00000469439 EVA1BQ9NVM1 165 aa8.74□□□□□ -1.01
SYNE1-219ENST00000469439 DACH1Q9UI36 760 aa8.74□□□□□ -1.01
SYNE1-219ENST00000469439 PCDHB15Q9Y5E8 787 aa8.74□□□□□ -1.01
SYNE1-219ENST00000469439 ATP10BO94823 1461 aa8.74□□□□□ -1.01
SYNE1-219ENST00000469439 CCNB3Q8WWL7 1395 aa8.73□□□□□ -1.01
SYNE1-219ENST00000469439 UNC93B1Q9H1C4 597 aa8.73□□□□□ -1.01
SYNE1-219ENST00000469439 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.73□□□□□ -1.01
SYNE1-219ENST00000469439 CFAP99D6REC4 459 aa8.72□□□□□ -1.01
SYNE1-219ENST00000469439 HRCP23327 699 aa8.72□□□□□ -1.01
SYNE1-219ENST00000469439 SH3BP2P78314 561 aa8.72□□□□□ -1.01
SYNE1-219ENST00000469439 KCNH2Q12809 1159 aa8.72□□□□□ -1.01
SYNE1-219ENST00000469439 PRPF38BQ5VTL8 546 aaKnown RBP8.72□□□□□ -1.01
SYNE1-219ENST00000469439 RIC3Q7Z5B4 369 aa8.72□□□□□ -1.01
SYNE1-219ENST00000469439 ZBTB3Q9H5J0 574 aa8.72□□□□□ -1.01
SYNE1-219ENST00000469439 MIA2Q96PC5 1412 aa8.71□□□□□ -1.01
SYNE1-219ENST00000469439 SIAH2O43255 324 aa8.71□□□□□ -1.02
SYNE1-219ENST00000469439 KANK4Q5T7N3 995 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-219ENST00000469439 CFDP1Q9UEE9 299 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-219ENST00000469439 CFAP43Q8NDM7 1665 aa8.7□□□□□ -1.02
SYNE1-219ENST00000469439 EFCAB2Q5VUJ9 269 aa8.7□□□□□ -1.02
SYNE1-219ENST00000469439 MYSM1Q5VVJ2 828 aa8.7□□□□□ -1.02
SYNE1-219ENST00000469439 EHBP1Q8NDI1 1231 aa8.7□□□□□ -1.02
SYNE1-219ENST00000469439 HPS1Q92902 700 aa8.7□□□□□ -1.02
SYNE1-219ENST00000469439 PHLDB1Q86UU1 1377 aa8.7□□□□□ -1.02
SYNE1-219ENST00000469439 WDR7Q9Y4E6 1490 aa8.7□□□□□ -1.02
SYNE1-219ENST00000469439 SUPT6HQ7KZ85 1726 aaKnown RBP8.69□□□□□ -1.02
SYNE1-219ENST00000469439 ARID3CA6NKF2 412 aa8.69□□□□□ -1.02
SYNE1-219ENST00000469439 TUSC1Q2TAM9 212 aa8.69□□□□□ -1.02
SYNE1-219ENST00000469439 LYPD8Q6UX82 237 aa8.69□□□□□ -1.02
SYNE1-219ENST00000469439 CABLES1Q8TDN4 633 aa8.69□□□□□ -1.02
SYNE1-219ENST00000469439 GMPR2Q9P2T1 348 aaKnown RBP8.69□□□□□ -1.02
SYNE1-219ENST00000469439 LIMD1Q9UGP4 676 aa8.69□□□□□ -1.02
SYNE1-219ENST00000469439 ERCC6L2Q5T890 1561 aa8.69□□□□□ -1.02
SYNE1-219ENST00000469439 RIMBP3CA6NJZ7 1639 aa8.69□□□□□ -1.02
SYNE1-219ENST00000469439 RIMBP3BA6NNM3 1639 aa8.69□□□□□ -1.02
SYNE1-219ENST00000469439 RIMBP3Q9UFD9 1639 aa8.69□□□□□ -1.02
SYNE1-219ENST00000469439 ALDH1A1P00352 501 aa8.68□□□□□ -1.02
SYNE1-219ENST00000469439 LINC01559Q495D7 138 aa8.68□□□□□ -1.02
SYNE1-219ENST00000469439 MYOM3Q5VTT5 1437 aa8.68□□□□□ -1.02
SYNE1-219ENST00000469439 PLEKHH2Q8IVE3 1493 aa8.68□□□□□ -1.02
SYNE1-219ENST00000469439 CDK13Q14004 1512 aaKnown RBP8.68□□□□□ -1.02
SYNE1-219ENST00000469439 KIF14Q15058 1648 aa8.68□□□□□ -1.02
SYNE1-219ENST00000469439 F12P00748 615 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-219ENST00000469439 TSPY4P0CV99 314 aa8.67□□□□□ -1.02
SYNE1-219ENST00000469439 TSPY10P0CW01 314 aa8.67□□□□□ -1.02
SYNE1-219ENST00000469439 NCOA2Q15596 1464 aa8.67□□□□□ -1.02
SYNE1-219ENST00000469439 CSPP1Q1MSJ5 1256 aa8.67□□□□□ -1.02
SYNE1-219ENST00000469439 ASXL2Q76L83 1435 aa8.67□□□□□ -1.02
SYNE1-219ENST00000469439 ZNF511Q8NB15 262 aa8.67□□□□□ -1.02
SYNE1-219ENST00000469439 BAP1Q92560 729 aa8.67□□□□□ -1.02
SYNE1-219ENST00000469439 ATP13A2Q9NQ11 1180 aa8.67□□□□□ -1.02
SYNE1-219ENST00000469439 MAPKBP1O60336 1514 aa8.66□□□□□ -1.02
SYNE1-219ENST00000469439 FAM50AQ14320 339 aaKnown RBP8.66□□□□□ -1.02
SYNE1-219ENST00000469439 QPCTQ16769 361 aa8.66□□□□□ -1.02
SYNE1-219ENST00000469439 RRBP1Q9P2E9 1410 aaKnown RBP8.65□□□□□ -1.02
SYNE1-219ENST00000469439 CTHP32929 405 aa8.65□□□□□ -1.02
SYNE1-219ENST00000469439 PPARGC1BQ86YN6 1023 aaKnown RBP8.65□□□□□ -1.02
SYNE1-219ENST00000469439 MAP10Q9P2G4 905 aa8.65□□□□□ -1.02
SYNE1-219ENST00000469439 ADCY10Q96PN6 1610 aa8.65□□□□□ -1.03
SYNE1-219ENST00000469439 FGD6Q6ZV73 1430 aa8.64□□□□□ -1.03
SYNE1-219ENST00000469439 LILRB3O75022 631 aa8.64□□□□□ -1.03
SYNE1-219ENST00000469439 CLK2P49760 499 aaKnown RBP8.64□□□□□ -1.03
SYNE1-219ENST00000469439 TLL2Q9Y6L7 1015 aa8.64□□□□□ -1.03
SYNE1-219ENST00000469439 ARAP3Q8WWN8 1544 aa8.64□□□□□ -1.03
SYNE1-219ENST00000469439 PLCH2O75038 1416 aa8.63□□□□□ -1.03
SYNE1-219ENST00000469439 ZCCHC11Q5TAX3 1644 aaKnown RBP8.63□□□□□ -1.03
SYNE1-219ENST00000469439 C11orf95C9JLR9 678 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-219ENST00000469439 PER1O15534 1290 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-219ENST00000469439 VARSP26640 1264 aaKnown RBP8.63□□□□□ -1.03
SYNE1-219ENST00000469439 BCANQ96GW7 911 aa8.63□□□□□ -1.03
SYNE1-219ENST00000469439 FAM69CQ0P6D2 419 aa8.62□□□□□ -1.03
SYNE1-219ENST00000469439 MPNDQ8N594 471 aa8.62□□□□□ -1.03
SYNE1-219ENST00000469439 PCGF6Q9BYE7 350 aa8.62□□□□□ -1.03
SYNE1-219ENST00000469439 WASF2Q9Y6W5 498 aa8.62□□□□□ -1.03
SYNE1-219ENST00000469439 ITSN2Q9NZM3 1697 aa8.62□□□□□ -1.03
SYNE1-219ENST00000469439 CD109Q6YHK3 1445 aa8.62□□□□□ -1.03
SYNE1-219ENST00000469439 KIAA1107Q9UPP5 1409 aa8.62□□□□□ -1.03
SYNE1-219ENST00000469439 NUTM2BA6NNL0 878 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-219ENST00000469439 NUTM2EB1AL46 878 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-219ENST00000469439 NUTM2DQ5VT03 806 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-219ENST00000469439 NUTM2AQ8IVF1 878 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-219ENST00000469439 TRIM47Q96LD4 638 aa8.61□□□□□ -1.03
SYNE1-219ENST00000469439 ZNF777Q9ULD5 760 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-219ENST00000469439 TEX14Q8IWB6 1497 aa8.61□□□□□ -1.03
SYNE1-219ENST00000469439 GPATCH8Q9UKJ3 1502 aaKnown RBP8.6□□□□□ -1.03
SYNE1-219ENST00000469439 LCE2AQ5TA79 106 aaPredicted RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms