RNA–Protein interactions for RNA: ENST00000419459.1

LINC00642-201, long intergenic non-protein coding RNA 642, humanhuman

TSL 2 BASIC

Gene LINC00642, Length 2,026 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-201ENST00000419459 HAP1P54257 671 aaPredicted RBP17■□□□□ 0.31
LINC00642-201ENST00000419459 KCNH5Q8NCM2 988 aa17■□□□□ 0.31
LINC00642-201ENST00000419459 SMG6Q86US8 1419 aaKnown RBP17■□□□□ 0.31
LINC00642-201ENST00000419459 PNPLA6Q8IY17 1366 aa17■□□□□ 0.31
LINC00642-201ENST00000419459 COL3A1P02461 1466 aaPredicted RBP16.99■□□□□ 0.31
LINC00642-201ENST00000419459 HSPA1LP34931 641 aa16.99■□□□□ 0.31
LINC00642-201ENST00000419459 AMPHP49418 695 aa16.99■□□□□ 0.31
LINC00642-201ENST00000419459 PNISRQ8TF01 805 aaKnown RBP16.99■□□□□ 0.31
LINC00642-201ENST00000419459 CDK12Q9NYV4 1490 aaPredicted RBP16.99■□□□□ 0.31
LINC00642-201ENST00000419459 DEKP35659 375 aaKnown RBP16.98■□□□□ 0.31
LINC00642-201ENST00000419459 CHRNA2Q15822 529 aa16.98■□□□□ 0.31
LINC00642-201ENST00000419459 KIAA0232Q92628 1395 aa16.97■□□□□ 0.31
LINC00642-201ENST00000419459 ARHGEF25Q86VW2 580 aa16.97■□□□□ 0.31
LINC00642-201ENST00000419459 HOXC9P31274 260 aa16.96■□□□□ 0.31
LINC00642-201ENST00000419459 IRX6P78412 446 aaPredicted RBP16.96■□□□□ 0.31
LINC00642-201ENST00000419459 CFAP53Q96M91 514 aa16.96■□□□□ 0.31
LINC00642-201ENST00000419459 AXIN2Q9Y2T1 843 aa16.96■□□□□ 0.31
LINC00642-201ENST00000419459 FLT4P35916 1363 aa16.96■□□□□ 0.31
LINC00642-201ENST00000419459 COL22A1Q8NFW1 1626 aaPredicted RBP16.96■□□□□ 0.31
LINC00642-201ENST00000419459 LTV1Q96GA3 475 aaPredicted RBP16.96■□□□□ 0.3
LINC00642-201ENST00000419459 NOP58Q9Y2X3 529 aaKnown RBP16.96■□□□□ 0.3
LINC00642-201ENST00000419459 ADAMTS8Q9UP79 889 aa16.95■□□□□ 0.3
LINC00642-201ENST00000419459 NUTM2BA6NNL0 878 aaPredicted RBP16.94■□□□□ 0.3
LINC00642-201ENST00000419459 NUTM2EB1AL46 878 aaPredicted RBP16.94■□□□□ 0.3
LINC00642-201ENST00000419459 U2SURPO15042 1029 aaKnown RBP16.94■□□□□ 0.3
LINC00642-201ENST00000419459 NUTM2AQ8IVF1 878 aaPredicted RBP16.94■□□□□ 0.3
LINC00642-201ENST00000419459 RGPD2P0DJD1 1756 aa16.94■□□□□ 0.3
LINC00642-201ENST00000419459 DIAPH1O60610 1272 aaKnown RBP16.94■□□□□ 0.3
LINC00642-201ENST00000419459 WDR43Q15061 677 aaKnown RBP eCLIP16.94■□□□□ 0.3
LINC00642-201ENST00000419459 EIF4A2Q14240 407 aaKnown RBP16.93■□□□□ 0.3
LINC00642-201ENST00000419459 ADAMTS2O95450 1211 aa16.92■□□□□ 0.3
LINC00642-201ENST00000419459 PRDM11Q9NQV5 511 aa16.92■□□□□ 0.3
LINC00642-201ENST00000419459 COL18A1P39060 1754 aa16.92■□□□□ 0.3
LINC00642-201ENST00000419459 U2AF1L5P0DN76 240 aaPredicted RBP16.91■□□□□ 0.3
LINC00642-201ENST00000419459 IL13P35225 146 aa16.91■□□□□ 0.3
LINC00642-201ENST00000419459 U2AF1Q01081 240 aaKnown RBP eCLIP16.91■□□□□ 0.3
LINC00642-201ENST00000419459 IP6K1Q92551 441 aa16.91■□□□□ 0.3
LINC00642-201ENST00000419459 HMOX1P09601 288 aa16.91■□□□□ 0.3
LINC00642-201ENST00000419459 CCDC146Q8IYE0 955 aa16.91■□□□□ 0.3
LINC00642-201ENST00000419459 INSRP06213 1382 aa16.9■□□□□ 0.3
LINC00642-201ENST00000419459 RTL1A6NKG5 1358 aa16.9■□□□□ 0.3
LINC00642-201ENST00000419459 CPDO75976 1380 aa16.9■□□□□ 0.3
LINC00642-201ENST00000419459 JCADQ9P266 1359 aa16.9■□□□□ 0.3
LINC00642-201ENST00000419459 FAM83GA6ND36 823 aa16.89■□□□□ 0.29
LINC00642-201ENST00000419459 KIF24Q5T7B8 1368 aa16.88■□□□□ 0.29
LINC00642-201ENST00000419459 AEBP1Q8IUX7 1158 aa16.88■□□□□ 0.29
LINC00642-201ENST00000419459 LMO7Q8WWI1 1683 aa16.88■□□□□ 0.29
LINC00642-201ENST00000419459 CAMTA1Q9Y6Y1 1673 aa16.88■□□□□ 0.29
LINC00642-201ENST00000419459 RGPD1P0DJD0 1748 aa16.88■□□□□ 0.29
LINC00642-201ENST00000419459 USHBP1Q8N6Y0 703 aa16.87■□□□□ 0.29
LINC00642-201ENST00000419459 B4GALNT3Q6L9W6 998 aa16.87■□□□□ 0.29
LINC00642-201ENST00000419459 ANKRD24Q8TF21 1146 aa16.87■□□□□ 0.29
LINC00642-201ENST00000419459 NUDCQ9Y266 331 aa16.87■□□□□ 0.29
LINC00642-201ENST00000419459 ERBB3P21860 1342 aa16.87■□□□□ 0.29
LINC00642-201ENST00000419459 EYA1Q99502 592 aa16.86■□□□□ 0.29
LINC00642-201ENST00000419459 LRP6O75581 1613 aa16.86■□□□□ 0.29
LINC00642-201ENST00000419459 BLMP54132 1417 aaPredicted RBP16.86■□□□□ 0.29
LINC00642-201ENST00000419459 SALL2Q9Y467 1007 aaPredicted RBP16.86■□□□□ 0.29
LINC00642-201ENST00000419459 RNF123Q5XPI4 1314 aa16.85■□□□□ 0.29
LINC00642-201ENST00000419459 NBPF6Q5VWK0 638 aa16.84■□□□□ 0.29
LINC00642-201ENST00000419459 SULT6B1Q6IMI4 303 aa16.84■□□□□ 0.29
LINC00642-201ENST00000419459 NBPF4Q96M43 638 aa16.84■□□□□ 0.29
LINC00642-201ENST00000419459 STRN4Q9NRL3 753 aa16.84■□□□□ 0.29
LINC00642-201ENST00000419459 BTG4Q9NY30 223 aa16.84■□□□□ 0.29
LINC00642-201ENST00000419459 PLCH1Q4KWH8 1693 aa16.84■□□□□ 0.29
LINC00642-201ENST00000419459 ANP32AP39687 249 aaKnown RBP16.84■□□□□ 0.29
LINC00642-201ENST00000419459 COL5A2P05997 1499 aaPredicted RBP16.83■□□□□ 0.29
LINC00642-201ENST00000419459 COL14A1Q05707 1796 aaKnown RBP16.83■□□□□ 0.28
LINC00642-201ENST00000419459 CSB-PGBD3P0DP91 1061 aa16.82■□□□□ 0.28
LINC00642-201ENST00000419459 C8orf37Q96NL8 207 aa16.82■□□□□ 0.28
LINC00642-201ENST00000419459 PRKAR2BP31323 418 aa16.82■□□□□ 0.28
LINC00642-201ENST00000419459 IPO9Q96P70 1041 aaKnown RBP16.82■□□□□ 0.28
LINC00642-201ENST00000419459 RSPH6AQ9H0K4 717 aa16.82■□□□□ 0.28
LINC00642-201ENST00000419459 IGSF1Q8N6C5 1336 aa16.81■□□□□ 0.28
LINC00642-201ENST00000419459 NLRP2Q9NX02 1062 aa16.8■□□□□ 0.28
LINC00642-201ENST00000419459 USP35Q9P2H5 1018 aa16.8■□□□□ 0.28
LINC00642-201ENST00000419459 ABCC6O95255 1503 aa16.8■□□□□ 0.28
LINC00642-201ENST00000419459 APAF1O14727 1248 aa16.8■□□□□ 0.28
LINC00642-201ENST00000419459 NEUROD2Q15784 382 aa16.8■□□□□ 0.28
LINC00642-201ENST00000419459 PHACTR3Q96KR7 559 aa16.8■□□□□ 0.28
LINC00642-201ENST00000419459 PLEKHF1Q96S99 279 aa16.8■□□□□ 0.28
LINC00642-201ENST00000419459 RRP7AQ9Y3A4 280 aaKnown RBP16.8■□□□□ 0.28
LINC00642-201ENST00000419459 SPATA31A6Q5VVP1 1343 aa16.79■□□□□ 0.28
LINC00642-201ENST00000419459 LARP1Q6PKG0 1096 aaKnown RBP16.79■□□□□ 0.28
LINC00642-201ENST00000419459 FBXO41Q8TF61 875 aa16.79■□□□□ 0.28
LINC00642-201ENST00000419459 EVA1CP58658 441 aa16.79■□□□□ 0.28
LINC00642-201ENST00000419459 EP400Q96L91 3159 aa16.78■□□□□ 0.28
LINC00642-201ENST00000419459 RTL5Q5HYW3 569 aaPredicted RBP16.78■□□□□ 0.28
LINC00642-201ENST00000419459 TOM1L2Q6ZVM7 507 aa16.78■□□□□ 0.28
LINC00642-201ENST00000419459 KDRP35968 1356 aa16.78■□□□□ 0.28
LINC00642-201ENST00000419459 WDR17Q8IZU2 1322 aa16.78■□□□□ 0.28
LINC00642-201ENST00000419459 FAM208AQ9UK61 1670 aaKnown RBP16.77■□□□□ 0.28
LINC00642-201ENST00000419459 FCHSD2O94868 740 aa16.77■□□□□ 0.28
LINC00642-201ENST00000419459 NRAPQ86VF7 1730 aa16.77■□□□□ 0.27
LINC00642-201ENST00000419459 TCP11L2Q8N4U5 519 aa16.77■□□□□ 0.27
LINC00642-201ENST00000419459 RUNDC1Q96C34 613 aa16.77■□□□□ 0.27
LINC00642-201ENST00000419459 NGLY1Q96IV0 654 aa16.77■□□□□ 0.27
LINC00642-201ENST00000419459 MAPK8IP3Q9UPT6 1336 aa16.76■□□□□ 0.27
LINC00642-201ENST00000419459 MEX3CQ5U5Q3 659 aaKnown RBP16.75■□□□□ 0.27
LINC00642-201ENST00000419459 DLG5Q8TDM6 1919 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms