RNA–Protein interactions for RNA: ENST00000413899.1

HMGB1P11-201, Transcript of high mobility group box 1 pseudogene 11, humanhuman

BASIC

Gene HMGB1P11, Length 637 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P11-201ENST00000413899 NFATC2IPQ8NCF5 419 aa7.63□□□□□ -1.19
HMGB1P11-201ENST00000413899 FOXC1Q12948 553 aa7.62□□□□□ -1.19
HMGB1P11-201ENST00000413899 SNIP1Q8TAD8 396 aaKnown RBP7.62□□□□□ -1.19
HMGB1P11-201ENST00000413899 UCN2Q96RP3 112 aa7.62□□□□□ -1.19
HMGB1P11-201ENST00000413899 CHIC2Q9UKJ5 165 aa7.62□□□□□ -1.19
HMGB1P11-201ENST00000413899 TLL2Q9Y6L7 1015 aa7.62□□□□□ -1.19
HMGB1P11-201ENST00000413899 ADH1CP00326 375 aa7.61□□□□□ -1.19
HMGB1P11-201ENST00000413899 GRM5P41594 1212 aa7.61□□□□□ -1.19
HMGB1P11-201ENST00000413899 VASH1Q7L8A9 365 aaPredicted RBP7.61□□□□□ -1.19
HMGB1P11-201ENST00000413899 KCTD15Q96SI1 283 aaPredicted RBP7.61□□□□□ -1.19
HMGB1P11-201ENST00000413899 TOR4AQ9NXH8 423 aa7.61□□□□□ -1.19
HMGB1P11-201ENST00000413899 SERPINA10Q9UK55 444 aa7.61□□□□□ -1.19
HMGB1P11-201ENST00000413899 GIGYF1O75420 1035 aaPredicted RBP7.6□□□□□ -1.19
HMGB1P11-201ENST00000413899 NR5A1Q13285 461 aa7.6□□□□□ -1.19
HMGB1P11-201ENST00000413899 RNF20Q5VTR2 975 aa7.6□□□□□ -1.19
HMGB1P11-201ENST00000413899 TNFRSF10AO00220 468 aa7.59□□□□□ -1.19
HMGB1P11-201ENST00000413899 INTS6LQ5JSJ4 861 aaKnown RBP7.59□□□□□ -1.19
HMGB1P11-201ENST00000413899 CYP4X1Q8N118 509 aa7.59□□□□□ -1.19
HMGB1P11-201ENST00000413899 ARID5BQ14865 1188 aa7.58□□□□□ -1.2
HMGB1P11-201ENST00000413899 SLFNL1Q499Z3 407 aa7.58□□□□□ -1.2
HMGB1P11-201ENST00000413899 RNF135Q8IUD6 432 aa7.58□□□□□ -1.2
HMGB1P11-201ENST00000413899 CCDC82Q8N4S0 544 aa7.58□□□□□ -1.2
HMGB1P11-201ENST00000413899 CCDC97Q96F63 343 aaPredicted RBP7.58□□□□□ -1.2
HMGB1P11-201ENST00000413899 PPP1R12CQ9BZL4 782 aa7.58□□□□□ -1.2
HMGB1P11-201ENST00000413899 PIK3CDO00329 1044 aa7.57□□□□□ -1.2
HMGB1P11-201ENST00000413899 ALDH1A1P00352 501 aa7.57□□□□□ -1.2
HMGB1P11-201ENST00000413899 FSHRP23945 695 aa7.57□□□□□ -1.2
HMGB1P11-201ENST00000413899 MAP7D1Q3KQU3 841 aa7.57□□□□□ -1.2
HMGB1P11-201ENST00000413899 TTC24A2A3L6 582 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P11-201ENST00000413899 ATP9BO43861 1147 aa7.56□□□□□ -1.2
HMGB1P11-201ENST00000413899 LZTS3O60299 673 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P11-201ENST00000413899 SMPD1P17405 629 aa7.56□□□□□ -1.2
HMGB1P11-201ENST00000413899 DHX9Q08211 1270 aaKnown RBP7.56□□□□□ -1.2
HMGB1P11-201ENST00000413899 TBC1D9Q6ZT07 1266 aa7.56□□□□□ -1.2
HMGB1P11-201ENST00000413899 PLEKHM2Q8IWE5 1019 aa7.56□□□□□ -1.2
HMGB1P11-201ENST00000413899 CCDC85AQ96PX6 553 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P11-201ENST00000413899 PDZRN3Q9UPQ7 1066 aa7.56□□□□□ -1.2
HMGB1P11-201ENST00000413899 PALM3A6NDB9 673 aaPredicted RBP7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 J3QL48 77 aa7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 NR3C2P08235 984 aa7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 CFAP70Q5T0N1 1121 aa7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 TRAF7Q6Q0C0 670 aa7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 CCDC116Q8IYX3 515 aa7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 PLPP7Q8NBV4 271 aa7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 TFIP11Q9UBB9 837 aaKnown RBP7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 MAFBQ9Y5Q3 323 aaPredicted RBP7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 WASF2Q9Y6W5 498 aa7.55□□□□□ -1.2
HMGB1P11-201ENST00000413899 ERVH48-1M5A8F1 160 aa7.54□□□□□ -1.2
HMGB1P11-201ENST00000413899 SKIP12755 728 aa7.54□□□□□ -1.2
HMGB1P11-201ENST00000413899 NNTQ13423 1086 aa7.54□□□□□ -1.2
HMGB1P11-201ENST00000413899 TRIM52Q96A61 297 aa7.54□□□□□ -1.2
HMGB1P11-201ENST00000413899 USP17L5A8MUK1 530 aa7.53□□□□□ -1.2
HMGB1P11-201ENST00000413899 TSGA10IPQ3SY00 556 aa7.53□□□□□ -1.2
HMGB1P11-201ENST00000413899 PPP1R26Q5T8A7 1209 aaPredicted RBP7.53□□□□□ -1.2
HMGB1P11-201ENST00000413899 KLF16Q9BXK1 252 aaPredicted RBP7.53□□□□□ -1.2
HMGB1P11-201ENST00000413899 DOLKQ9UPQ8 538 aa7.53□□□□□ -1.2
HMGB1P11-201ENST00000413899 NRG2O14511 850 aaPredicted RBP7.52□□□□□ -1.21
HMGB1P11-201ENST00000413899 PCDHB11Q9Y5F2 797 aa7.52□□□□□ -1.21
HMGB1P11-201ENST00000413899 EMILIN1Q9Y6C2 1016 aa7.52□□□□□ -1.21
HMGB1P11-201ENST00000413899 USP17L3A6NCW0 530 aa7.51□□□□□ -1.21
HMGB1P11-201ENST00000413899 USP17L4A6NCW7 530 aa7.51□□□□□ -1.21
HMGB1P11-201ENST00000413899 ERVK-9P63128 1117 aa7.51□□□□□ -1.21
HMGB1P11-201ENST00000413899 LAPTM4AQ15012 233 aa7.51□□□□□ -1.21
HMGB1P11-201ENST00000413899 USP17L2Q6R6M4 530 aa7.51□□□□□ -1.21
HMGB1P11-201ENST00000413899 USP17L1Q7RTZ2 530 aa7.51□□□□□ -1.21
HMGB1P11-201ENST00000413899 PGPEP1Q9NXJ5 209 aa7.51□□□□□ -1.21
HMGB1P11-201ENST00000413899 LILRA1O75019 489 aa7.5□□□□□ -1.21
HMGB1P11-201ENST00000413899 AVPP01185 164 aa7.5□□□□□ -1.21
HMGB1P11-201ENST00000413899 RAB15P59190 212 aa7.5□□□□□ -1.21
HMGB1P11-201ENST00000413899 SRPK2P78362 688 aaKnown RBP7.5□□□□□ -1.21
HMGB1P11-201ENST00000413899 NCOA4Q13772 614 aa7.5□□□□□ -1.21
HMGB1P11-201ENST00000413899 CDCA7Q9BWT1 371 aaPredicted RBP7.5□□□□□ -1.21
HMGB1P11-201ENST00000413899 GFRA3O60609 400 aa7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 DGAT1O75907 488 aa7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 LMOD1P29536 600 aaPredicted RBP7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 MYT1Q01538 1121 aa7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 USP4Q13107 963 aa7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 EML3Q32P44 896 aa7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 KANK4Q5T7N3 995 aaPredicted RBP7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 CC2D2BQ6DHV5 1058 aa7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 ZNF784Q8NCA9 323 aaPredicted RBP7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 HPS1Q92902 700 aa7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 SIRT1Q96EB6 747 aa7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 TMPRSS4Q9NRS4 437 aa7.49□□□□□ -1.21
HMGB1P11-201ENST00000413899 TIMP2P16035 220 aa7.48□□□□□ -1.21
HMGB1P11-201ENST00000413899 DEPDC4Q8N2C3 294 aa7.48□□□□□ -1.21
HMGB1P11-201ENST00000413899 PBXIP1Q96AQ6 731 aa7.48□□□□□ -1.21
HMGB1P11-201ENST00000413899 FAM187AA6NFU0 413 aa7.47□□□□□ -1.21
HMGB1P11-201ENST00000413899 PPP1R15AO75807 674 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P11-201ENST00000413899 SCTRP47872 440 aa7.47□□□□□ -1.21
HMGB1P11-201ENST00000413899 WDR4P57081 412 aaKnown RBP7.47□□□□□ -1.21
HMGB1P11-201ENST00000413899 OXLD1Q5BKU9 147 aa7.47□□□□□ -1.21
HMGB1P11-201ENST00000413899 Q6ZVU0 165 aa7.47□□□□□ -1.21
HMGB1P11-201ENST00000413899 ITPKCQ96DU7 683 aa7.47□□□□□ -1.21
HMGB1P11-201ENST00000413899 CYLDQ9NQC7 956 aa7.47□□□□□ -1.21
HMGB1P11-201ENST00000413899 ATP5J2-PTCD1G3V325 749 aa7.46□□□□□ -1.22
HMGB1P11-201ENST00000413899 ZIC2O95409 532 aaPredicted RBP7.46□□□□□ -1.22
HMGB1P11-201ENST00000413899 MYCP01106 439 aaPredicted RBP7.46□□□□□ -1.22
HMGB1P11-201ENST00000413899 SMCPP49901 116 aaPredicted RBP7.46□□□□□ -1.22
HMGB1P11-201ENST00000413899 TRIM50Q86XT4 487 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms