RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 PCDHGA4Q9Y5G9 962 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 CPS1P31327 1500 aa3.85□□□□□ -1.79
MCF2-204ENST00000414978 CFAP99D6REC4 459 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 CD46P15529 392 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 PRSS12P56730 875 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 FUT2Q10981 343 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 NPAS4Q8IUM7 802 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 PTCD2Q8WV60 388 aaKnown RBP3.84□□□□□ -1.79
MCF2-204ENST00000414978 EPAS1Q99814 870 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 MAFBQ9Y5Q3 323 aaPredicted RBP3.84□□□□□ -1.79
MCF2-204ENST00000414978 FAM135AQ9P2D6 1515 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 KDM5CP41229 1560 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 ATMINO43313 823 aaPredicted RBP3.84□□□□□ -1.79
MCF2-204ENST00000414978 LILRB3O75022 631 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 ZNF211Q13398 564 aaPredicted RBP3.84□□□□□ -1.79
MCF2-204ENST00000414978 L3MBTL3Q96JM7 780 aaPredicted RBP3.84□□□□□ -1.79
MCF2-204ENST00000414978 BCL2L13Q9BXK5 485 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 ZBTB3Q9H5J0 574 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 SLC52A1Q9NWF4 448 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 USTQ9Y2C2 406 aa3.84□□□□□ -1.79
MCF2-204ENST00000414978 GOLGA3Q08378 1498 aa3.84□□□□□ -1.8
MCF2-204ENST00000414978 DIXDC1Q155Q3 683 aa3.84□□□□□ -1.8
MCF2-204ENST00000414978 POLR3GLQ9BT43 218 aa3.84□□□□□ -1.8
MCF2-204ENST00000414978 NCOA1Q15788 1441 aa3.84□□□□□ -1.8
MCF2-204ENST00000414978 RNF17Q9BXT8 1623 aaKnown RBP3.83□□□□□ -1.8
MCF2-204ENST00000414978 SKIP12755 728 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 ZNF662Q6ZS27 426 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 FBXO33Q7Z6M2 555 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 SULF1Q8IWU6 871 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 BRPF3Q9ULD4 1205 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 AKNAQ7Z591 1439 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 SAMD9Q5K651 1589 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 SPTLC1O15269 473 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 SLC39A13Q96H72 371 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 MYO3AQ8NEV4 1616 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 ALKQ9UM73 1620 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 SETD1AO15047 1707 aaKnown RBP3.83□□□□□ -1.8
MCF2-204ENST00000414978 PRMT3O60678 531 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 CRTC2Q53ET0 693 aaPredicted RBP3.83□□□□□ -1.8
MCF2-204ENST00000414978 DCBLD2Q96PD2 775 aa3.83□□□□□ -1.8
MCF2-204ENST00000414978 DEPDC5O75140 1603 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 RAB15P59190 212 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 SMARCA5O60264 1052 aaPredicted RBP3.82□□□□□ -1.8
MCF2-204ENST00000414978 RECKO95980 971 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 RASA1P20936 1047 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 MTMR2Q13614 643 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 TSNAXIP1Q2TAA8 658 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 UBE2Q2Q8WVN8 375 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 GPATCH3Q96I76 525 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 NPATQ14207 1427 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 HOXA2O43364 376 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 FOSBP53539 338 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 GIMAP6Q6P9H5 292 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 ZMIZ1Q9ULJ6 1067 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 NOVA2Q9UNW9 492 aaKnown RBP3.82□□□□□ -1.8
MCF2-204ENST00000414978 HECW1Q76N89 1606 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 RAPGEF6Q8TEU7 1601 aa3.82□□□□□ -1.8
MCF2-204ENST00000414978 MYO5CQ9NQX4 1742 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 ZNF16P17020 682 aaPredicted RBP3.81□□□□□ -1.8
MCF2-204ENST00000414978 PSME1Q06323 249 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 KCNK17Q96T54 332 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 ANO8Q9HCE9 1232 aaPredicted RBP3.81□□□□□ -1.8
MCF2-204ENST00000414978 NCOA4Q13772 614 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 PRIMPOLQ96LW4 560 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 FAM161BQ96MY7 647 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 C9orf84Q5VXU9 1444 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 FBXO45P0C2W1 286 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 CTHP32929 405 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 RAD51AP2Q09MP3 1159 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 WASHC4Q2M389 1173 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 TATDN2Q93075 761 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 TCOF1Q13428 1488 aaKnown RBP3.81□□□□□ -1.8
MCF2-204ENST00000414978 KIF14Q15058 1648 aa3.81□□□□□ -1.8
MCF2-204ENST00000414978 SLC10A3P09131 477 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 DNAJB2P25686 324 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 MARSP56192 900 aaKnown RBP3.8□□□□□ -1.8
MCF2-204ENST00000414978 CARD14Q9BXL6 1004 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 ALG2Q9H553 416 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 USP17L3A6NCW0 530 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 USP17L4A6NCW7 530 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 DKK1O94907 266 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 TUSC1Q2TAM9 212 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 SWT1Q5T5J6 900 aaKnown RBP3.8□□□□□ -1.8
MCF2-204ENST00000414978 USP17L2Q6R6M4 530 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 USP17L1Q7RTZ2 530 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 CCER1Q8TC90 406 aaPredicted RBP3.8□□□□□ -1.8
MCF2-204ENST00000414978 MKRN1Q9UHC7 482 aaKnown RBP3.8□□□□□ -1.8
MCF2-204ENST00000414978 AXIN2Q9Y2T1 843 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 UHRF1BP1Q6BDS2 1440 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 DIP2CQ9Y2E4 1556 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 ITSN2Q9NZM3 1697 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 DENND4BO75064 1496 aaPredicted RBP3.8□□□□□ -1.8
MCF2-204ENST00000414978 C19orf67A6NJJ6 358 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 H3BRB1 525 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 TUT1Q9H6E5 874 aaKnown RBP3.8□□□□□ -1.8
MCF2-204ENST00000414978 TMEM134Q9H6X4 195 aa3.8□□□□□ -1.8
MCF2-204ENST00000414978 KIF27Q86VH2 1401 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 ANKRD33BA6NCL7 494 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 CAPN12Q6ZSI9 719 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 CERS3Q8IU89 383 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms