RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 WDR17Q8IZU2 1322 aa26.67■■□□□ 1.86
VARS-220ENST00000461874 NFAT5O94916 1531 aa26.67■■□□□ 1.86
VARS-220ENST00000461874 PCGF6Q9BYE7 350 aa26.67■■□□□ 1.86
VARS-220ENST00000461874 TIMELESSQ9UNS1 1208 aa26.67■■□□□ 1.86
VARS-220ENST00000461874 A0A1W2PP64 1363 aa26.67■■□□□ 1.86
VARS-220ENST00000461874 EDC4Q6P2E9 1401 aaKnown RBP26.66■■□□□ 1.86
VARS-220ENST00000461874 CLSPNQ9HAW4 1339 aa26.65■■□□□ 1.86
VARS-220ENST00000461874 TRIM37O94972 964 aa26.65■■□□□ 1.86
VARS-220ENST00000461874 EN1Q05925 392 aaPredicted RBP26.65■■□□□ 1.86
VARS-220ENST00000461874 NINLQ9Y2I6 1382 aa26.65■■□□□ 1.86
VARS-220ENST00000461874 USP47Q96K76 1375 aa26.64■■□□□ 1.86
VARS-220ENST00000461874 DISP2A7MBM2 1401 aa26.64■■□□□ 1.85
VARS-220ENST00000461874 RGPD1P0DJD0 1748 aa26.62■■□□□ 1.85
VARS-220ENST00000461874 CSB-PGBD3P0DP91 1061 aa26.6■■□□□ 1.85
VARS-220ENST00000461874 CARD10Q9BWT7 1032 aa26.6■■□□□ 1.85
VARS-220ENST00000461874 TMF1P82094 1093 aa26.59■■□□□ 1.85
VARS-220ENST00000461874 USP54Q70EL1 1684 aa26.59■■□□□ 1.85
VARS-220ENST00000461874 DDB1Q16531 1140 aa26.58■■□□□ 1.85
VARS-220ENST00000461874 CDCA7Q9BWT1 371 aaPredicted RBP26.58■■□□□ 1.85
VARS-220ENST00000461874 PARP4Q9UKK3 1724 aaKnown RBP26.58■■□□□ 1.85
VARS-220ENST00000461874 ABCC6O95255 1503 aa26.58■■□□□ 1.85
VARS-220ENST00000461874 APBA3O96018 575 aa26.57■■□□□ 1.84
VARS-220ENST00000461874 CAMKK2Q96RR4 588 aa26.57■■□□□ 1.84
VARS-220ENST00000461874 TNS1Q9HBL0 1735 aaKnown RBP26.56■■□□□ 1.84
VARS-220ENST00000461874 C11orf95C9JLR9 678 aaPredicted RBP26.56■■□□□ 1.84
VARS-220ENST00000461874 EZH2Q15910 746 aaKnown RBP26.56■■□□□ 1.84
VARS-220ENST00000461874 OVOS2A0A0J9YW53 1432 aa26.56■■□□□ 1.84
VARS-220ENST00000461874 OVOS2Q6IE36 1432 aa26.56■■□□□ 1.84
VARS-220ENST00000461874 RGPD5Q99666 1765 aa26.53■■□□□ 1.84
VARS-220ENST00000461874 ANKRD36BQ8N2N9 1353 aa26.53■■□□□ 1.84
VARS-220ENST00000461874 OVOS2A0A0G2JMS6 1433 aa26.52■■□□□ 1.84
VARS-220ENST00000461874 ERBB3P21860 1342 aa26.52■■□□□ 1.84
VARS-220ENST00000461874 CCDC7Q96M83 1385 aa26.52■■□□□ 1.84
VARS-220ENST00000461874 PARD3Q8TEW0 1356 aa26.51■■□□□ 1.83
VARS-220ENST00000461874 PSDA5PKW4 1024 aaPredicted RBP26.51■■□□□ 1.83
VARS-220ENST00000461874 CDCA8Q53HL2 280 aa26.51■■□□□ 1.83
VARS-220ENST00000461874 LRRC37A3O60309 1634 aa26.5■■□□□ 1.83
VARS-220ENST00000461874 COG3Q96JB2 828 aa26.5■■□□□ 1.83
VARS-220ENST00000461874 MARCH10Q8NA82 808 aaPredicted RBP26.49■■□□□ 1.83
VARS-220ENST00000461874 ANKRD24Q8TF21 1146 aa26.48■■□□□ 1.83
VARS-220ENST00000461874 NLRP2Q9NX02 1062 aa26.48■■□□□ 1.83
VARS-220ENST00000461874 EXOC5O00471 708 aa26.47■■□□□ 1.83
VARS-220ENST00000461874 PEAK1Q9H792 1746 aa26.47■■□□□ 1.83
VARS-220ENST00000461874 IP6K1Q92551 441 aa26.46■■□□□ 1.83
VARS-220ENST00000461874 LTN1O94822 1766 aa26.45■■□□□ 1.82
VARS-220ENST00000461874 WNK3Q9BYP7 1800 aa26.44■■□□□ 1.82
VARS-220ENST00000461874 FYB1O15117 783 aa26.44■■□□□ 1.82
VARS-220ENST00000461874 R3HDM1Q15032 1099 aaKnown RBP26.44■■□□□ 1.82
VARS-220ENST00000461874 BCL9O00512 1426 aa26.44■■□□□ 1.82
VARS-220ENST00000461874 CCER1Q8TC90 406 aaPredicted RBP26.43■■□□□ 1.82
VARS-220ENST00000461874 MAP3K19Q56UN5 1328 aa26.42■■□□□ 1.82
VARS-220ENST00000461874 FBLN1P23142 703 aa26.42■■□□□ 1.82
VARS-220ENST00000461874 BCL11BQ9C0K0 894 aaPredicted RBP26.42■■□□□ 1.82
VARS-220ENST00000461874 IL2RBP14784 551 aa26.4■■□□□ 1.82
VARS-220ENST00000461874 PTF1AQ7RTS3 328 aa26.4■■□□□ 1.82
VARS-220ENST00000461874 GGNBP2Q9H3C7 697 aa26.4■■□□□ 1.82
VARS-220ENST00000461874 TNS2Q63HR2 1409 aa26.39■■□□□ 1.82
VARS-220ENST00000461874 PLSCR1O15162 318 aa26.39■■□□□ 1.82
VARS-220ENST00000461874 HOXC9P31274 260 aa26.38■■□□□ 1.81
VARS-220ENST00000461874 AMPHP49418 695 aa26.38■■□□□ 1.81
VARS-220ENST00000461874 LTV1Q96GA3 475 aaPredicted RBP26.38■■□□□ 1.81
VARS-220ENST00000461874 CARD14Q9BXL6 1004 aa26.37■■□□□ 1.81
VARS-220ENST00000461874 NBPF14Q5TI25 921 aa26.36■■□□□ 1.81
VARS-220ENST00000461874 RREB1Q92766 1687 aa26.35■■□□□ 1.81
VARS-220ENST00000461874 SBF2Q86WG5 1849 aa26.35■■□□□ 1.81
VARS-220ENST00000461874 RRS1Q15050 365 aaKnown RBP26.34■■□□□ 1.81
VARS-220ENST00000461874 LRP5O75197 1615 aa26.32■■□□□ 1.8
VARS-220ENST00000461874 RTL1A6NKG5 1358 aa26.32■■□□□ 1.8
VARS-220ENST00000461874 NUP188Q5SRE5 1749 aa26.31■■□□□ 1.8
VARS-220ENST00000461874 EIF4G2P78344 907 aaKnown RBP eCLIP26.3■■□□□ 1.8
VARS-220ENST00000461874 NSD3Q9BZ95 1437 aa26.3■■□□□ 1.8
VARS-220ENST00000461874 KCNQ2O43526 872 aa26.29■■□□□ 1.8
VARS-220ENST00000461874 PROM2Q8N271 834 aa26.29■■□□□ 1.8
VARS-220ENST00000461874 MYOM1P52179 1685 aa26.28■■□□□ 1.8
VARS-220ENST00000461874 HSPA5P11021 654 aaKnown RBP26.28■■□□□ 1.8
VARS-220ENST00000461874 RGPD3A6NKT7 1758 aaPredicted RBP26.27■■□□□ 1.8
VARS-220ENST00000461874 RGPD4Q7Z3J3 1758 aa26.27■■□□□ 1.8
VARS-220ENST00000461874 FAM208AQ9UK61 1670 aaKnown RBP26.26■■□□□ 1.79
VARS-220ENST00000461874 ACSBG1Q96GR2 724 aa26.26■■□□□ 1.79
VARS-220ENST00000461874 POLR3GLQ9BT43 218 aa26.25■■□□□ 1.79
VARS-220ENST00000461874 HSP90AB2PQ58FF8 381 aa26.24■■□□□ 1.79
VARS-220ENST00000461874 NBPF6Q5VWK0 638 aa26.24■■□□□ 1.79
VARS-220ENST00000461874 NBPF4Q96M43 638 aa26.24■■□□□ 1.79
VARS-220ENST00000461874 TXNRD1Q16881 649 aa26.23■■□□□ 1.79
VARS-220ENST00000461874 DDX54Q8TDD1 881 aaKnown RBP26.23■■□□□ 1.79
VARS-220ENST00000461874 KIF20BQ96Q89 1820 aa26.23■■□□□ 1.79
VARS-220ENST00000461874 INSRP06213 1382 aa26.22■■□□□ 1.79
VARS-220ENST00000461874 KIF24Q5T7B8 1368 aa26.22■■□□□ 1.79
VARS-220ENST00000461874 ANO8Q9HCE9 1232 aaPredicted RBP26.22■■□□□ 1.79
VARS-220ENST00000461874 FLT4P35916 1363 aa26.21■■□□□ 1.79
VARS-220ENST00000461874 CGNL1Q0VF96 1302 aa26.21■■□□□ 1.79
VARS-220ENST00000461874 SMG6Q86US8 1419 aaKnown RBP26.21■■□□□ 1.79
VARS-220ENST00000461874 NHSQ6T4R5 1651 aa26.19■■□□□ 1.78
VARS-220ENST00000461874 ZCRB1Q8TBF4 217 aaKnown RBP26.19■■□□□ 1.78
VARS-220ENST00000461874 EMILIN1Q9Y6C2 1016 aa26.19■■□□□ 1.78
VARS-220ENST00000461874 USHBP1Q8N6Y0 703 aa26.18■■□□□ 1.78
VARS-220ENST00000461874 MEGF6O75095 1541 aa26.18■■□□□ 1.78
VARS-220ENST00000461874 RGPD2P0DJD1 1756 aa26.15■■□□□ 1.78
VARS-220ENST00000461874 RAPGEF4Q8WZA2 1011 aa26.15■■□□□ 1.78
VARS-220ENST00000461874 PANK3Q9H999 370 aa26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms