RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 NUTM2AQ8IVF1 878 aaPredicted RBP12.24□□□□□ -0.45
USP54-208ENST00000461520 SNIP1Q8TAD8 396 aaKnown RBP12.24□□□□□ -0.45
USP54-208ENST00000461520 FAM117AQ9C073 453 aa12.24□□□□□ -0.45
USP54-208ENST00000461520 UNC93B1Q9H1C4 597 aa12.24□□□□□ -0.45
USP54-208ENST00000461520 GLI2P10070 1586 aa12.23□□□□□ -0.45
USP54-208ENST00000461520 KDM5BQ9UGL1 1544 aa12.23□□□□□ -0.45
USP54-208ENST00000461520 LILRB3O75022 631 aa12.23□□□□□ -0.45
USP54-208ENST00000461520 CLK2P49760 499 aaKnown RBP12.23□□□□□ -0.45
USP54-208ENST00000461520 RSPH6AQ9H0K4 717 aa12.23□□□□□ -0.45
USP54-208ENST00000461520 GOLGA3Q08378 1498 aa12.22□□□□□ -0.45
USP54-208ENST00000461520 J3QL48 77 aa12.22□□□□□ -0.45
USP54-208ENST00000461520 TUSC1Q2TAM9 212 aa12.22□□□□□ -0.45
USP54-208ENST00000461520 RTL5Q5HYW3 569 aaPredicted RBP12.22□□□□□ -0.45
USP54-208ENST00000461520 TSC1Q92574 1164 aa12.22□□□□□ -0.45
USP54-208ENST00000461520 AAASQ9NRG9 546 aa12.22□□□□□ -0.45
USP54-208ENST00000461520 CTTNBP2Q8WZ74 1663 aa12.22□□□□□ -0.45
USP54-208ENST00000461520 SMPD1P17405 629 aa12.21□□□□□ -0.45
USP54-208ENST00000461520 CTHP32929 405 aa12.21□□□□□ -0.45
USP54-208ENST00000461520 SH3BP2P78314 561 aa12.21□□□□□ -0.45
USP54-208ENST00000461520 LINC01559Q495D7 138 aa12.21□□□□□ -0.45
USP54-208ENST00000461520 ZNF787Q6DD87 383 aa12.21□□□□□ -0.45
USP54-208ENST00000461520 BAP1Q92560 729 aa12.21□□□□□ -0.45
USP54-208ENST00000461520 PER1O15534 1290 aaPredicted RBP12.2□□□□□ -0.46
USP54-208ENST00000461520 ADGRL1O94910 1474 aa12.19□□□□□ -0.46
USP54-208ENST00000461520 MAP3K4Q9Y6R4 1608 aa12.19□□□□□ -0.46
USP54-208ENST00000461520 AVPP01185 164 aa12.18□□□□□ -0.46
USP54-208ENST00000461520 EHBP1Q8NDI1 1231 aa12.18□□□□□ -0.46
USP54-208ENST00000461520 MAP10Q9P2G4 905 aa12.18□□□□□ -0.46
USP54-208ENST00000461520 ZCCHC11Q5TAX3 1644 aaKnown RBP12.18□□□□□ -0.46
USP54-208ENST00000461520 EPRSP07814 1512 aaKnown RBP12.17□□□□□ -0.46
USP54-208ENST00000461520 POTECB2RU33 542 aa12.17□□□□□ -0.46
USP54-208ENST00000461520 DACH1Q9UI36 760 aa12.17□□□□□ -0.46
USP54-208ENST00000461520 COL17A1Q9UMD9 1497 aaPredicted RBP12.16□□□□□ -0.46
USP54-208ENST00000461520 PLEKHG3A1L390 1219 aa12.16□□□□□ -0.46
USP54-208ENST00000461520 DDRGK1Q96HY6 314 aa12.16□□□□□ -0.46
USP54-208ENST00000461520 EEA1Q15075 1411 aa12.15□□□□□ -0.46
USP54-208ENST00000461520 SIAH2O43255 324 aa12.15□□□□□ -0.46
USP54-208ENST00000461520 F12P00748 615 aaPredicted RBP12.15□□□□□ -0.46
USP54-208ENST00000461520 FAM9AQ8IZU1 332 aaPredicted RBP12.15□□□□□ -0.46
USP54-208ENST00000461520 PROCA1Q8NCQ7 364 aaPredicted RBP12.15□□□□□ -0.46
USP54-208ENST00000461520 ABCA8O94911 1581 aa12.14□□□□□ -0.47
USP54-208ENST00000461520 AXIN1O15169 862 aa12.14□□□□□ -0.47
USP54-208ENST00000461520 ALDH1A1P00352 501 aa12.14□□□□□ -0.47
USP54-208ENST00000461520 SKIV2LQ15477 1246 aaKnown RBP12.14□□□□□ -0.47
USP54-208ENST00000461520 ZNF511Q8NB15 262 aa12.14□□□□□ -0.47
USP54-208ENST00000461520 HPS1Q92902 700 aa12.14□□□□□ -0.47
USP54-208ENST00000461520 TEX14Q8IWB6 1497 aa12.14□□□□□ -0.47
USP54-208ENST00000461520 WDR7Q9Y4E6 1490 aa12.14□□□□□ -0.47
USP54-208ENST00000461520 SH3D19Q5HYK7 790 aa12.13□□□□□ -0.47
USP54-208ENST00000461520 FBXO31Q5XUX0 539 aaPredicted RBP12.13□□□□□ -0.47
USP54-208ENST00000461520 CRIPAKQ8N1N5 446 aa12.13□□□□□ -0.47
USP54-208ENST00000461520 ATP1B4Q9UN42 357 aaPredicted RBP12.13□□□□□ -0.47
USP54-208ENST00000461520 HELBQ8NG08 1087 aaPredicted RBP12.11□□□□□ -0.47
USP54-208ENST00000461520 HECW2Q9P2P5 1572 aa12.1□□□□□ -0.47
USP54-208ENST00000461520 CTC1Q2NKJ3 1217 aa12.1□□□□□ -0.47
USP54-208ENST00000461520 SMCPP49901 116 aaPredicted RBP12.09□□□□□ -0.47
USP54-208ENST00000461520 CTDSPL2Q05D32 466 aa12.09□□□□□ -0.47
USP54-208ENST00000461520 FOXJ1Q92949 421 aa12.09□□□□□ -0.47
USP54-208ENST00000461520 NEUROD2Q15784 382 aa12.08□□□□□ -0.48
USP54-208ENST00000461520 SAMD9Q5K651 1589 aa12.08□□□□□ -0.48
USP54-208ENST00000461520 CFAP43Q8NDM7 1665 aa12.07□□□□□ -0.48
USP54-208ENST00000461520 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.07□□□□□ -0.48
USP54-208ENST00000461520 TLL2Q9Y6L7 1015 aa12.07□□□□□ -0.48
USP54-208ENST00000461520 MAGI3Q5TCQ9 1506 aa12.06□□□□□ -0.48
USP54-208ENST00000461520 CD109Q6YHK3 1445 aa12.06□□□□□ -0.48
USP54-208ENST00000461520 VARSP26640 1264 aaKnown RBP12.06□□□□□ -0.48
USP54-208ENST00000461520 WASF2Q9Y6W5 498 aa12.06□□□□□ -0.48
USP54-208ENST00000461520 TPRNQ4KMQ1 711 aa12.05□□□□□ -0.48
USP54-208ENST00000461520 ATP10BO94823 1461 aa12.05□□□□□ -0.48
USP54-208ENST00000461520 GMPR2Q9P2T1 348 aaKnown RBP12.04□□□□□ -0.48
USP54-208ENST00000461520 AGERQ15109 404 aa12.03□□□□□ -0.48
USP54-208ENST00000461520 IL27Q8NEV9 243 aa12.03□□□□□ -0.48
USP54-208ENST00000461520 LRRN4Q8WUT4 740 aa12.03□□□□□ -0.48
USP54-208ENST00000461520 KIF21BO75037 1637 aa12.02□□□□□ -0.49
USP54-208ENST00000461520 ARID3CA6NKF2 412 aa12.02□□□□□ -0.49
USP54-208ENST00000461520 C4orf48Q5BLP8 95 aa12.02□□□□□ -0.49
USP54-208ENST00000461520 PPP2R2DQ66LE6 453 aa12.02□□□□□ -0.49
USP54-208ENST00000461520 ZNF775Q96BV0 537 aaPredicted RBP12.02□□□□□ -0.49
USP54-208ENST00000461520 RAPGEF6Q8TEU7 1601 aa12.01□□□□□ -0.49
USP54-208ENST00000461520 FAM174AQ8TBP5 190 aa12.01□□□□□ -0.49
USP54-208ENST00000461520 ATP13A2Q9NQ11 1180 aa12.01□□□□□ -0.49
USP54-208ENST00000461520 BRPF1P55201 1214 aaPredicted RBP12□□□□□ -0.49
USP54-208ENST00000461520 AP1G2O75843 785 aa11.99□□□□□ -0.49
USP54-208ENST00000461520 RANGAP1P46060 587 aaPredicted RBP11.99□□□□□ -0.49
USP54-208ENST00000461520 ARID5BQ14865 1188 aa11.99□□□□□ -0.49
USP54-208ENST00000461520 ARMC2Q8NEN0 867 aa11.99□□□□□ -0.49
USP54-208ENST00000461520 FHOD3Q2V2M9 1422 aa11.99□□□□□ -0.49
USP54-208ENST00000461520 EFCAB5A4FU69 1503 aa11.98□□□□□ -0.49
USP54-208ENST00000461520 NUP153P49790 1475 aaKnown RBP11.98□□□□□ -0.49
USP54-208ENST00000461520 C11orf95C9JLR9 678 aaPredicted RBP11.98□□□□□ -0.49
USP54-208ENST00000461520 BPHLQ86WA6 291 aaPredicted RBP11.98□□□□□ -0.49
USP54-208ENST00000461520 MPNDQ8N594 471 aa11.98□□□□□ -0.49
USP54-208ENST00000461520 PHLDB1Q86UU1 1377 aa11.97□□□□□ -0.49
USP54-208ENST00000461520 ABCA9Q8IUA7 1624 aa11.97□□□□□ -0.49
USP54-208ENST00000461520 ARAP3Q8WWN8 1544 aa11.96□□□□□ -0.49
USP54-208ENST00000461520 NR6A1Q15406 480 aa11.96□□□□□ -0.49
USP54-208ENST00000461520 CAPN5O15484 640 aaPredicted RBP11.95□□□□□ -0.5
USP54-208ENST00000461520 NNTQ13423 1086 aa11.95□□□□□ -0.5
USP54-208ENST00000461520 NBPF14Q5TI25 921 aa11.95□□□□□ -0.5
USP54-208ENST00000461520 PLEKHD1A6NEE1 506 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms