RNA–Protein interactions for RNA: ENST00000425071.5

HDAC9-209, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-209ENST00000425071 RNF20Q5VTR2 975 aa7.89□□□□□ -1.15
HDAC9-209ENST00000425071 PCDHB9Q9Y5E1 797 aa7.89□□□□□ -1.15
HDAC9-209ENST00000425071 VAC14Q08AM6 782 aa7.88□□□□□ -1.15
HDAC9-209ENST00000425071 SEMA3FQ13275 785 aa7.88□□□□□ -1.15
HDAC9-209ENST00000425071 ARID5BQ14865 1188 aa7.88□□□□□ -1.15
HDAC9-209ENST00000425071 KCTD15Q96SI1 283 aaPredicted RBP7.88□□□□□ -1.15
HDAC9-209ENST00000425071 TRAK2O60296 914 aa7.87□□□□□ -1.15
HDAC9-209ENST00000425071 GRM5P41594 1212 aa7.87□□□□□ -1.15
HDAC9-209ENST00000425071 DHX9Q08211 1270 aaKnown RBP7.87□□□□□ -1.15
HDAC9-209ENST00000425071 TLL2Q9Y6L7 1015 aa7.87□□□□□ -1.15
HDAC9-209ENST00000425071 ESPNB1AK53 854 aa7.86□□□□□ -1.15
HDAC9-209ENST00000425071 SMPD1P17405 629 aa7.86□□□□□ -1.15
HDAC9-209ENST00000425071 Q6ZNB5 142 aa7.86□□□□□ -1.15
HDAC9-209ENST00000425071 J3QL48 77 aa7.85□□□□□ -1.15
HDAC9-209ENST00000425071 AVPP01185 164 aa7.85□□□□□ -1.15
HDAC9-209ENST00000425071 PKDCCQ504Y2 493 aa7.85□□□□□ -1.15
HDAC9-209ENST00000425071 ALG2Q9H553 416 aa7.85□□□□□ -1.15
HDAC9-209ENST00000425071 CEP126Q9P2H0 1117 aa7.85□□□□□ -1.15
HDAC9-209ENST00000425071 FAM187AA6NFU0 413 aa7.84□□□□□ -1.15
HDAC9-209ENST00000425071 CTC1Q2NKJ3 1217 aa7.84□□□□□ -1.15
HDAC9-209ENST00000425071 CCDC116Q8IYX3 515 aa7.84□□□□□ -1.15
HDAC9-209ENST00000425071 EMILIN1Q9Y6C2 1016 aa7.84□□□□□ -1.15
HDAC9-209ENST00000425071 FSHRP23945 695 aa7.83□□□□□ -1.16
HDAC9-209ENST00000425071 NNTQ13423 1086 aa7.83□□□□□ -1.16
HDAC9-209ENST00000425071 SMCPP49901 116 aaPredicted RBP7.82□□□□□ -1.16
HDAC9-209ENST00000425071 SLFNL1Q499Z3 407 aa7.82□□□□□ -1.16
HDAC9-209ENST00000425071 INTS6LQ5JSJ4 861 aaKnown RBP7.82□□□□□ -1.16
HDAC9-209ENST00000425071 PGPEP1Q9NXJ5 209 aa7.82□□□□□ -1.16
HDAC9-209ENST00000425071 GIGYF1O75420 1035 aaPredicted RBP7.81□□□□□ -1.16
HDAC9-209ENST00000425071 HDGFL1Q5TGJ6 251 aa7.81□□□□□ -1.16
HDAC9-209ENST00000425071 CRIPAKQ8N1N5 446 aa7.81□□□□□ -1.16
HDAC9-209ENST00000425071 NFATC2IPQ8NCF5 419 aa7.81□□□□□ -1.16
HDAC9-209ENST00000425071 POM121CA8CG34 1229 aa7.8□□□□□ -1.16
HDAC9-209ENST00000425071 LZTS3O60299 673 aaPredicted RBP7.8□□□□□ -1.16
HDAC9-209ENST00000425071 MAP7D1Q3KQU3 841 aa7.8□□□□□ -1.16
HDAC9-209ENST00000425071 CHIC2Q9UKJ5 165 aa7.8□□□□□ -1.16
HDAC9-209ENST00000425071 RNF135Q8IUD6 432 aa7.79□□□□□ -1.16
HDAC9-209ENST00000425071 PHTF2Q8N3S3 785 aa7.79□□□□□ -1.16
HDAC9-209ENST00000425071 HPS1Q92902 700 aa7.79□□□□□ -1.16
HDAC9-209ENST00000425071 GLMNQ92990 594 aa7.79□□□□□ -1.16
HDAC9-209ENST00000425071 CALR3Q96L12 384 aaKnown RBP7.79□□□□□ -1.16
HDAC9-209ENST00000425071 KLF16Q9BXK1 252 aaPredicted RBP7.79□□□□□ -1.16
HDAC9-209ENST00000425071 ERVH48-1M5A8F1 160 aa7.78□□□□□ -1.16
HDAC9-209ENST00000425071 NR3C2P08235 984 aa7.78□□□□□ -1.16
HDAC9-209ENST00000425071 WDR4P57081 412 aaKnown RBP7.78□□□□□ -1.16
HDAC9-209ENST00000425071 PPP1R26Q5T8A7 1209 aaPredicted RBP7.78□□□□□ -1.16
HDAC9-209ENST00000425071 SIRT1Q96EB6 747 aa7.78□□□□□ -1.16
HDAC9-209ENST00000425071 MYT1Q01538 1121 aa7.77□□□□□ -1.17
HDAC9-209ENST00000425071 ZNF777Q9ULD5 760 aaPredicted RBP7.77□□□□□ -1.17
HDAC9-209ENST00000425071 AXIN1O15169 862 aa7.76□□□□□ -1.17
HDAC9-209ENST00000425071 CAPN5O15484 640 aaPredicted RBP7.76□□□□□ -1.17
HDAC9-209ENST00000425071 ZIC2O95409 532 aaPredicted RBP7.76□□□□□ -1.17
HDAC9-209ENST00000425071 TIMP2P16035 220 aa7.76□□□□□ -1.17
HDAC9-209ENST00000425071 ADAMTS19Q8TE59 1207 aa7.76□□□□□ -1.17
HDAC9-209ENST00000425071 USP4Q13107 963 aa7.75□□□□□ -1.17
HDAC9-209ENST00000425071 TRAF7Q6Q0C0 670 aa7.75□□□□□ -1.17
HDAC9-209ENST00000425071 ITPKCQ96DU7 683 aa7.75□□□□□ -1.17
HDAC9-209ENST00000425071 ESF1Q9H501 851 aaKnown RBP7.75□□□□□ -1.17
HDAC9-209ENST00000425071 TIMELESSQ9UNS1 1208 aa7.75□□□□□ -1.17
HDAC9-209ENST00000425071 RAB15P59190 212 aa7.74□□□□□ -1.17
HDAC9-209ENST00000425071 ERVK-9P63128 1117 aa7.74□□□□□ -1.17
HDAC9-209ENST00000425071 CC2D2BQ6DHV5 1058 aa7.74□□□□□ -1.17
HDAC9-209ENST00000425071 Q6ZVU0 165 aa7.74□□□□□ -1.17
HDAC9-209ENST00000425071 PLPP7Q8NBV4 271 aa7.74□□□□□ -1.17
HDAC9-209ENST00000425071 DOLKQ9UPQ8 538 aa7.74□□□□□ -1.17
HDAC9-209ENST00000425071 PCDHB11Q9Y5F2 797 aa7.74□□□□□ -1.17
HDAC9-209ENST00000425071 LCE2BO14633 110 aa7.73□□□□□ -1.17
HDAC9-209ENST00000425071 ATP9BO43861 1147 aa7.73□□□□□ -1.17
HDAC9-209ENST00000425071 MYCP01106 439 aaPredicted RBP7.73□□□□□ -1.17
HDAC9-209ENST00000425071 ZNF784Q8NCA9 323 aaPredicted RBP7.73□□□□□ -1.17
HDAC9-209ENST00000425071 CCDC85AQ96PX6 553 aaPredicted RBP7.73□□□□□ -1.17
HDAC9-209ENST00000425071 AAASQ9NRG9 546 aa7.73□□□□□ -1.17
HDAC9-209ENST00000425071 UPP2O95045 317 aa7.72□□□□□ -1.17
HDAC9-209ENST00000425071 SKIP12755 728 aa7.72□□□□□ -1.17
HDAC9-209ENST00000425071 PLEKHM2Q8IWE5 1019 aa7.72□□□□□ -1.17
HDAC9-209ENST00000425071 TMPRSS4Q9NRS4 437 aa7.72□□□□□ -1.17
HDAC9-209ENST00000425071 SERPINA10Q9UK55 444 aa7.72□□□□□ -1.17
HDAC9-209ENST00000425071 LILRA1O75019 489 aa7.71□□□□□ -1.18
HDAC9-209ENST00000425071 EML3Q32P44 896 aa7.71□□□□□ -1.18
HDAC9-209ENST00000425071 MEIOBQ8N635 442 aa7.71□□□□□ -1.18
HDAC9-209ENST00000425071 TSEN34Q9BSV6 310 aaKnown RBP7.71□□□□□ -1.18
HDAC9-209ENST00000425071 ZFAND3Q9H8U3 227 aa7.71□□□□□ -1.18
HDAC9-209ENST00000425071 CYP2U1Q7Z449 544 aa7.7□□□□□ -1.18
HDAC9-209ENST00000425071 UCN2Q96RP3 112 aa7.7□□□□□ -1.18
HDAC9-209ENST00000425071 PPP1R12CQ9BZL4 782 aa7.7□□□□□ -1.18
HDAC9-209ENST00000425071 USP17L5A8MUK1 530 aa7.69□□□□□ -1.18
HDAC9-209ENST00000425071 PIK3CDO00329 1044 aa7.69□□□□□ -1.18
HDAC9-209ENST00000425071 ADH1AP07327 375 aa7.69□□□□□ -1.18
HDAC9-209ENST00000425071 SCARF1Q14162 830 aa7.69□□□□□ -1.18
HDAC9-209ENST00000425071 CCDC97Q96F63 343 aaPredicted RBP7.69□□□□□ -1.18
HDAC9-209ENST00000425071 CYLDQ9NQC7 956 aa7.69□□□□□ -1.18
HDAC9-209ENST00000425071 NOD1Q9Y239 953 aa7.69□□□□□ -1.18
HDAC9-209ENST00000425071 PALM3A6NDB9 673 aaPredicted RBP7.68□□□□□ -1.18
HDAC9-209ENST00000425071 TSGA10IPQ3SY00 556 aa7.68□□□□□ -1.18
HDAC9-209ENST00000425071 MRPL14Q6P1L8 145 aaKnown RBP7.68□□□□□ -1.18
HDAC9-209ENST00000425071 TBC1D9Q6ZT07 1266 aa7.68□□□□□ -1.18
HDAC9-209ENST00000425071 TRIM50Q86XT4 487 aa7.68□□□□□ -1.18
HDAC9-209ENST00000425071 CDCA7Q9BWT1 371 aaPredicted RBP7.68□□□□□ -1.18
HDAC9-209ENST00000425071 SENP2Q9HC62 589 aa7.68□□□□□ -1.18
HDAC9-209ENST00000425071 TFIP11Q9UBB9 837 aaKnown RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms