RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 RSPH6AQ9H0K4 717 aa16.41■□□□□ 0.22
CHMP3-204ENST00000409727 ALS2Q96Q42 1657 aa16.4■□□□□ 0.22
CHMP3-204ENST00000409727 NFAT5O94916 1531 aa16.4■□□□□ 0.22
CHMP3-204ENST00000409727 FCHSD2O94868 740 aa16.4■□□□□ 0.22
CHMP3-204ENST00000409727 LTN1O94822 1766 aa16.4■□□□□ 0.22
CHMP3-204ENST00000409727 TNS3Q68CZ2 1445 aa16.4■□□□□ 0.22
CHMP3-204ENST00000409727 PDE3BQ13370 1112 aa16.39■□□□□ 0.22
CHMP3-204ENST00000409727 CABLES1Q8TDN4 633 aa16.39■□□□□ 0.22
CHMP3-204ENST00000409727 SUPT16HQ9Y5B9 1047 aaKnown RBP16.39■□□□□ 0.22
CHMP3-204ENST00000409727 AEBP1Q8IUX7 1158 aa16.39■□□□□ 0.21
CHMP3-204ENST00000409727 PNNQ9H307 717 aaKnown RBP16.39■□□□□ 0.21
CHMP3-204ENST00000409727 USP19O94966 1318 aa16.38■□□□□ 0.21
CHMP3-204ENST00000409727 ZNF521Q96K83 1311 aa16.38■□□□□ 0.21
CHMP3-204ENST00000409727 NEFMP07197 916 aa16.38■□□□□ 0.21
CHMP3-204ENST00000409727 SULT6B1Q6IMI4 303 aa16.38■□□□□ 0.21
CHMP3-204ENST00000409727 SPATA31A3Q5VYP0 1347 aa16.38■□□□□ 0.21
CHMP3-204ENST00000409727 ZC3H6P61129 1189 aaKnown RBP16.37■□□□□ 0.21
CHMP3-204ENST00000409727 GOLGA2Q08379 1002 aa16.37■□□□□ 0.21
CHMP3-204ENST00000409727 WWC1Q8IX03 1113 aa16.37■□□□□ 0.21
CHMP3-204ENST00000409727 SLIT3O75094 1523 aa16.37■□□□□ 0.21
CHMP3-204ENST00000409727 PHACTR3Q96KR7 559 aa16.37■□□□□ 0.21
CHMP3-204ENST00000409727 MED1Q15648 1581 aaPredicted RBP16.37■□□□□ 0.21
CHMP3-204ENST00000409727 TMPOP42166 694 aaKnown RBP16.36■□□□□ 0.21
CHMP3-204ENST00000409727 IP6K1Q92551 441 aa16.35■□□□□ 0.21
CHMP3-204ENST00000409727 SOS2Q07890 1332 aaPredicted RBP16.35■□□□□ 0.21
CHMP3-204ENST00000409727 RTL1A6NKG5 1358 aa16.35■□□□□ 0.21
CHMP3-204ENST00000409727 KIF24Q5T7B8 1368 aa16.35■□□□□ 0.21
CHMP3-204ENST00000409727 RIPK4P57078 832 aa16.35■□□□□ 0.21
CHMP3-204ENST00000409727 ARHGEF25Q86VW2 580 aa16.35■□□□□ 0.21
CHMP3-204ENST00000409727 NGEFQ8N5V2 710 aa16.35■□□□□ 0.21
CHMP3-204ENST00000409727 SPINK5Q9NQ38 1064 aaPredicted RBP16.35■□□□□ 0.21
CHMP3-204ENST00000409727 ARHGEF10O15013 1369 aa16.34■□□□□ 0.21
CHMP3-204ENST00000409727 EYA1Q99502 592 aa16.34■□□□□ 0.21
CHMP3-204ENST00000409727 RGPD1P0DJD0 1748 aa16.32■□□□□ 0.2
CHMP3-204ENST00000409727 ROBO1Q9Y6N7 1651 aa16.32■□□□□ 0.2
CHMP3-204ENST00000409727 SLFN5Q08AF3 891 aa16.32■□□□□ 0.2
CHMP3-204ENST00000409727 USHBP1Q8N6Y0 703 aa16.32■□□□□ 0.2
CHMP3-204ENST00000409727 PHRF1Q9P1Y6 1649 aaKnown RBP16.32■□□□□ 0.2
CHMP3-204ENST00000409727 NHSL1Q5SYE7 1610 aa16.31■□□□□ 0.2
CHMP3-204ENST00000409727 NEFLP07196 543 aa16.31■□□□□ 0.2
CHMP3-204ENST00000409727 HAP1P54257 671 aaPredicted RBP16.31■□□□□ 0.2
CHMP3-204ENST00000409727 IRX6P78412 446 aaPredicted RBP16.31■□□□□ 0.2
CHMP3-204ENST00000409727 CCDC27Q2M243 656 aa16.31■□□□□ 0.2
CHMP3-204ENST00000409727 DUSP27Q5VZP5 1158 aa16.31■□□□□ 0.2
CHMP3-204ENST00000409727 TRIM35Q9UPQ4 493 aa16.31■□□□□ 0.2
CHMP3-204ENST00000409727 AXIN2Q9Y2T1 843 aa16.31■□□□□ 0.2
CHMP3-204ENST00000409727 IGSF1Q8N6C5 1336 aa16.31■□□□□ 0.2
CHMP3-204ENST00000409727 PIP4K2BP78356 416 aa16.3■□□□□ 0.2
CHMP3-204ENST00000409727 FKBP8Q14318 412 aa16.3■□□□□ 0.2
CHMP3-204ENST00000409727 CHRNA2Q15822 529 aa16.3■□□□□ 0.2
CHMP3-204ENST00000409727 NFE2L2Q16236 605 aa16.3■□□□□ 0.2
CHMP3-204ENST00000409727 E9PSI1 815 aa16.29■□□□□ 0.2
CHMP3-204ENST00000409727 LRRC59Q96AG4 307 aaKnown RBP16.29■□□□□ 0.2
CHMP3-204ENST00000409727 ANKRD24Q8TF21 1146 aa16.29■□□□□ 0.2
CHMP3-204ENST00000409727 WDR63Q8IWG1 891 aa16.28■□□□□ 0.2
CHMP3-204ENST00000409727 RCAN3Q9UKA8 241 aa16.28■□□□□ 0.2
CHMP3-204ENST00000409727 CRYBG1Q9Y4K1 1723 aa16.27■□□□□ 0.2
CHMP3-204ENST00000409727 KIAA0232Q92628 1395 aa16.27■□□□□ 0.2
CHMP3-204ENST00000409727 NBPF6Q5VWK0 638 aa16.27■□□□□ 0.2
CHMP3-204ENST00000409727 NBPF4Q96M43 638 aa16.27■□□□□ 0.2
CHMP3-204ENST00000409727 THUMPD2Q9BTF0 503 aaKnown RBP16.27■□□□□ 0.2
CHMP3-204ENST00000409727 KDRP35968 1356 aa16.26■□□□□ 0.19
CHMP3-204ENST00000409727 TOM1O60784 492 aa16.26■□□□□ 0.19
CHMP3-204ENST00000409727 NCBP3Q53F19 620 aaKnown RBP16.26■□□□□ 0.19
CHMP3-204ENST00000409727 TRMT2AQ8IZ69 625 aaKnown RBP16.26■□□□□ 0.19
CHMP3-204ENST00000409727 RGPD5Q99666 1765 aa16.26■□□□□ 0.19
CHMP3-204ENST00000409727 FAM83GA6ND36 823 aa16.25■□□□□ 0.19
CHMP3-204ENST00000409727 RGPD2P0DJD1 1756 aa16.25■□□□□ 0.19
CHMP3-204ENST00000409727 UBAP1LF5GYI3 381 aa16.25■□□□□ 0.19
CHMP3-204ENST00000409727 DCTN1Q14203 1278 aa16.24■□□□□ 0.19
CHMP3-204ENST00000409727 TSR2Q969E8 191 aaKnown RBP16.24■□□□□ 0.19
CHMP3-204ENST00000409727 PRDM11Q9NQV5 511 aa16.24■□□□□ 0.19
CHMP3-204ENST00000409727 LAS1LQ9Y4W2 734 aaKnown RBP16.24■□□□□ 0.19
CHMP3-204ENST00000409727 CSB-PGBD3P0DP91 1061 aa16.23■□□□□ 0.19
CHMP3-204ENST00000409727 MTHFSDQ2M296 383 aaKnown RBP16.23■□□□□ 0.19
CHMP3-204ENST00000409727 ERBB3P21860 1342 aa16.23■□□□□ 0.19
CHMP3-204ENST00000409727 DLG5Q8TDM6 1919 aa16.23■□□□□ 0.19
CHMP3-204ENST00000409727 MYH16Q9H6N6 1097 aa16.22■□□□□ 0.19
CHMP3-204ENST00000409727 AHDC1Q5TGY3 1603 aaPredicted RBP16.22■□□□□ 0.19
CHMP3-204ENST00000409727 LMOD3Q0VAK6 560 aa16.22■□□□□ 0.19
CHMP3-204ENST00000409727 CPDO75976 1380 aa16.21■□□□□ 0.19
CHMP3-204ENST00000409727 NLRP2Q9NX02 1062 aa16.21■□□□□ 0.19
CHMP3-204ENST00000409727 ABCA3Q99758 1704 aa16.21■□□□□ 0.19
CHMP3-204ENST00000409727 MCM10Q7L590 875 aa16.2■□□□□ 0.18
CHMP3-204ENST00000409727 COL18A1P39060 1754 aa16.2■□□□□ 0.18
CHMP3-204ENST00000409727 FANCIQ9NVI1 1328 aa16.2■□□□□ 0.18
CHMP3-204ENST00000409727 PHLPP1O60346 1717 aa16.19■□□□□ 0.18
CHMP3-204ENST00000409727 GAS2L2Q8NHY3 880 aa16.19■□□□□ 0.18
CHMP3-204ENST00000409727 IL16Q14005 1332 aa16.18■□□□□ 0.18
CHMP3-204ENST00000409727 RRP1P56182 461 aaKnown RBP16.18■□□□□ 0.18
CHMP3-204ENST00000409727 RTF1Q92541 710 aaKnown RBP16.18■□□□□ 0.18
CHMP3-204ENST00000409727 PLIN1O60240 522 aa16.17■□□□□ 0.18
CHMP3-204ENST00000409727 CALD1Q05682 793 aaKnown RBP16.17■□□□□ 0.18
CHMP3-204ENST00000409727 RNF123Q5XPI4 1314 aa16.17■□□□□ 0.18
CHMP3-204ENST00000409727 EXOSC9Q06265 439 aaKnown RBP16.16■□□□□ 0.18
CHMP3-204ENST00000409727 CERKQ8TCT0 537 aa16.16■□□□□ 0.18
CHMP3-204ENST00000409727 STRN4Q9NRL3 753 aa16.16■□□□□ 0.18
CHMP3-204ENST00000409727 CAMTA1Q9Y6Y1 1673 aa16.15■□□□□ 0.18
CHMP3-204ENST00000409727 ABCC6O95255 1503 aa16.15■□□□□ 0.18
CHMP3-204ENST00000409727 COL16A1Q07092 1604 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms