RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 CCDC116Q8IYX3 515 aa11.4□□□□□ -0.58
SYNE1-218ENST00000468937 TBC1D2BQ9UPU7 963 aa11.4□□□□□ -0.58
SYNE1-218ENST00000468937 NR3C2P08235 984 aa11.39□□□□□ -0.59
SYNE1-218ENST00000468937 DHX9Q08211 1270 aaKnown RBP11.39□□□□□ -0.59
SYNE1-218ENST00000468937 EMILIN1Q9Y6C2 1016 aa11.39□□□□□ -0.59
SYNE1-218ENST00000468937 ZNF787Q6DD87 383 aa11.38□□□□□ -0.59
SYNE1-218ENST00000468937 PCDHB9Q9Y5E1 797 aa11.38□□□□□ -0.59
SYNE1-218ENST00000468937 ZIC2O95409 532 aaPredicted RBP11.37□□□□□ -0.59
SYNE1-218ENST00000468937 TIMP2P16035 220 aa11.37□□□□□ -0.59
SYNE1-218ENST00000468937 TRIM52Q96A61 297 aa11.37□□□□□ -0.59
SYNE1-218ENST00000468937 KLF16Q9BXK1 252 aaPredicted RBP11.37□□□□□ -0.59
SYNE1-218ENST00000468937 ATP13A2Q9NQ11 1180 aa11.37□□□□□ -0.59
SYNE1-218ENST00000468937 GPR37L1O60883 481 aa11.36□□□□□ -0.59
SYNE1-218ENST00000468937 SENP2Q9HC62 589 aa11.36□□□□□ -0.59
SYNE1-218ENST00000468937 GDPD2Q9HCC8 539 aa11.36□□□□□ -0.59
SYNE1-218ENST00000468937 PGPEP1Q9NXJ5 209 aa11.36□□□□□ -0.59
SYNE1-218ENST00000468937 DACH1Q9UI36 760 aa11.36□□□□□ -0.59
SYNE1-218ENST00000468937 SEPT12Q8IYM1 358 aa11.35□□□□□ -0.59
SYNE1-218ENST00000468937 INTS6LQ5JSJ4 861 aaKnown RBP11.34□□□□□ -0.59
SYNE1-218ENST00000468937 PPP1R26Q5T8A7 1209 aaPredicted RBP11.34□□□□□ -0.59
SYNE1-218ENST00000468937 CCDC125Q86Z20 511 aa11.34□□□□□ -0.59
SYNE1-218ENST00000468937 ITPKCQ96DU7 683 aa11.34□□□□□ -0.59
SYNE1-218ENST00000468937 RAD21O60216 631 aa11.33□□□□□ -0.6
SYNE1-218ENST00000468937 ABL2P42684 1182 aa11.33□□□□□ -0.6
SYNE1-218ENST00000468937 WASHC4Q2M389 1173 aa11.33□□□□□ -0.6
SYNE1-218ENST00000468937 WWC1Q8IX03 1113 aa11.33□□□□□ -0.6
SYNE1-218ENST00000468937 ESPNB1AK53 854 aa11.32□□□□□ -0.6
SYNE1-218ENST00000468937 EIF4G2P78344 907 aaKnown RBP eCLIP11.32□□□□□ -0.6
SYNE1-218ENST00000468937 RNF20Q5VTR2 975 aa11.32□□□□□ -0.6
SYNE1-218ENST00000468937 KIFC2Q96AC6 838 aa11.32□□□□□ -0.6
SYNE1-218ENST00000468937 ZFAND3Q9H8U3 227 aa11.32□□□□□ -0.6
SYNE1-218ENST00000468937 GMPR2Q9P2T1 348 aaKnown RBP11.32□□□□□ -0.6
SYNE1-218ENST00000468937 UBTFP17480 764 aaKnown RBP11.31□□□□□ -0.6
SYNE1-218ENST00000468937 C11orf95C9JLR9 678 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-218ENST00000468937 UPP2O95045 317 aa11.3□□□□□ -0.6
SYNE1-218ENST00000468937 IRF5Q13568 498 aa11.3□□□□□ -0.6
SYNE1-218ENST00000468937 SCARF1Q14162 830 aa11.3□□□□□ -0.6
SYNE1-218ENST00000468937 MRPL14Q6P1L8 145 aaKnown RBP11.3□□□□□ -0.6
SYNE1-218ENST00000468937 COG6Q9Y2V7 657 aa11.3□□□□□ -0.6
SYNE1-218ENST00000468937 BMP1P13497 986 aa11.29□□□□□ -0.6
SYNE1-218ENST00000468937 RAB15P59190 212 aa11.29□□□□□ -0.6
SYNE1-218ENST00000468937 GIGYF1O75420 1035 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-218ENST00000468937 TRIM46Q7Z4K8 759 aa11.28□□□□□ -0.6
SYNE1-218ENST00000468937 POTECB2RU33 542 aa11.27□□□□□ -0.61
SYNE1-218ENST00000468937 TRIM47Q96LD4 638 aa11.27□□□□□ -0.61
SYNE1-218ENST00000468937 ERVH48-1M5A8F1 160 aa11.26□□□□□ -0.61
SYNE1-218ENST00000468937 MEIOBQ8N635 442 aa11.26□□□□□ -0.61
SYNE1-218ENST00000468937 TSEN34Q9BSV6 310 aaKnown RBP11.26□□□□□ -0.61
SYNE1-218ENST00000468937 SOX11P35716 441 aa11.25□□□□□ -0.61
SYNE1-218ENST00000468937 VAC14Q08AM6 782 aa11.25□□□□□ -0.61
SYNE1-218ENST00000468937 Q6ZVU0 165 aa11.24□□□□□ -0.61
SYNE1-218ENST00000468937 ZFP42Q96MM3 310 aa11.24□□□□□ -0.61
SYNE1-218ENST00000468937 CEP126Q9P2H0 1117 aa11.24□□□□□ -0.61
SYNE1-218ENST00000468937 LINC00528Q8N1L1 170 aa11.23□□□□□ -0.61
SYNE1-218ENST00000468937 ZNF784Q8NCA9 323 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-218ENST00000468937 PURBQ96QR8 312 aaKnown RBP11.23□□□□□ -0.61
SYNE1-218ENST00000468937 TMPRSS4Q9NRS4 437 aa11.23□□□□□ -0.61
SYNE1-218ENST00000468937 BMP2P12643 396 aa11.22□□□□□ -0.61
SYNE1-218ENST00000468937 SEMA3FQ13275 785 aa11.22□□□□□ -0.61
SYNE1-218ENST00000468937 POM121Q96HA1 1249 aa11.22□□□□□ -0.61
SYNE1-218ENST00000468937 CBLBQ13191 982 aa11.21□□□□□ -0.61
SYNE1-218ENST00000468937 C6orf118Q5T5N4 469 aa11.2□□□□□ -0.62
SYNE1-218ENST00000468937 ESF1Q9H501 851 aaKnown RBP11.2□□□□□ -0.62
SYNE1-218ENST00000468937 SNRPBP14678 240 aaKnown RBP11.19□□□□□ -0.62
SYNE1-218ENST00000468937 SLFNL1Q499Z3 407 aa11.19□□□□□ -0.62
SYNE1-218ENST00000468937 PCDHB11Q9Y5F2 797 aa11.19□□□□□ -0.62
SYNE1-218ENST00000468937 LILRA1O75019 489 aa11.18□□□□□ -0.62
SYNE1-218ENST00000468937 CYLDQ9NQC7 956 aa11.18□□□□□ -0.62
SYNE1-218ENST00000468937 CC2D2BQ6DHV5 1058 aa11.17□□□□□ -0.62
SYNE1-218ENST00000468937 ADH1AP07327 375 aa11.16□□□□□ -0.62
SYNE1-218ENST00000468937 ADD1P35611 737 aaKnown RBP11.15□□□□□ -0.62
SYNE1-218ENST00000468937 ERVK-9P63128 1117 aa11.15□□□□□ -0.62
SYNE1-218ENST00000468937 RELBQ01201 579 aa11.15□□□□□ -0.62
SYNE1-218ENST00000468937 RNF135Q8IUD6 432 aa11.15□□□□□ -0.62
SYNE1-218ENST00000468937 SPINT1O43278 529 aa11.14□□□□□ -0.63
SYNE1-218ENST00000468937 MAN1A2O60476 641 aa11.13□□□□□ -0.63
SYNE1-218ENST00000468937 MYCP01106 439 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-218ENST00000468937 PHTF2Q8N3S3 785 aa11.13□□□□□ -0.63
SYNE1-218ENST00000468937 AGBL1Q96MI9 1066 aa11.13□□□□□ -0.63
SYNE1-218ENST00000468937 ATP5J2-PTCD1G3V325 749 aa11.12□□□□□ -0.63
SYNE1-218ENST00000468937 PTGIRP43119 386 aa11.12□□□□□ -0.63
SYNE1-218ENST00000468937 CLUAP1Q96AJ1 413 aa11.12□□□□□ -0.63
SYNE1-218ENST00000468937 ZNF775Q96BV0 537 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-218ENST00000468937 DOLKQ9UPQ8 538 aa11.12□□□□□ -0.63
SYNE1-218ENST00000468937 SOS2Q07890 1332 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-218ENST00000468937 A6NJR5 290 aa11.11□□□□□ -0.63
SYNE1-218ENST00000468937 TTLL8A6PVC2 850 aa11.11□□□□□ -0.63
SYNE1-218ENST00000468937 MAP7D1Q3KQU3 841 aa11.11□□□□□ -0.63
SYNE1-218ENST00000468937 CYP2U1Q7Z449 544 aa11.11□□□□□ -0.63
SYNE1-218ENST00000468937 PROSER2Q86WR7 435 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-218ENST00000468937 SIRT1Q96EB6 747 aa11.11□□□□□ -0.63
SYNE1-218ENST00000468937 CCDC85AQ96PX6 553 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-218ENST00000468937 ALG2Q9H553 416 aa11.11□□□□□ -0.63
SYNE1-218ENST00000468937 USP4Q13107 963 aa11.1□□□□□ -0.63
SYNE1-218ENST00000468937 ZNF395Q9H8N7 513 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-218ENST00000468937 POLMQ9NP87 494 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-218ENST00000468937 CHIC2Q9UKJ5 165 aa11.09□□□□□ -0.63
SYNE1-218ENST00000468937 SCTRP47872 440 aa11.08□□□□□ -0.64
SYNE1-218ENST00000468937 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.08□□□□□ -0.64
SYNE1-218ENST00000468937 INSM2Q96T92 566 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms