RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 CALD1Q05682 793 aaKnown RBP25.1■■□□□ 1.61
SHOX2-203ENST00000441443 ZSCAN23Q3MJ62 389 aa25.1■■□□□ 1.61
SHOX2-203ENST00000441443 WAPLQ7Z5K2 1190 aa25.1■■□□□ 1.61
SHOX2-203ENST00000441443 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.1■■□□□ 1.61
SHOX2-203ENST00000441443 KIF16BQ96L93 1317 aa25.1■■□□□ 1.61
SHOX2-203ENST00000441443 TSPOAP1O95153 1857 aa25.1■■□□□ 1.61
SHOX2-203ENST00000441443 NEXMIFQ5QGS0 1516 aa25.1■■□□□ 1.61
SHOX2-203ENST00000441443 PKP1Q13835 747 aa25.09■■□□□ 1.61
SHOX2-203ENST00000441443 NCBP3Q53F19 620 aaKnown RBP25.09■■□□□ 1.61
SHOX2-203ENST00000441443 IBTKQ9P2D0 1353 aaPredicted RBP25.09■■□□□ 1.61
SHOX2-203ENST00000441443 CLEC17AQ6ZS10 378 aa25.09■■□□□ 1.61
SHOX2-203ENST00000441443 A0A1W2PP64 1363 aa25.08■■□□□ 1.61
SHOX2-203ENST00000441443 ANKRD36BQ8N2N9 1353 aa25.08■■□□□ 1.61
SHOX2-203ENST00000441443 ZNF445P59923 1031 aa25.08■■□□□ 1.61
SHOX2-203ENST00000441443 TULP4Q9NRJ4 1543 aa25.08■■□□□ 1.6
SHOX2-203ENST00000441443 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.07■■□□□ 1.6
SHOX2-203ENST00000441443 CABP1Q9NZU7 370 aa25.07■■□□□ 1.6
SHOX2-203ENST00000441443 MYO3AQ8NEV4 1616 aa25.07■■□□□ 1.6
SHOX2-203ENST00000441443 PRIM1P49642 420 aaKnown RBP25.07■■□□□ 1.6
SHOX2-203ENST00000441443 PLPPR3Q6T4P5 718 aa25.07■■□□□ 1.6
SHOX2-203ENST00000441443 CDK19Q9BWU1 502 aa25.07■■□□□ 1.6
SHOX2-203ENST00000441443 ADGRB2O60241 1585 aa25.06■■□□□ 1.6
SHOX2-203ENST00000441443 ABCC11Q96J66 1382 aa25.06■■□□□ 1.6
SHOX2-203ENST00000441443 PPIP5K1Q6PFW1 1433 aa25.06■■□□□ 1.6
SHOX2-203ENST00000441443 RBM27Q9P2N5 1060 aaKnown RBP25.06■■□□□ 1.6
SHOX2-203ENST00000441443 NOL7Q9UMY1 257 aaKnown RBP25.06■■□□□ 1.6
SHOX2-203ENST00000441443 UQCRHLA0A096LP55 91 aa25.05■■□□□ 1.6
SHOX2-203ENST00000441443 UQCRHP07919 91 aa25.05■■□□□ 1.6
SHOX2-203ENST00000441443 LMBRD1Q9NUN5 540 aa25.05■■□□□ 1.6
SHOX2-203ENST00000441443 TERF2IPQ9NYB0 399 aa25.05■■□□□ 1.6
SHOX2-203ENST00000441443 RICTORQ6R327 1708 aa25.04■■□□□ 1.6
SHOX2-203ENST00000441443 ESF1Q9H501 851 aaKnown RBP25.04■■□□□ 1.6
SHOX2-203ENST00000441443 TERF1P54274 439 aa25.04■■□□□ 1.6
SHOX2-203ENST00000441443 PIK3C2BO00750 1634 aa25.03■■□□□ 1.6
SHOX2-203ENST00000441443 ZBTB7BO15156 539 aaPredicted RBP25.03■■□□□ 1.6
SHOX2-203ENST00000441443 GCC1Q96CN9 775 aa25.03■■□□□ 1.6
SHOX2-203ENST00000441443 ARHGAP31Q2M1Z3 1444 aa25.03■■□□□ 1.6
SHOX2-203ENST00000441443 FYB1O15117 783 aa25.02■■□□□ 1.6
SHOX2-203ENST00000441443 PRPF40AO75400 957 aaKnown RBP25.02■■□□□ 1.6
SHOX2-203ENST00000441443 CHAMP1Q96JM3 812 aa25.02■■□□□ 1.6
SHOX2-203ENST00000441443 MYO5BQ9ULV0 1848 aa25.02■■□□□ 1.6
SHOX2-203ENST00000441443 CDC45O75419 566 aa25.02■■□□□ 1.6
SHOX2-203ENST00000441443 PRDM4Q9UKN5 801 aa25.02■■□□□ 1.6
SHOX2-203ENST00000441443 ZNF500O60304 480 aaPredicted RBP25.01■■□□□ 1.59
SHOX2-203ENST00000441443 SIRT2Q8IXJ6 389 aa25.01■■□□□ 1.59
SHOX2-203ENST00000441443 YTHDC2Q9H6S0 1430 aaKnown RBP25■■□□□ 1.59
SHOX2-203ENST00000441443 HS1BP3Q53T59 392 aa25■■□□□ 1.59
SHOX2-203ENST00000441443 HDGFL2Q7Z4V5 671 aaPredicted RBP25■■□□□ 1.59
SHOX2-203ENST00000441443 PDLIM2Q96JY6 352 aa25■■□□□ 1.59
SHOX2-203ENST00000441443 GSPT1P15170 499 aaKnown RBP24.99■■□□□ 1.59
SHOX2-203ENST00000441443 NUCB2P80303 420 aa24.99■■□□□ 1.59
SHOX2-203ENST00000441443 IL16Q14005 1332 aa24.99■■□□□ 1.59
SHOX2-203ENST00000441443 ALDH1L2Q3SY69 923 aa24.98■■□□□ 1.59
SHOX2-203ENST00000441443 GPT2Q8TD30 523 aa24.98■■□□□ 1.59
SHOX2-203ENST00000441443 ARHGEF28Q8N1W1 1705 aaKnown RBP24.98■■□□□ 1.59
SHOX2-203ENST00000441443 RABEP1Q15276 862 aa24.97■■□□□ 1.59
SHOX2-203ENST00000441443 ZGPATQ8N5A5 531 aaKnown RBP24.97■■□□□ 1.59
SHOX2-203ENST00000441443 ZKSCAN5Q9Y2L8 839 aa24.97■■□□□ 1.59
SHOX2-203ENST00000441443 ZBTB7CA1YPR0 619 aa24.97■■□□□ 1.59
SHOX2-203ENST00000441443 ELL2O00472 640 aaPredicted RBP24.97■■□□□ 1.59
SHOX2-203ENST00000441443 ZC3H13Q5T200 1668 aaKnown RBP24.97■■□□□ 1.59
SHOX2-203ENST00000441443 CYP2E1P05181 493 aaPredicted RBP24.96■■□□□ 1.59
SHOX2-203ENST00000441443 MAP7D2Q96T17 732 aa24.96■■□□□ 1.59
SHOX2-203ENST00000441443 FOXD4L5Q5VV16 416 aaPredicted RBP24.95■■□□□ 1.58
SHOX2-203ENST00000441443 FOXD4L4Q8WXT5 416 aaPredicted RBP24.95■■□□□ 1.58
SHOX2-203ENST00000441443 TXNDC2Q86VQ3 553 aa24.95■■□□□ 1.58
SHOX2-203ENST00000441443 SYCE3A1L190 88 aa24.94■■□□□ 1.58
SHOX2-203ENST00000441443 RNF214Q8ND24 703 aa24.94■■□□□ 1.58
SHOX2-203ENST00000441443 NSFL1CQ9UNZ2 370 aaKnown RBP24.94■■□□□ 1.58
SHOX2-203ENST00000441443 ATAD2Q6PL18 1390 aa24.93■■□□□ 1.58
SHOX2-203ENST00000441443 NCKAP5LQ9HCH0 1330 aa24.93■■□□□ 1.58
SHOX2-203ENST00000441443 PUS7Q96PZ0 661 aaKnown RBP24.93■■□□□ 1.58
SHOX2-203ENST00000441443 TMEM63CQ9P1W3 806 aa24.93■■□□□ 1.58
SHOX2-203ENST00000441443 USP32Q8NFA0 1604 aa24.93■■□□□ 1.58
SHOX2-203ENST00000441443 THUMPD2Q9BTF0 503 aaKnown RBP24.93■■□□□ 1.58
SHOX2-203ENST00000441443 PREX1Q8TCU6 1659 aa24.93■■□□□ 1.58
SHOX2-203ENST00000441443 NSD2O96028 1365 aa24.92■■□□□ 1.58
SHOX2-203ENST00000441443 NUTM2FA1L443 756 aa24.92■■□□□ 1.58
SHOX2-203ENST00000441443 C16orf71Q8IYS4 520 aaPredicted RBP24.92■■□□□ 1.58
SHOX2-203ENST00000441443 TSPYL6Q8N831 410 aa24.92■■□□□ 1.58
SHOX2-203ENST00000441443 PLEKHM2Q8IWE5 1019 aa24.91■■□□□ 1.58
SHOX2-203ENST00000441443 ZDHHC9Q9Y397 364 aa24.91■■□□□ 1.58
SHOX2-203ENST00000441443 MED14O60244 1454 aa24.91■■□□□ 1.58
SHOX2-203ENST00000441443 PTPRMP28827 1452 aa24.91■■□□□ 1.58
SHOX2-203ENST00000441443 USP26Q9BXU7 913 aa24.91■■□□□ 1.58
SHOX2-203ENST00000441443 TMEM131LA2VDJ0 1609 aa24.9■■□□□ 1.58
SHOX2-203ENST00000441443 DIAPH1O60610 1272 aaKnown RBP24.9■■□□□ 1.58
SHOX2-203ENST00000441443 MRPL50Q8N5N7 158 aaKnown RBP24.9■■□□□ 1.58
SHOX2-203ENST00000441443 PRDM10Q9NQV6 1147 aa24.9■■□□□ 1.58
SHOX2-203ENST00000441443 ZFYVE9O95405 1425 aa24.89■■□□□ 1.58
SHOX2-203ENST00000441443 HMOX1P09601 288 aa24.89■■□□□ 1.57
SHOX2-203ENST00000441443 CSPP1Q1MSJ5 1256 aa24.88■■□□□ 1.57
SHOX2-203ENST00000441443 LRSAM1Q6UWE0 723 aa24.88■■□□□ 1.57
SHOX2-203ENST00000441443 DYNC1I1O14576 645 aa24.88■■□□□ 1.57
SHOX2-203ENST00000441443 VAMP4O75379 141 aa24.88■■□□□ 1.57
SHOX2-203ENST00000441443 ZRANB1Q9UGI0 708 aa24.88■■□□□ 1.57
SHOX2-203ENST00000441443 OTUD7AQ8TE49 926 aaPredicted RBP24.86■■□□□ 1.57
SHOX2-203ENST00000441443 CCDC39Q9UFE4 941 aa24.86■■□□□ 1.57
SHOX2-203ENST00000441443 RIMBP3CA6NJZ7 1639 aa24.86■■□□□ 1.57
SHOX2-203ENST00000441443 RIMBP3BA6NNM3 1639 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms