RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 KIAA0232Q92628 1395 aa4.26□□□□□ -1.73
USP40-211ENST00000464956 KCPQ6ZWJ8 1503 aa4.26□□□□□ -1.73
USP40-211ENST00000464956 ATP7BP35670 1465 aa4.25□□□□□ -1.73
USP40-211ENST00000464956 NAIPQ13075 1403 aa4.25□□□□□ -1.73
USP40-211ENST00000464956 MSL1Q68DK7 614 aa4.25□□□□□ -1.73
USP40-211ENST00000464956 CDC42BPGQ6DT37 1551 aa4.25□□□□□ -1.73
USP40-211ENST00000464956 HIRIP3Q9BW71 556 aaPredicted RBP4.25□□□□□ -1.73
USP40-211ENST00000464956 BCS1LQ9Y276 419 aa4.25□□□□□ -1.73
USP40-211ENST00000464956 ANKRD30BQ9BXX2 1392 aa4.25□□□□□ -1.73
USP40-211ENST00000464956 SLC27A3Q5K4L6 730 aa4.24□□□□□ -1.73
USP40-211ENST00000464956 MARCH10Q8NA82 808 aaPredicted RBP4.24□□□□□ -1.73
USP40-211ENST00000464956 RNF181Q9P0P0 153 aa4.24□□□□□ -1.73
USP40-211ENST00000464956 CFAP65Q6ZU64 1925 aaKnown RBP4.24□□□□□ -1.73
USP40-211ENST00000464956 CEP162Q5TB80 1403 aa4.23□□□□□ -1.73
USP40-211ENST00000464956 TMEM88BA6NKF7 163 aa4.23□□□□□ -1.73
USP40-211ENST00000464956 ZC3H6P61129 1189 aaKnown RBP4.23□□□□□ -1.73
USP40-211ENST00000464956 CDCA7Q9BWT1 371 aaPredicted RBP4.23□□□□□ -1.73
USP40-211ENST00000464956 LRRC4BQ9NT99 713 aa4.23□□□□□ -1.73
USP40-211ENST00000464956 GPRASP1Q5JY77 1395 aa4.23□□□□□ -1.73
USP40-211ENST00000464956 TOPAZ1Q8N9V7 1692 aa4.22□□□□□ -1.73
USP40-211ENST00000464956 EEA1Q15075 1411 aa4.22□□□□□ -1.73
USP40-211ENST00000464956 CICQ96RK0 1608 aaPredicted RBP4.22□□□□□ -1.73
USP40-211ENST00000464956 CA12O43570 354 aa4.22□□□□□ -1.73
USP40-211ENST00000464956 DEFB115Q30KQ5 88 aa4.22□□□□□ -1.73
USP40-211ENST00000464956 CHADLQ6NUI6 762 aa4.22□□□□□ -1.73
USP40-211ENST00000464956 WDR33Q9C0J8 1336 aaKnown RBP4.21□□□□□ -1.73
USP40-211ENST00000464956 ZC3H4Q9UPT8 1303 aaKnown RBP4.21□□□□□ -1.73
USP40-211ENST00000464956 PHRF1Q9P1Y6 1649 aaKnown RBP4.21□□□□□ -1.73
USP40-211ENST00000464956 LRRIQ1Q96JM4 1722 aa4.21□□□□□ -1.73
USP40-211ENST00000464956 ABCA3Q99758 1704 aa4.21□□□□□ -1.73
USP40-211ENST00000464956 PAK3O75914 559 aaPredicted RBP4.21□□□□□ -1.74
USP40-211ENST00000464956 FCHSD2O94868 740 aa4.21□□□□□ -1.74
USP40-211ENST00000464956 COL23A1Q86Y22 540 aaPredicted RBP4.21□□□□□ -1.74
USP40-211ENST00000464956 PRDM6Q9NQX0 595 aa4.21□□□□□ -1.74
USP40-211ENST00000464956 NRXN1Q9ULB1 1477 aa4.21□□□□□ -1.74
USP40-211ENST00000464956 KIF1AQ12756 1690 aa4.21□□□□□ -1.74
USP40-211ENST00000464956 GCC2Q8IWJ2 1684 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 GLTPD2A6NH11 291 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 RASSF10A6NK89 507 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 EXOC5O00471 708 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 VGFO15240 615 aaPredicted RBP4.2□□□□□ -1.74
USP40-211ENST00000464956 PLA2G5P39877 138 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 ECE1P42892 770 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 TOM1L2Q6ZVM7 507 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 FLAD1Q8NFF5 587 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 FAM122AQ96E09 287 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 ACSBG1Q96GR2 724 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 SNX27Q96L92 541 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 TSKSQ9UJT2 592 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 PAPPAQ13219 1627 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 NRXN3Q9Y4C0 1643 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 CRB1P82279 1406 aa4.2□□□□□ -1.74
USP40-211ENST00000464956 PEAK1Q9H792 1746 aa4.19□□□□□ -1.74
USP40-211ENST00000464956 COL9A1P20849 921 aa4.19□□□□□ -1.74
USP40-211ENST00000464956 HMGB2P26583 209 aaKnown RBP4.19□□□□□ -1.74
USP40-211ENST00000464956 TGFB2P61812 414 aa4.19□□□□□ -1.74
USP40-211ENST00000464956 PAXIP1Q6ZW49 1069 aaPredicted RBP4.19□□□□□ -1.74
USP40-211ENST00000464956 WAPLQ7Z5K2 1190 aa4.19□□□□□ -1.74
USP40-211ENST00000464956 COL25A1Q9BXS0 654 aaPredicted RBP4.19□□□□□ -1.74
USP40-211ENST00000464956 ABT1Q9ULW3 272 aaKnown RBP4.19□□□□□ -1.74
USP40-211ENST00000464956 USP6P35125 1406 aa4.19□□□□□ -1.74
USP40-211ENST00000464956 GOLGB1Q14789 3259 aaKnown RBP4.18□□□□□ -1.74
USP40-211ENST00000464956 DPY19L2Q6NUT2 758 aa4.18□□□□□ -1.74
USP40-211ENST00000464956 GPR101Q96P66 508 aaPredicted RBP4.18□□□□□ -1.74
USP40-211ENST00000464956 PASKQ96RG2 1323 aa4.18□□□□□ -1.74
USP40-211ENST00000464956 PRR36Q9H6K5 1346 aa4.18□□□□□ -1.74
USP40-211ENST00000464956 ACIN1Q9UKV3 1341 aaKnown RBP4.18□□□□□ -1.74
USP40-211ENST00000464956 ANKRD30AQ9BXX3 1397 aa4.17□□□□□ -1.74
USP40-211ENST00000464956 A0A0G2JLW4 131 aa4.17□□□□□ -1.74
USP40-211ENST00000464956 HOXD11P31277 338 aaPredicted RBP4.17□□□□□ -1.74
USP40-211ENST00000464956 KCNQ4P56696 695 aa4.17□□□□□ -1.74
USP40-211ENST00000464956 GRM1Q13255 1194 aa4.17□□□□□ -1.74
USP40-211ENST00000464956 CAPNS2Q96L46 248 aa4.17□□□□□ -1.74
USP40-211ENST00000464956 STK26Q9P289 416 aa4.17□□□□□ -1.74
USP40-211ENST00000464956 COLQQ9Y215 455 aaPredicted RBP4.17□□□□□ -1.74
USP40-211ENST00000464956 MYOM3Q5VTT5 1437 aa4.17□□□□□ -1.74
USP40-211ENST00000464956 SPATA31E1Q6ZUB1 1445 aa4.17□□□□□ -1.74
USP40-211ENST00000464956 PCNTO95613 3336 aa4.17□□□□□ -1.74
USP40-211ENST00000464956 MINK1Q8N4C8 1332 aaPredicted RBP4.17□□□□□ -1.74
USP40-211ENST00000464956 MEGF6O75095 1541 aa4.16□□□□□ -1.74
USP40-211ENST00000464956 CPDO75976 1380 aa4.16□□□□□ -1.74
USP40-211ENST00000464956 PDE4DIPQ5VU43 2346 aa4.16□□□□□ -1.74
USP40-211ENST00000464956 PARP4Q9UKK3 1724 aaKnown RBP4.16□□□□□ -1.74
USP40-211ENST00000464956 MAP2K2P36507 400 aa4.16□□□□□ -1.74
USP40-211ENST00000464956 LDHDQ86WU2 507 aa4.16□□□□□ -1.74
USP40-211ENST00000464956 NGDNQ8NEJ9 315 aaKnown RBP4.16□□□□□ -1.74
USP40-211ENST00000464956 CCNL1Q9UK58 526 aaPredicted RBP4.16□□□□□ -1.74
USP40-211ENST00000464956 COL5A2P05997 1499 aaPredicted RBP4.16□□□□□ -1.74
USP40-211ENST00000464956 TNRC6CQ9HCJ0 1690 aaKnown RBP4.16□□□□□ -1.74
USP40-211ENST00000464956 COL24A1Q17RW2 1714 aa4.15□□□□□ -1.74
USP40-211ENST00000464956 POTECB2RU33 542 aa4.15□□□□□ -1.75
USP40-211ENST00000464956 DPEP1P16444 411 aa4.15□□□□□ -1.75
USP40-211ENST00000464956 DALRD3Q5D0E6 543 aaKnown RBP4.15□□□□□ -1.75
USP40-211ENST00000464956 NUTM2GQ5VZR2 741 aa4.15□□□□□ -1.75
USP40-211ENST00000464956 DCAF5Q96JK2 942 aa4.15□□□□□ -1.75
USP40-211ENST00000464956 PIM2Q9P1W9 311 aa4.15□□□□□ -1.75
USP40-211ENST00000464956 PLEKHH1Q9ULM0 1364 aa4.14□□□□□ -1.75
USP40-211ENST00000464956 LRRC37A3O60309 1634 aa4.14□□□□□ -1.75
USP40-211ENST00000464956 IQGAP3Q86VI3 1631 aa4.14□□□□□ -1.75
USP40-211ENST00000464956 ANKARQ7Z5J8 1434 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms