RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 ZRANB1Q9UGI0 708 aa15.01□□□□□ -0.01
SYNE2-207ENST00000458046 NSD3Q9BZ95 1437 aa15.01□□□□□ -0.01
SYNE2-207ENST00000458046 RBM33Q96EV2 1170 aaKnown RBP15□□□□□ -0.01
SYNE2-207ENST00000458046 KIAA1210Q9ULL0 1709 aa15□□□□□ -0.01
SYNE2-207ENST00000458046 MROH2AA6NES4 1674 aa15□□□□□ -0.01
SYNE2-207ENST00000458046 RAPGEF3O95398 923 aa15□□□□□ -0.01
SYNE2-207ENST00000458046 POLR3AO14802 1390 aaPredicted RBP14.99□□□□□ -0.01
SYNE2-207ENST00000458046 SPDYE4A6NLX3 237 aa14.99□□□□□ -0.01
SYNE2-207ENST00000458046 C14orf93Q9H972 538 aaKnown RBP14.99□□□□□ -0.01
SYNE2-207ENST00000458046 MTHFSP49914 203 aa14.99□□□□□ -0.01
SYNE2-207ENST00000458046 TCP11L2Q8N4U5 519 aa14.99□□□□□ -0.01
SYNE2-207ENST00000458046 DNAJC2Q99543 621 aaKnown RBP14.99□□□□□ -0.01
SYNE2-207ENST00000458046 EFCAB6Q5THR3 1501 aa14.98□□□□□ -0.01
SYNE2-207ENST00000458046 SPATA32Q96LK8 384 aa14.98□□□□□ -0.01
SYNE2-207ENST00000458046 NGEFQ8N5V2 710 aa14.98□□□□□ -0.01
SYNE2-207ENST00000458046 AGLP35573 1532 aa14.98□□□□□ -0.01
SYNE2-207ENST00000458046 PIP4K2BP78356 416 aa14.97□□□□□ -0.01
SYNE2-207ENST00000458046 PDE3AQ14432 1141 aa14.97□□□□□ -0.01
SYNE2-207ENST00000458046 TMTC2Q8N394 836 aa14.97□□□□□ -0.01
SYNE2-207ENST00000458046 RUNDC1Q96C34 613 aa14.97□□□□□ -0.01
SYNE2-207ENST00000458046 KIF1BO60333 1816 aa14.97□□□□□ -0.01
SYNE2-207ENST00000458046 SPOCK2Q92563 424 aa14.97□□□□□ -0.01
SYNE2-207ENST00000458046 BCL2L13Q9BXK5 485 aa14.97□□□□□ -0.01
SYNE2-207ENST00000458046 LRRC7Q96NW7 1537 aa14.96□□□□□ -0.01
SYNE2-207ENST00000458046 NHSL1Q5SYE7 1610 aa14.96□□□□□ -0.01
SYNE2-207ENST00000458046 ONECUT3O60422 494 aaPredicted RBP14.96□□□□□ -0.02
SYNE2-207ENST00000458046 SAFB2Q14151 953 aaKnown RBP eCLIP14.96□□□□□ -0.02
SYNE2-207ENST00000458046 TNNQ9UQP3 1299 aa14.96□□□□□ -0.02
SYNE2-207ENST00000458046 CGNL1Q0VF96 1302 aa14.96□□□□□ -0.02
SYNE2-207ENST00000458046 SBNO2Q9Y2G9 1366 aa14.96□□□□□ -0.02
SYNE2-207ENST00000458046 NEURL4Q96JN8 1562 aa14.96□□□□□ -0.02
SYNE2-207ENST00000458046 NFKBIBQ15653 356 aa14.95□□□□□ -0.02
SYNE2-207ENST00000458046 NRXN1Q9ULB1 1477 aa14.95□□□□□ -0.02
SYNE2-207ENST00000458046 CFAP65Q6ZU64 1925 aaKnown RBP14.95□□□□□ -0.02
SYNE2-207ENST00000458046 MARCH6O60337 910 aa14.94□□□□□ -0.02
SYNE2-207ENST00000458046 RARSP54136 660 aaKnown RBP14.94□□□□□ -0.02
SYNE2-207ENST00000458046 HSP90AB4PQ58FF6 505 aa14.94□□□□□ -0.02
SYNE2-207ENST00000458046 SIRT1Q96EB6 747 aa14.94□□□□□ -0.02
SYNE2-207ENST00000458046 KDM4CQ9H3R0 1056 aa14.94□□□□□ -0.02
SYNE2-207ENST00000458046 ZMYND10O75800 440 aa14.94□□□□□ -0.02
SYNE2-207ENST00000458046 FOXD4L6Q3SYB3 417 aaPredicted RBP14.94□□□□□ -0.02
SYNE2-207ENST00000458046 FOXD4L3Q6VB84 417 aaPredicted RBP14.94□□□□□ -0.02
SYNE2-207ENST00000458046 KIDINS220Q9ULH0 1771 aa14.94□□□□□ -0.02
SYNE2-207ENST00000458046 SLC52A1Q9NWF4 448 aa14.93□□□□□ -0.02
SYNE2-207ENST00000458046 OS9Q13438 667 aaPredicted RBP14.92□□□□□ -0.02
SYNE2-207ENST00000458046 CABP2Q9NPB3 220 aa14.92□□□□□ -0.02
SYNE2-207ENST00000458046 ZNF518AQ6AHZ1 1483 aa14.92□□□□□ -0.02
SYNE2-207ENST00000458046 U2AF1L5P0DN76 240 aaPredicted RBP14.92□□□□□ -0.02
SYNE2-207ENST00000458046 RLBP1P12271 317 aa14.92□□□□□ -0.02
SYNE2-207ENST00000458046 U2AF1Q01081 240 aaKnown RBP eCLIP14.92□□□□□ -0.02
SYNE2-207ENST00000458046 CFAP53Q96M91 514 aa14.92□□□□□ -0.02
SYNE2-207ENST00000458046 SEC24BO95487 1268 aa14.91□□□□□ -0.02
SYNE2-207ENST00000458046 ADGRB3O60242 1522 aa14.91□□□□□ -0.02
SYNE2-207ENST00000458046 IFT172Q9UG01 1749 aa14.91□□□□□ -0.02
SYNE2-207ENST00000458046 MCCP23508 829 aa14.9□□□□□ -0.02
SYNE2-207ENST00000458046 STK26Q9P289 416 aa14.9□□□□□ -0.02
SYNE2-207ENST00000458046 PCDHB15Q9Y5E8 787 aa14.9□□□□□ -0.02
SYNE2-207ENST00000458046 LMTK2Q8IWU2 1503 aa14.9□□□□□ -0.02
SYNE2-207ENST00000458046 WDR63Q8IWG1 891 aa14.89□□□□□ -0.03
SYNE2-207ENST00000458046 EVC2Q86UK5 1308 aa14.89□□□□□ -0.03
SYNE2-207ENST00000458046 ANKRD13AQ8IZ07 590 aa14.89□□□□□ -0.03
SYNE2-207ENST00000458046 ARIH1Q9Y4X5 557 aaPredicted RBP14.89□□□□□ -0.03
SYNE2-207ENST00000458046 SETBP1Q9Y6X0 1596 aa14.89□□□□□ -0.03
SYNE2-207ENST00000458046 MYO3AQ8NEV4 1616 aa14.89□□□□□ -0.03
SYNE2-207ENST00000458046 RPGRIP1LQ68CZ1 1315 aa14.88□□□□□ -0.03
SYNE2-207ENST00000458046 ZNF772Q68DY9 489 aaPredicted RBP14.88□□□□□ -0.03
SYNE2-207ENST00000458046 FAM117AQ9C073 453 aa14.88□□□□□ -0.03
SYNE2-207ENST00000458046 AMOTL2Q9Y2J4 779 aa14.88□□□□□ -0.03
SYNE2-207ENST00000458046 VGFO15240 615 aaPredicted RBP14.88□□□□□ -0.03
SYNE2-207ENST00000458046 ADGRB1O14514 1584 aa14.87□□□□□ -0.03
SYNE2-207ENST00000458046 USP19O94966 1318 aa14.87□□□□□ -0.03
SYNE2-207ENST00000458046 GSE1Q14687 1217 aa14.87□□□□□ -0.03
SYNE2-207ENST00000458046 PPME1Q9Y570 386 aa14.87□□□□□ -0.03
SYNE2-207ENST00000458046 NINLQ9Y2I6 1382 aa14.86□□□□□ -0.03
SYNE2-207ENST00000458046 U2SURPO15042 1029 aaKnown RBP14.86□□□□□ -0.03
SYNE2-207ENST00000458046 FRAT2O75474 233 aaPredicted RBP14.86□□□□□ -0.03
SYNE2-207ENST00000458046 MAPK8IP3Q9UPT6 1336 aa14.86□□□□□ -0.03
SYNE2-207ENST00000458046 FAM135BQ49AJ0 1406 aa14.86□□□□□ -0.03
SYNE2-207ENST00000458046 SHPRHQ149N8 1683 aa14.86□□□□□ -0.03
SYNE2-207ENST00000458046 QRICH2Q9H0J4 1663 aa14.86□□□□□ -0.03
SYNE2-207ENST00000458046 PMFBP1Q8TBY8 1022 aa14.86□□□□□ -0.03
SYNE2-207ENST00000458046 TSR2Q969E8 191 aaKnown RBP14.86□□□□□ -0.03
SYNE2-207ENST00000458046 GGNBP2Q9H3C7 697 aa14.86□□□□□ -0.03
SYNE2-207ENST00000458046 SRPK2P78362 688 aaKnown RBP14.85□□□□□ -0.03
SYNE2-207ENST00000458046 IDI1Q13907 227 aa14.85□□□□□ -0.03
SYNE2-207ENST00000458046 MYH16Q9H6N6 1097 aa14.85□□□□□ -0.03
SYNE2-207ENST00000458046 SUGT1Q9Y2Z0 365 aa14.85□□□□□ -0.03
SYNE2-207ENST00000458046 A6NJR5 290 aa14.84□□□□□ -0.03
SYNE2-207ENST00000458046 PDZRN3Q9UPQ7 1066 aa14.84□□□□□ -0.03
SYNE2-207ENST00000458046 ZC3H4Q9UPT8 1303 aaKnown RBP14.84□□□□□ -0.03
SYNE2-207ENST00000458046 ANKRD36BQ8N2N9 1353 aa14.84□□□□□ -0.03
SYNE2-207ENST00000458046 PPLO60437 1756 aa14.83□□□□□ -0.04
SYNE2-207ENST00000458046 SPTY2D1Q68D10 685 aaPredicted RBP14.83□□□□□ -0.04
SYNE2-207ENST00000458046 ZNF662Q6ZS27 426 aa14.83□□□□□ -0.04
SYNE2-207ENST00000458046 IPO4Q8TEX9 1081 aaKnown RBP14.83□□□□□ -0.04
SYNE2-207ENST00000458046 MLH3Q9UHC1 1453 aa14.82□□□□□ -0.04
SYNE2-207ENST00000458046 RBM27Q9P2N5 1060 aaKnown RBP14.82□□□□□ -0.04
SYNE2-207ENST00000458046 RWDD1Q9H446 243 aaPredicted RBP14.81□□□□□ -0.04
SYNE2-207ENST00000458046 ABCC3O15438 1527 aa14.81□□□□□ -0.04
SYNE2-207ENST00000458046 MINK1Q8N4C8 1332 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms