RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 SEPT12Q8IYM1 358 aa12.16□□□□□ -0.46
PTCD3-205ENST00000464541 IRX2Q9BZI1 471 aaPredicted RBP12.16□□□□□ -0.46
PTCD3-205ENST00000464541 SEMA3FQ13275 785 aa12.15□□□□□ -0.46
PTCD3-205ENST00000464541 KCTD15Q96SI1 283 aaPredicted RBP12.15□□□□□ -0.46
PTCD3-205ENST00000464541 WASF2Q9Y6W5 498 aa12.15□□□□□ -0.46
PTCD3-205ENST00000464541 GRM5P41594 1212 aa12.14□□□□□ -0.47
PTCD3-205ENST00000464541 ESPNB1AK53 854 aa12.13□□□□□ -0.47
PTCD3-205ENST00000464541 SMPD1P17405 629 aa12.13□□□□□ -0.47
PTCD3-205ENST00000464541 RNF20Q5VTR2 975 aa12.13□□□□□ -0.47
PTCD3-205ENST00000464541 TRIM52Q96A61 297 aa12.13□□□□□ -0.47
PTCD3-205ENST00000464541 ALG2Q9H553 416 aa12.13□□□□□ -0.47
PTCD3-205ENST00000464541 J3QL48 77 aa12.12□□□□□ -0.47
PTCD3-205ENST00000464541 POM121CA8CG34 1229 aa12.11□□□□□ -0.47
PTCD3-205ENST00000464541 DGAT1O75907 488 aa12.11□□□□□ -0.47
PTCD3-205ENST00000464541 FSHRP23945 695 aa12.11□□□□□ -0.47
PTCD3-205ENST00000464541 DHX9Q08211 1270 aaKnown RBP12.11□□□□□ -0.47
PTCD3-205ENST00000464541 CEP126Q9P2H0 1117 aa12.11□□□□□ -0.47
PTCD3-205ENST00000464541 TIMELESSQ9UNS1 1208 aa12.11□□□□□ -0.47
PTCD3-205ENST00000464541 NNTQ13423 1086 aa12.09□□□□□ -0.47
PTCD3-205ENST00000464541 FAM187AA6NFU0 413 aa12.08□□□□□ -0.48
PTCD3-205ENST00000464541 INTS6LQ5JSJ4 861 aaKnown RBP12.08□□□□□ -0.48
PTCD3-205ENST00000464541 CCDC116Q8IYX3 515 aa12.08□□□□□ -0.48
PTCD3-205ENST00000464541 GIGYF1O75420 1035 aaPredicted RBP12.07□□□□□ -0.48
PTCD3-205ENST00000464541 AVPP01185 164 aa12.07□□□□□ -0.48
PTCD3-205ENST00000464541 PKDCCQ504Y2 493 aa12.07□□□□□ -0.48
PTCD3-205ENST00000464541 HDGFL1Q5TGJ6 251 aa12.07□□□□□ -0.48
PTCD3-205ENST00000464541 GLMNQ92990 594 aa12.07□□□□□ -0.48
PTCD3-205ENST00000464541 SLFNL1Q499Z3 407 aa12.06□□□□□ -0.48
PTCD3-205ENST00000464541 EMILIN1Q9Y6C2 1016 aa12.06□□□□□ -0.48
PTCD3-205ENST00000464541 NR3C2P08235 984 aa12.05□□□□□ -0.48
PTCD3-205ENST00000464541 PHTF2Q8N3S3 785 aa12.05□□□□□ -0.48
PTCD3-205ENST00000464541 NFATC2IPQ8NCF5 419 aa12.05□□□□□ -0.48
PTCD3-205ENST00000464541 ADAMTS19Q8TE59 1207 aa12.05□□□□□ -0.48
PTCD3-205ENST00000464541 CTC1Q2NKJ3 1217 aa12.04□□□□□ -0.48
PTCD3-205ENST00000464541 CALR3Q96L12 384 aaKnown RBP12.04□□□□□ -0.48
PTCD3-205ENST00000464541 PGPEP1Q9NXJ5 209 aa12.04□□□□□ -0.48
PTCD3-205ENST00000464541 ZNF777Q9ULD5 760 aaPredicted RBP12.04□□□□□ -0.48
PTCD3-205ENST00000464541 RNF135Q8IUD6 432 aa12.03□□□□□ -0.48
PTCD3-205ENST00000464541 HPS1Q92902 700 aa12.03□□□□□ -0.48
PTCD3-205ENST00000464541 CHIC2Q9UKJ5 165 aa12.03□□□□□ -0.48
PTCD3-205ENST00000464541 SMCPP49901 116 aaPredicted RBP12.02□□□□□ -0.49
PTCD3-205ENST00000464541 PPP1R26Q5T8A7 1209 aaPredicted RBP12.02□□□□□ -0.49
PTCD3-205ENST00000464541 KLF16Q9BXK1 252 aaPredicted RBP12.02□□□□□ -0.49
PTCD3-205ENST00000464541 ERVH48-1M5A8F1 160 aa12.01□□□□□ -0.49
PTCD3-205ENST00000464541 MAP7D1Q3KQU3 841 aa12.01□□□□□ -0.49
PTCD3-205ENST00000464541 CRIPAKQ8N1N5 446 aa12.01□□□□□ -0.49
PTCD3-205ENST00000464541 WDR4P57081 412 aaKnown RBP12□□□□□ -0.49
PTCD3-205ENST00000464541 LZTS3O60299 673 aaPredicted RBP11.99□□□□□ -0.49
PTCD3-205ENST00000464541 TIMP2P16035 220 aa11.98□□□□□ -0.49
PTCD3-205ENST00000464541 RAB15P59190 212 aa11.98□□□□□ -0.49
PTCD3-205ENST00000464541 MYT1Q01538 1121 aa11.97□□□□□ -0.49
PTCD3-205ENST00000464541 DOLKQ9UPQ8 538 aa11.97□□□□□ -0.49
PTCD3-205ENST00000464541 PCDHB11Q9Y5F2 797 aa11.97□□□□□ -0.49
PTCD3-205ENST00000464541 ZIC2O95409 532 aaPredicted RBP11.96□□□□□ -0.49
PTCD3-205ENST00000464541 PLPP7Q8NBV4 271 aa11.96□□□□□ -0.49
PTCD3-205ENST00000464541 ITPKCQ96DU7 683 aa11.96□□□□□ -0.49
PTCD3-205ENST00000464541 CCDC85AQ96PX6 553 aaPredicted RBP11.96□□□□□ -0.49
PTCD3-205ENST00000464541 UCN2Q96RP3 112 aa11.96□□□□□ -0.49
PTCD3-205ENST00000464541 CAPN5O15484 640 aaPredicted RBP11.95□□□□□ -0.5
PTCD3-205ENST00000464541 ERVK-9P63128 1117 aa11.95□□□□□ -0.5
PTCD3-205ENST00000464541 SIRT1Q96EB6 747 aa11.95□□□□□ -0.5
PTCD3-205ENST00000464541 PIK3CDO00329 1044 aa11.94□□□□□ -0.5
PTCD3-205ENST00000464541 AXIN1O15169 862 aa11.94□□□□□ -0.5
PTCD3-205ENST00000464541 ATP9BO43861 1147 aa11.94□□□□□ -0.5
PTCD3-205ENST00000464541 SKIP12755 728 aa11.94□□□□□ -0.5
PTCD3-205ENST00000464541 ZNF784Q8NCA9 323 aaPredicted RBP11.94□□□□□ -0.5
PTCD3-205ENST00000464541 USP4Q13107 963 aa11.93□□□□□ -0.5
PTCD3-205ENST00000464541 CC2D2BQ6DHV5 1058 aa11.93□□□□□ -0.5
PTCD3-205ENST00000464541 TRAF7Q6Q0C0 670 aa11.93□□□□□ -0.5
PTCD3-205ENST00000464541 Q6ZNB5 142 aa11.93□□□□□ -0.5
PTCD3-205ENST00000464541 PLEKHM2Q8IWE5 1019 aa11.93□□□□□ -0.5
PTCD3-205ENST00000464541 TMPRSS4Q9NRS4 437 aa11.93□□□□□ -0.5
PTCD3-205ENST00000464541 SERPINA10Q9UK55 444 aa11.93□□□□□ -0.5
PTCD3-205ENST00000464541 LILRA1O75019 489 aa11.92□□□□□ -0.5
PTCD3-205ENST00000464541 MYCP01106 439 aaPredicted RBP11.92□□□□□ -0.5
PTCD3-205ENST00000464541 Q6ZVU0 165 aa11.92□□□□□ -0.5
PTCD3-205ENST00000464541 PPP1R12CQ9BZL4 782 aa11.92□□□□□ -0.5
PTCD3-205ENST00000464541 ZFAND3Q9H8U3 227 aa11.92□□□□□ -0.5
PTCD3-205ENST00000464541 TBC1D9Q6ZT07 1266 aa11.91□□□□□ -0.5
PTCD3-205ENST00000464541 CCDC97Q96F63 343 aaPredicted RBP11.91□□□□□ -0.5
PTCD3-205ENST00000464541 ESF1Q9H501 851 aaKnown RBP11.91□□□□□ -0.5
PTCD3-205ENST00000464541 PALM3A6NDB9 673 aaPredicted RBP11.9□□□□□ -0.5
PTCD3-205ENST00000464541 USP17L5A8MUK1 530 aa11.9□□□□□ -0.5
PTCD3-205ENST00000464541 EML3Q32P44 896 aa11.9□□□□□ -0.5
PTCD3-205ENST00000464541 MEIOBQ8N635 442 aa11.9□□□□□ -0.5
PTCD3-205ENST00000464541 CYLDQ9NQC7 956 aa11.9□□□□□ -0.5
PTCD3-205ENST00000464541 AAASQ9NRG9 546 aa11.9□□□□□ -0.5
PTCD3-205ENST00000464541 ARID3CA6NKF2 412 aa11.89□□□□□ -0.51
PTCD3-205ENST00000464541 TSGA10IPQ3SY00 556 aa11.89□□□□□ -0.51
PTCD3-205ENST00000464541 CDCA7Q9BWT1 371 aaPredicted RBP11.89□□□□□ -0.51
PTCD3-205ENST00000464541 TFIP11Q9UBB9 837 aaKnown RBP11.89□□□□□ -0.51
PTCD3-205ENST00000464541 ADH1AP07327 375 aa11.88□□□□□ -0.51
PTCD3-205ENST00000464541 MAFBQ9Y5Q3 323 aaPredicted RBP11.88□□□□□ -0.51
PTCD3-205ENST00000464541 USP17L3A6NCW0 530 aa11.87□□□□□ -0.51
PTCD3-205ENST00000464541 USP17L4A6NCW7 530 aa11.87□□□□□ -0.51
PTCD3-205ENST00000464541 OXLD1Q5BKU9 147 aa11.87□□□□□ -0.51
PTCD3-205ENST00000464541 USP17L2Q6R6M4 530 aa11.87□□□□□ -0.51
PTCD3-205ENST00000464541 USP17L1Q7RTZ2 530 aa11.87□□□□□ -0.51
PTCD3-205ENST00000464541 CYP2U1Q7Z449 544 aa11.87□□□□□ -0.51
PTCD3-205ENST00000464541 SCTRP47872 440 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms