RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CDC42BPBQ9Y5S2 1711 aa8.48□□□□□ -1.05
SYNE1-216ENST00000461872 RAB11FIP3O75154 756 aa8.48□□□□□ -1.05
SYNE1-216ENST00000461872 BCL11BQ9C0K0 894 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-216ENST00000461872 MADDQ8WXG6 1647 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 RRP7AQ9Y3A4 280 aaKnown RBP8.47□□□□□ -1.05
SYNE1-216ENST00000461872 CCDC192P0DO97 292 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 EXOSC9Q06265 439 aaKnown RBP8.47□□□□□ -1.05
SYNE1-216ENST00000461872 CREBRFQ8IUR6 639 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 EID1Q9Y6B2 187 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 TRIM6-TRIM34B2RNG4 842 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 TWISTNBQ3B726 338 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-216ENST00000461872 GOLGA6L1Q8N7Z2 621 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 LNPKQ9C0E8 428 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 SSH2Q76I76 1423 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 TSPYL1Q9H0U9 437 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 CCDC30Q5VVM6 783 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 GNAI2P04899 355 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 TEX35Q5T0J7 233 aa8.47□□□□□ -1.05
SYNE1-216ENST00000461872 AOX1Q06278 1338 aa8.46□□□□□ -1.05
SYNE1-216ENST00000461872 RAB3GAP1Q15042 981 aa8.46□□□□□ -1.05
SYNE1-216ENST00000461872 MED14O60244 1454 aa8.46□□□□□ -1.05
SYNE1-216ENST00000461872 IQGAP1P46940 1657 aa8.46□□□□□ -1.05
SYNE1-216ENST00000461872 CNTROBQ8N137 903 aa8.46□□□□□ -1.05
SYNE1-216ENST00000461872 BABAM1Q9NWV8 329 aa8.46□□□□□ -1.06
SYNE1-216ENST00000461872 NOB1Q9ULX3 412 aaKnown RBP8.46□□□□□ -1.06
SYNE1-216ENST00000461872 SMC3Q9UQE7 1217 aa8.46□□□□□ -1.06
SYNE1-216ENST00000461872 DDX58O95786 925 aaKnown RBP8.46□□□□□ -1.06
SYNE1-216ENST00000461872 SPRYD3Q8NCJ5 442 aa8.46□□□□□ -1.06
SYNE1-216ENST00000461872 VIRMAQ69YN4 1812 aaKnown RBP8.46□□□□□ -1.06
SYNE1-216ENST00000461872 KRT32Q14532 448 aa8.46□□□□□ -1.06
SYNE1-216ENST00000461872 FAM193AP78312 1265 aa8.45□□□□□ -1.06
SYNE1-216ENST00000461872 SASS6Q6UVJ0 657 aa8.45□□□□□ -1.06
SYNE1-216ENST00000461872 USP32Q8NFA0 1604 aa8.45□□□□□ -1.06
SYNE1-216ENST00000461872 MAP3K4Q9Y6R4 1608 aa8.45□□□□□ -1.06
SYNE1-216ENST00000461872 TRIM27P14373 513 aa8.45□□□□□ -1.06
SYNE1-216ENST00000461872 YEATS2Q9ULM3 1422 aa8.45□□□□□ -1.06
SYNE1-216ENST00000461872 SSH1Q8WYL5 1049 aa8.45□□□□□ -1.06
SYNE1-216ENST00000461872 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.45□□□□□ -1.06
SYNE1-216ENST00000461872 TPM1P09493 284 aa8.45□□□□□ -1.06
SYNE1-216ENST00000461872 NEO1Q92859 1461 aa8.45□□□□□ -1.06
SYNE1-216ENST00000461872 CPLX2Q6PUV4 134 aaKnown RBP8.44□□□□□ -1.06
SYNE1-216ENST00000461872 BCL2L13Q9BXK5 485 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 SCAND2PQ9GZW5 306 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-216ENST00000461872 NOL10Q9BSC4 688 aaKnown RBP8.44□□□□□ -1.06
SYNE1-216ENST00000461872 NOS1P29475 1434 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-216ENST00000461872 EFCAB6Q5THR3 1501 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 LMTK2Q8IWU2 1503 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 NEXNQ0ZGT2 675 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 MCTP1Q6DN14 999 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 C20orf194Q5TEA3 1177 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 AFAP1Q8N556 730 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 TNPO1Q92973 898 aaKnown RBP8.44□□□□□ -1.06
SYNE1-216ENST00000461872 PRKAR2BP31323 418 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 LRRCC1Q9C099 1032 aa8.44□□□□□ -1.06
SYNE1-216ENST00000461872 DHX16O60231 1041 aaKnown RBP8.43□□□□□ -1.06
SYNE1-216ENST00000461872 TUBB4BP68371 445 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 BECN2A8MW95 431 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 VSIG10Q8N0Z9 540 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 ACBD3Q9H3P7 528 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 ARHGAP31Q2M1Z3 1444 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 CCDC183Q5T5S1 534 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 CTAGE5O15320 804 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 ZFYVE16Q7Z3T8 1539 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 ANO2Q9NQ90 1003 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 SENP3-EIF4A1A0A087X0R7 540 aa8.43□□□□□ -1.06
SYNE1-216ENST00000461872 XRCC6P12956 609 aaKnown RBP eCLIP8.43□□□□□ -1.06
SYNE1-216ENST00000461872 ZNF445P59923 1031 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 KRT85P78386 507 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 CCDC73Q6ZRK6 1079 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 USP25Q9UHP3 1055 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 SLC12A5Q9H2X9 1139 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 CWC15Q9P013 229 aaKnown RBP8.42□□□□□ -1.06
SYNE1-216ENST00000461872 CFAP45Q9UL16 551 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 FSD2A1L4K1 749 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 OFD1O75665 1012 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 TMEM57Q8N5G2 664 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 UBTFL1P0CB47 393 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-216ENST00000461872 PLCB2Q00722 1185 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 STK26Q9P289 416 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 KIAA0232Q92628 1395 aa8.42□□□□□ -1.06
SYNE1-216ENST00000461872 AMPHP49418 695 aa8.41□□□□□ -1.06
SYNE1-216ENST00000461872 JMYQ8N9B5 988 aa8.41□□□□□ -1.06
SYNE1-216ENST00000461872 ZNF396Q96N95 335 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-216ENST00000461872 PPIP5K1Q6PFW1 1433 aa8.41□□□□□ -1.06
SYNE1-216ENST00000461872 CLASRPQ8N2M8 674 aaKnown RBP8.41□□□□□ -1.06
SYNE1-216ENST00000461872 PRKCSHP14314 528 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-216ENST00000461872 NEK4P51957 841 aa8.41□□□□□ -1.06
SYNE1-216ENST00000461872 ZBTB40Q9NUA8 1239 aa8.41□□□□□ -1.06
SYNE1-216ENST00000461872 ERVK-7P63135 1459 aa8.41□□□□□ -1.06
SYNE1-216ENST00000461872 PIP4K2AP48426 406 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-216ENST00000461872 TICAM2Q86XR7 235 aa8.41□□□□□ -1.06
SYNE1-216ENST00000461872 ATP7BP35670 1465 aa8.41□□□□□ -1.06
SYNE1-216ENST00000461872 RTL1A6NKG5 1358 aa8.41□□□□□ -1.06
SYNE1-216ENST00000461872 TTC22Q5TAA0 569 aa8.4□□□□□ -1.06
SYNE1-216ENST00000461872 PKNOX2Q96KN3 472 aa8.4□□□□□ -1.06
SYNE1-216ENST00000461872 CCDC61Q9Y6R9 512 aa8.4□□□□□ -1.06
SYNE1-216ENST00000461872 H3BQV1 296 aa8.4□□□□□ -1.06
SYNE1-216ENST00000461872 IFFO2Q5TF58 517 aa8.4□□□□□ -1.06
SYNE1-216ENST00000461872 HECW2Q9P2P5 1572 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms