RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 PRR36Q9H6K5 1346 aa12.6□□□□□ -0.39
HDAC9-220ENST00000461409 VPS72Q15906 364 aa12.59□□□□□ -0.39
HDAC9-220ENST00000461409 FAM163AQ96GL9 167 aaPredicted RBP12.59□□□□□ -0.39
HDAC9-220ENST00000461409 POTEFA5A3E0 1075 aa12.58□□□□□ -0.4
HDAC9-220ENST00000461409 ARHGEF28Q8N1W1 1705 aaKnown RBP12.57□□□□□ -0.4
HDAC9-220ENST00000461409 ABCA3Q99758 1704 aa12.57□□□□□ -0.4
HDAC9-220ENST00000461409 TRPM3Q9HCF6 1732 aaPredicted RBP12.57□□□□□ -0.4
HDAC9-220ENST00000461409 NWD2Q9ULI1 1742 aa12.57□□□□□ -0.4
HDAC9-220ENST00000461409 GLI3P10071 1580 aa12.57□□□□□ -0.4
HDAC9-220ENST00000461409 CCDC9Q9Y3X0 531 aaKnown RBP12.57□□□□□ -0.4
HDAC9-220ENST00000461409 ATP7BP35670 1465 aa12.57□□□□□ -0.4
HDAC9-220ENST00000461409 KIAA1210Q9ULL0 1709 aa12.57□□□□□ -0.4
HDAC9-220ENST00000461409 FAM83GA6ND36 823 aa12.56□□□□□ -0.4
HDAC9-220ENST00000461409 NUDT16Q96DE0 195 aaKnown RBP12.56□□□□□ -0.4
HDAC9-220ENST00000461409 PLCH1Q4KWH8 1693 aa12.56□□□□□ -0.4
HDAC9-220ENST00000461409 SRCAPQ6ZRS2 3230 aa12.55□□□□□ -0.4
HDAC9-220ENST00000461409 ALS2Q96Q42 1657 aa12.55□□□□□ -0.4
HDAC9-220ENST00000461409 ITSN1Q15811 1721 aa12.55□□□□□ -0.4
HDAC9-220ENST00000461409 IER5LQ5T953 404 aa12.55□□□□□ -0.4
HDAC9-220ENST00000461409 SEPT12Q8IYM1 358 aa12.55□□□□□ -0.4
HDAC9-220ENST00000461409 ONECUT3O60422 494 aaPredicted RBP12.54□□□□□ -0.4
HDAC9-220ENST00000461409 CDK19Q9BWU1 502 aa12.54□□□□□ -0.4
HDAC9-220ENST00000461409 BLMP54132 1417 aaPredicted RBP12.54□□□□□ -0.4
HDAC9-220ENST00000461409 PSEN1P49768 467 aa12.53□□□□□ -0.4
HDAC9-220ENST00000461409 PRDM11Q9NQV5 511 aa12.53□□□□□ -0.4
HDAC9-220ENST00000461409 BTG4Q9NY30 223 aa12.53□□□□□ -0.4
HDAC9-220ENST00000461409 COL14A1Q05707 1796 aaKnown RBP12.53□□□□□ -0.4
HDAC9-220ENST00000461409 SF3B2Q13435 895 aaKnown RBP12.52□□□□□ -0.41
HDAC9-220ENST00000461409 POLR3AO14802 1390 aaPredicted RBP12.52□□□□□ -0.41
HDAC9-220ENST00000461409 A0A0G2JS52 829 aa12.51□□□□□ -0.41
HDAC9-220ENST00000461409 PLEKHG3A1L390 1219 aa12.51□□□□□ -0.41
HDAC9-220ENST00000461409 MYT1Q01538 1121 aa12.51□□□□□ -0.41
HDAC9-220ENST00000461409 PDAP1Q13442 181 aaKnown RBP12.51□□□□□ -0.41
HDAC9-220ENST00000461409 NBPF1Q3BBV0 1214 aa12.51□□□□□ -0.41
HDAC9-220ENST00000461409 KRT27Q7Z3Y8 459 aa12.51□□□□□ -0.41
HDAC9-220ENST00000461409 RNF25Q96BH1 459 aaPredicted RBP12.51□□□□□ -0.41
HDAC9-220ENST00000461409 COLQQ9Y215 455 aaPredicted RBP12.51□□□□□ -0.41
HDAC9-220ENST00000461409 CENPJQ9HC77 1338 aaPredicted RBP12.51□□□□□ -0.41
HDAC9-220ENST00000461409 SRPK2P78362 688 aaKnown RBP12.5□□□□□ -0.41
HDAC9-220ENST00000461409 NBPF8Q3BBV2 869 aa12.5□□□□□ -0.41
HDAC9-220ENST00000461409 ACEP12821 1306 aa12.5□□□□□ -0.41
HDAC9-220ENST00000461409 NRAPQ86VF7 1730 aa12.5□□□□□ -0.41
HDAC9-220ENST00000461409 TOPAZ1Q8N9V7 1692 aa12.49□□□□□ -0.41
HDAC9-220ENST00000461409 KIAA0232Q92628 1395 aa12.49□□□□□ -0.41
HDAC9-220ENST00000461409 FAM98CQ17RN3 349 aaKnown RBP12.49□□□□□ -0.41
HDAC9-220ENST00000461409 SPATA31A5Q5VU36 1347 aa12.48□□□□□ -0.41
HDAC9-220ENST00000461409 SPATA31A7Q8IWB4 1347 aa12.48□□□□□ -0.41
HDAC9-220ENST00000461409 L3MBTL2Q969R5 705 aa12.48□□□□□ -0.41
HDAC9-220ENST00000461409 CRYBG1Q9Y4K1 1723 aa12.48□□□□□ -0.41
HDAC9-220ENST00000461409 PPIP5K1Q6PFW1 1433 aa12.47□□□□□ -0.41
HDAC9-220ENST00000461409 BRD4O60885 1362 aaPredicted RBP12.47□□□□□ -0.41
HDAC9-220ENST00000461409 BRWD3Q6RI45 1802 aa12.47□□□□□ -0.41
HDAC9-220ENST00000461409 IRX5P78411 483 aaPredicted RBP12.47□□□□□ -0.41
HDAC9-220ENST00000461409 LCE2DQ5TA82 110 aaPredicted RBP12.47□□□□□ -0.41
HDAC9-220ENST00000461409 ABTB2Q8N961 1025 aa12.47□□□□□ -0.41
HDAC9-220ENST00000461409 NUTM2GQ5VZR2 741 aa12.46□□□□□ -0.41
HDAC9-220ENST00000461409 PHRF1Q9P1Y6 1649 aaKnown RBP12.45□□□□□ -0.42
HDAC9-220ENST00000461409 ZC3H6P61129 1189 aaKnown RBP12.45□□□□□ -0.42
HDAC9-220ENST00000461409 CHRNA2Q15822 529 aa12.45□□□□□ -0.42
HDAC9-220ENST00000461409 CABP2Q9NPB3 220 aa12.45□□□□□ -0.42
HDAC9-220ENST00000461409 CPDO75976 1380 aa12.44□□□□□ -0.42
HDAC9-220ENST00000461409 USP19O94966 1318 aa12.44□□□□□ -0.42
HDAC9-220ENST00000461409 SPATA31A1Q5TZJ5 1347 aa12.44□□□□□ -0.42
HDAC9-220ENST00000461409 EVC2Q86UK5 1308 aa12.44□□□□□ -0.42
HDAC9-220ENST00000461409 RIOK3O14730 519 aaKnown RBP12.44□□□□□ -0.42
HDAC9-220ENST00000461409 BAG6P46379 1132 aa12.44□□□□□ -0.42
HDAC9-220ENST00000461409 DEFB132Q7Z7B7 95 aa12.44□□□□□ -0.42
HDAC9-220ENST00000461409 NLRP13Q86W25 1043 aa12.44□□□□□ -0.42
HDAC9-220ENST00000461409 STRN4Q9NRL3 753 aa12.44□□□□□ -0.42
HDAC9-220ENST00000461409 QRICH2Q9H0J4 1663 aa12.44□□□□□ -0.42
HDAC9-220ENST00000461409 ROCK2O75116 1388 aaKnown RBP12.43□□□□□ -0.42
HDAC9-220ENST00000461409 EVA1CP58658 441 aa12.43□□□□□ -0.42
HDAC9-220ENST00000461409 NEUROD1Q13562 356 aa12.43□□□□□ -0.42
HDAC9-220ENST00000461409 SIN3AQ96ST3 1273 aa12.43□□□□□ -0.42
HDAC9-220ENST00000461409 NRKQ7Z2Y5 1582 aa12.43□□□□□ -0.42
HDAC9-220ENST00000461409 THSD7AQ9UPZ6 1657 aa12.42□□□□□ -0.42
HDAC9-220ENST00000461409 CABP1Q9NZU7 370 aa12.42□□□□□ -0.42
HDAC9-220ENST00000461409 SSH2Q76I76 1423 aa12.42□□□□□ -0.42
HDAC9-220ENST00000461409 TRPM1Q7Z4N2 1603 aa12.41□□□□□ -0.42
HDAC9-220ENST00000461409 ECM2O94769 699 aaPredicted RBP12.41□□□□□ -0.42
HDAC9-220ENST00000461409 GCP02774 474 aa12.41□□□□□ -0.42
HDAC9-220ENST00000461409 PLCG2P16885 1265 aa12.41□□□□□ -0.42
HDAC9-220ENST00000461409 USP6P35125 1406 aa12.41□□□□□ -0.42
HDAC9-220ENST00000461409 BARGINQ6ZT62 677 aa12.4□□□□□ -0.42
HDAC9-220ENST00000461409 NLRP6P59044 892 aa12.39□□□□□ -0.43
HDAC9-220ENST00000461409 FAM196AQ6ZSG2 479 aa12.39□□□□□ -0.43
HDAC9-220ENST00000461409 TCP11L2Q8N4U5 519 aa12.39□□□□□ -0.43
HDAC9-220ENST00000461409 USP35Q9P2H5 1018 aa12.39□□□□□ -0.43
HDAC9-220ENST00000461409 CAMTA1Q9Y6Y1 1673 aa12.38□□□□□ -0.43
HDAC9-220ENST00000461409 DISP2A7MBM2 1401 aa12.38□□□□□ -0.43
HDAC9-220ENST00000461409 GOLGA2Q08379 1002 aa12.38□□□□□ -0.43
HDAC9-220ENST00000461409 FAM182BQ5T319 152 aa12.38□□□□□ -0.43
HDAC9-220ENST00000461409 LARP1Q6PKG0 1096 aaKnown RBP12.38□□□□□ -0.43
HDAC9-220ENST00000461409 SLAIN1Q8ND83 568 aa12.38□□□□□ -0.43
HDAC9-220ENST00000461409 OCEL1Q9H607 264 aa12.38□□□□□ -0.43
HDAC9-220ENST00000461409 THRAP3Q9Y2W1 955 aaKnown RBP12.38□□□□□ -0.43
HDAC9-220ENST00000461409 LMO7Q8WWI1 1683 aa12.38□□□□□ -0.43
HDAC9-220ENST00000461409 RGPD1P0DJD0 1748 aa12.37□□□□□ -0.43
HDAC9-220ENST00000461409 MKRN3Q13064 507 aaKnown RBP12.37□□□□□ -0.43
HDAC9-220ENST00000461409 PDE3BQ13370 1112 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms