RNA–Protein interactions for RNA: ENST00000421756.5

MCF2L-213, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best) BASIC

Gene MCF2L, Length 3,560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-213ENST00000421756 USP35Q9P2H5 1018 aa16.74■□□□□ 0.27
MCF2L-213ENST00000421756 AMOTL2Q9Y2J4 779 aa16.74■□□□□ 0.27
MCF2L-213ENST00000421756 SLC4A2P04920 1241 aa16.74■□□□□ 0.27
MCF2L-213ENST00000421756 MRPL50Q8N5N7 158 aaKnown RBP16.74■□□□□ 0.27
MCF2L-213ENST00000421756 CD163L1Q9NR16 1453 aa16.74■□□□□ 0.27
MCF2L-213ENST00000421756 SETBP1Q9Y6X0 1596 aa16.74■□□□□ 0.27
MCF2L-213ENST00000421756 IQSEC2Q5JU85 1478 aa16.73■□□□□ 0.27
MCF2L-213ENST00000421756 RTF1Q92541 710 aaKnown RBP16.73■□□□□ 0.27
MCF2L-213ENST00000421756 SHPRHQ149N8 1683 aa16.72■□□□□ 0.27
MCF2L-213ENST00000421756 HDGFP51858 240 aaKnown RBP16.72■□□□□ 0.27
MCF2L-213ENST00000421756 IFT172Q9UG01 1749 aa16.72■□□□□ 0.27
MCF2L-213ENST00000421756 ZBTB7BO15156 539 aaPredicted RBP16.71■□□□□ 0.27
MCF2L-213ENST00000421756 HSP90AB1P08238 724 aaKnown RBP16.71■□□□□ 0.27
MCF2L-213ENST00000421756 NOL8Q76FK4 1167 aaKnown RBP16.71■□□□□ 0.27
MCF2L-213ENST00000421756 PUS7Q96PZ0 661 aaKnown RBP16.71■□□□□ 0.27
MCF2L-213ENST00000421756 ALKQ9UM73 1620 aa16.71■□□□□ 0.27
MCF2L-213ENST00000421756 HSCBQ8IWL3 235 aa16.71■□□□□ 0.27
MCF2L-213ENST00000421756 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.71■□□□□ 0.27
MCF2L-213ENST00000421756 EID1Q9Y6B2 187 aa16.71■□□□□ 0.27
MCF2L-213ENST00000421756 TSPYL4Q9UJ04 414 aa16.71■□□□□ 0.26
MCF2L-213ENST00000421756 ARHGEF28Q8N1W1 1705 aaKnown RBP16.7■□□□□ 0.26
MCF2L-213ENST00000421756 ROBO2Q9HCK4 1378 aa16.7■□□□□ 0.26
MCF2L-213ENST00000421756 NINLQ9Y2I6 1382 aa16.7■□□□□ 0.26
MCF2L-213ENST00000421756 FOXD4L5Q5VV16 416 aaPredicted RBP16.7■□□□□ 0.26
MCF2L-213ENST00000421756 SIRT2Q8IXJ6 389 aa16.7■□□□□ 0.26
MCF2L-213ENST00000421756 FOXD4L4Q8WXT5 416 aaPredicted RBP16.7■□□□□ 0.26
MCF2L-213ENST00000421756 TTC21BQ7Z4L5 1316 aa16.7■□□□□ 0.26
MCF2L-213ENST00000421756 EIF2S2P20042 333 aaKnown RBP16.69■□□□□ 0.26
MCF2L-213ENST00000421756 G2E3Q7L622 706 aa16.69■□□□□ 0.26
MCF2L-213ENST00000421756 CFAP44Q96MT7 982 aa16.69■□□□□ 0.26
MCF2L-213ENST00000421756 ZC3H13Q5T200 1668 aaKnown RBP16.69■□□□□ 0.26
MCF2L-213ENST00000421756 A2ML1A8K2U0 1454 aa16.69■□□□□ 0.26
MCF2L-213ENST00000421756 MEIS3Q99687 375 aa16.69■□□□□ 0.26
MCF2L-213ENST00000421756 HDAC1Q13547 482 aaPredicted RBP16.67■□□□□ 0.26
MCF2L-213ENST00000421756 ARHGAP31Q2M1Z3 1444 aa16.67■□□□□ 0.26
MCF2L-213ENST00000421756 SMC5Q8IY18 1101 aa16.67■□□□□ 0.26
MCF2L-213ENST00000421756 NUCB1Q02818 461 aa16.67■□□□□ 0.26
MCF2L-213ENST00000421756 CALD1Q05682 793 aaKnown RBP16.67■□□□□ 0.26
MCF2L-213ENST00000421756 ABTB2Q8N961 1025 aa16.67■□□□□ 0.26
MCF2L-213ENST00000421756 IFT57Q9NWB7 429 aa16.67■□□□□ 0.26
MCF2L-213ENST00000421756 ARHGEF40Q8TER5 1519 aa16.67■□□□□ 0.26
MCF2L-213ENST00000421756 MTHFSDQ2M296 383 aaKnown RBP16.66■□□□□ 0.26
MCF2L-213ENST00000421756 EXOC6BQ9Y2D4 811 aa16.66■□□□□ 0.26
MCF2L-213ENST00000421756 ANXA1P04083 346 aa16.66■□□□□ 0.26
MCF2L-213ENST00000421756 CT47B1P0C2W7 299 aaPredicted RBP16.66■□□□□ 0.26
MCF2L-213ENST00000421756 TNRQ92752 1358 aa16.65■□□□□ 0.26
MCF2L-213ENST00000421756 ALDH1L2Q3SY69 923 aa16.65■□□□□ 0.26
MCF2L-213ENST00000421756 MAP3K19Q56UN5 1328 aa16.65■□□□□ 0.26
MCF2L-213ENST00000421756 CFAP74Q9C0B2 1584 aa16.65■□□□□ 0.26
MCF2L-213ENST00000421756 CD2BP2O95400 341 aaKnown RBP16.64■□□□□ 0.26
MCF2L-213ENST00000421756 FKBP5Q13451 457 aaPredicted RBP16.64■□□□□ 0.26
MCF2L-213ENST00000421756 LRRC7Q96NW7 1537 aa16.64■□□□□ 0.25
MCF2L-213ENST00000421756 LMOD3Q0VAK6 560 aa16.64■□□□□ 0.25
MCF2L-213ENST00000421756 FOXD4L6Q3SYB3 417 aaPredicted RBP16.64■□□□□ 0.25
MCF2L-213ENST00000421756 FOXD4L3Q6VB84 417 aaPredicted RBP16.64■□□□□ 0.25
MCF2L-213ENST00000421756 TBC1D9Q6ZT07 1266 aa16.64■□□□□ 0.25
MCF2L-213ENST00000421756 IL16Q14005 1332 aa16.64■□□□□ 0.25
MCF2L-213ENST00000421756 TMEM131LA2VDJ0 1609 aa16.64■□□□□ 0.25
MCF2L-213ENST00000421756 MYO3AQ8NEV4 1616 aa16.64■□□□□ 0.25
MCF2L-213ENST00000421756 CPS1P31327 1500 aa16.64■□□□□ 0.25
MCF2L-213ENST00000421756 ZNF692Q9BU19 519 aaPredicted RBP16.63■□□□□ 0.25
MCF2L-213ENST00000421756 DTNBO60941 627 aa16.63■□□□□ 0.25
MCF2L-213ENST00000421756 API5Q9BZZ5 524 aaKnown RBP16.63■□□□□ 0.25
MCF2L-213ENST00000421756 NLRP1Q9C000 1473 aa16.63■□□□□ 0.25
MCF2L-213ENST00000421756 EIF5BO60841 1220 aaKnown RBP16.62■□□□□ 0.25
MCF2L-213ENST00000421756 KCNA6P17658 529 aa16.62■□□□□ 0.25
MCF2L-213ENST00000421756 PREX1Q8TCU6 1659 aa16.62■□□□□ 0.25
MCF2L-213ENST00000421756 EYA1Q99502 592 aa16.62■□□□□ 0.25
MCF2L-213ENST00000421756 NCLP19338 710 aaKnown RBP16.62■□□□□ 0.25
MCF2L-213ENST00000421756 CLTCQ00610 1675 aaKnown RBP16.61■□□□□ 0.25
MCF2L-213ENST00000421756 PNPLA6Q8IY17 1366 aa16.61■□□□□ 0.25
MCF2L-213ENST00000421756 MAP4K4O95819 1239 aaPredicted RBP16.61■□□□□ 0.25
MCF2L-213ENST00000421756 COL3A1P02461 1466 aaPredicted RBP16.61■□□□□ 0.25
MCF2L-213ENST00000421756 ZFYVE9O95405 1425 aa16.61■□□□□ 0.25
MCF2L-213ENST00000421756 RICTORQ6R327 1708 aa16.6■□□□□ 0.25
MCF2L-213ENST00000421756 FAM135BQ49AJ0 1406 aa16.6■□□□□ 0.25
MCF2L-213ENST00000421756 RILPL2Q969X0 211 aa16.59■□□□□ 0.25
MCF2L-213ENST00000421756 EDC4Q6P2E9 1401 aaKnown RBP16.59■□□□□ 0.25
MCF2L-213ENST00000421756 SETD1BQ9UPS6 1966 aaKnown RBP16.59■□□□□ 0.25
MCF2L-213ENST00000421756 AAMPQ13685 434 aa16.59■□□□□ 0.25
MCF2L-213ENST00000421756 ANO8Q9HCE9 1232 aaPredicted RBP16.59■□□□□ 0.25
MCF2L-213ENST00000421756 TRIM6-TRIM34B2RNG4 842 aa16.58■□□□□ 0.25
MCF2L-213ENST00000421756 ESCO1Q5FWF5 840 aa16.58■□□□□ 0.25
MCF2L-213ENST00000421756 CHAMP1Q96JM3 812 aa16.58■□□□□ 0.25
MCF2L-213ENST00000421756 IL1RAPL2Q9NP60 686 aa16.58■□□□□ 0.25
MCF2L-213ENST00000421756 STK31Q9BXU1 1019 aa16.58■□□□□ 0.24
MCF2L-213ENST00000421756 MAP2P11137 1827 aaKnown RBP16.57■□□□□ 0.24
MCF2L-213ENST00000421756 GSPT1P15170 499 aaKnown RBP16.57■□□□□ 0.24
MCF2L-213ENST00000421756 TMEM2Q9UHN6 1383 aa16.57■□□□□ 0.24
MCF2L-213ENST00000421756 ZNF853P0CG23 659 aa16.57■□□□□ 0.24
MCF2L-213ENST00000421756 NEURL4Q96JN8 1562 aa16.57■□□□□ 0.24
MCF2L-213ENST00000421756 LRRC59Q96AG4 307 aaKnown RBP16.57■□□□□ 0.24
MCF2L-213ENST00000421756 PANK2Q9BZ23 570 aa16.57■□□□□ 0.24
MCF2L-213ENST00000421756 ANTXR1Q9H6X2 564 aa16.57■□□□□ 0.24
MCF2L-213ENST00000421756 GCC1Q96CN9 775 aa16.56■□□□□ 0.24
MCF2L-213ENST00000421756 MCM4P33991 863 aa16.56■□□□□ 0.24
MCF2L-213ENST00000421756 MSH6P52701 1360 aa16.55■□□□□ 0.24
MCF2L-213ENST00000421756 PLEKHM2Q8IWE5 1019 aa16.55■□□□□ 0.24
MCF2L-213ENST00000421756 CHMP5Q9NZZ3 219 aa16.55■□□□□ 0.24
MCF2L-213ENST00000421756 TRAK2O60296 914 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms